Pires, ACC, Oliveira, V, Cleary, DFR, Polónia AR, Coelho, FJRC, Waheed, Z, de Voogd, NJ, Gomes, NCM (2021) Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia.
Marine Biology Research,
.
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Ferreira M.R.S., Cleary D.F.R., Coelho F.J.R.C., Gomes N.C.M., Huang Y.M., Polonia A.R.M., de Voogd N.J. (2020) Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor.
ANNALS OF MICROBIOLOGY, 70
, (1), .
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Louvado A., Coelho F.J.R.C., Palma M., Tavares L.C., Ozorio R.O.A., Magnoni L., Viegas I., Gomes N.C.M. (2020) Effect of glycerol feed-supplementation on seabass metabolism and gut microbiota.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,
.
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Duarte L.N., Coelho F.J.R.C., Cleary D.F.R., Bonifacio D., Martins P., Gomes N.C.M. (2019) Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): A seasonal survey.
AQUACULTURE, 503
59-69.
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Cleary D.F.R., Swierts T., Coelho F.J.R.C., Polonia A.R.M., Huang Y.S.M., Ferreira M.R.S., Putchakarn S., Carvalheiro L., van der Ent E., Ueng J.P., Gomes N.C.M., de Voogd N.J. (2019) The sponge microbiome within the greater coral reef microbial metacommunity.
NATURE COMMUNICATIONS, 10
.
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Duarte L.N., Coelho F.J.R.C., Oliveira V., Cleary D.F.R., Martins P., Gomes N.C.M. (2019) Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production.
PLOS ONE, 14
, (1), .
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Louvado A., Coelho F.J.R.C., Oliveira V., Gomes H., Cleary D.F.R., Simoes M.M.Q., Cunha A., Gomes N.C.M. (2019) Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment.
JOURNAL OF APPLIED MICROBIOLOGY, 127
, (1), 134-149.
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Coelho F.J.R.C., Cleary D.F.R., Gomes N.C.M., Polonia A.R.M., Huang Y.M., Liu L.L., de Voogd N.J. (2018) Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.
MICROBIAL ECOLOGY, 75
, (1), 239-254.
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Boaventura C.M., Coelho F.J.R.C., Martins P.T., Pires A.C.C., Duarte L.N., Uetanabaro A.P.T., Cleary D.F.R., Gomes N.C.M. (2018) Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis.
AQUACULTURE, 490
321-328.
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Martins P., Coelho F.J.R.C., Cleary D.F.R., Pires A.C.C., Marques B., Rodrigues A.M., Quintino V., Gomes N.C.M. (2018) Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system.
AQUACULTURE, 490
240-250.
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Louvado A., Coelho F.J.R.C., Gomes H., Cleary D.F.R., Cunha A., Gomes N.C.M. (2018) Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 25
, (32), 32756-32766.
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Polonia A.R.M., Cleary D.F.R., Coelho F.J.R.D., Becking L.E., de Voogd N.J., Toha A.H.A., Gomes N.C.M. (2018) Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIOLOGY RESEARCH, 14
, (6), 537-550.
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Cleary D.F.R., Coelho F.J.R.C., Oliveira V., Gomes N.C.M., Polonia A.R.M. (2017) Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment.
Marine Ecology, 38
, (2), -e12411.
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Polonia A.R.M., Cleary D.F.R., Freitas R., Coelho F.J.R.C., de Voogd N.J., Gomes N.C.M. (2016) Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment.
MARINE GENOMICS, 29
69-80.
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Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution.
MOLECULAR ECOLOGY, 25
, (18), 4645-4659.
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Coelho F.J.R.C., Louvado A., Domingues P.M., Cleary D.F.R., Ferreira M., Almeida A., Cunha M.R., Cunha A., Gomes N.C.M. (2016) Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz.
SCIENTIFIC REPORTS, 6
, (35272), .
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Martins P., Navarro R.V.V., Coelho F.J.R.C., Gomes N.C.M. (2015) Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples.
AQUACULTURE, 435
137-142.
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Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Lillebo A.I., Almeida A., Cunha A., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R., Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.
GLOBAL CHANGE BIOLOGY, 21
, (5), 1871-1886.
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Santos L., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha Â., Almeida A. (2014) Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro).
Journal Of Plankton Research, 36
, (1), 230-242.
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Rocha J., Coelho F.J.R.C., Peixe L., Gomes N.C.M., Calado R. (2014) Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.
SCIENTIFIC REPORTS, 4
.
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Domingues P.M., Louvado A., Oliveira V., Coelho F.J., Almeida A., Gomes N.C.M., Cunha A. (2013) Selective cultures for the isolation of biosurfactant producing bacteria: comparison of environmental inocula and hydrophobic carbon sources.
Preparative Biochemistry & Biotechnology, 43
, (3), 237-55.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.
GLOBAL CHANGE BIOLOGY, 19
, (8), 2584-2595.
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Coelho, F.J.R.C,Santos, A.L. Coimbra, J, Almeida, A, Cunha, A, Cleary, D.F.R, Calado, R., Gomes, N.C.M. (2013) Interactive effects of global climate change and pollution on marine microbes: The way ahead.
Ecology And Evolution , Volume 3
, (Issue 6), .
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Louvado A., Coelho F.J.R.C., Domingues P., Gomes NCM, Santos A.L., Almeida A., Cunha A . (2012) Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer.
Journal Of Microbiology And Biotechnology, 22
, (3), 283–291.
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Coelho F.J.R.C., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M., Cunha A. (2011) Exploring hydrocarbonoclastic bacterial communities in the estuarine surface microlayer.
Aquatic Microbial Ecology,
, (64), 185-195.
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Santos L.M.P., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2011) Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics.
FEMS Microbiology Ecology, 77
, (3), 636-646.
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Oliveira V., Santos A.L., Coelho F., Gomes N.C.M., Silva H., Almeida A., Cunha A. (2010) Effects of monospecific banks of salt marsh vegetationon sediment bacterial communities.
Microbial Ecology, 60
, (1), 167–179.
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Francisco José Riso da Costa Coelho
Assistant Researcher
- Researcher ID: M-3561-2018
- ORCID: 0000-0001-7638-8628
- Ciencia ID: 2119-2C29-3E33
- Department: Biology
- Research Group: Coastal and Deep-Ocean Ecology & Conservation (CDEC)
- ISI Web of KnowledgeSM search factor: Author: (Coelho FJRC) OR Author: (Coelho F.J.R.C.) OR Author: (Coelho F) AND Address: (CESAM)
Research interests
1.Environmental Microbiology; Microbial Ecology; Molecular Biology
2.Bioinformatics, metagenomic and metatranscriptomic based analysis
3.Effects of climate change in microbial community structure and function
4.Interactions between microbial communities and oil hydrocarbon
Other interests
1.Technological entrepreneurship
2.Inovation in Biotechnology
2.Bioinformatics, metagenomic and metatranscriptomic based analysis
3.Effects of climate change in microbial community structure and function
4.Interactions between microbial communities and oil hydrocarbon
Other interests
1.Technological entrepreneurship
2.Inovation in Biotechnology
Academic degrees
2013 – PhD in Biology, Specialization in Microbiology by the Aveiro University.
2008 – Master in Microbiology by the University of Aveiro
2007 – 5 years degree in Biology by the University of Aveiro
2008 – Master in Microbiology by the University of Aveiro
2007 – 5 years degree in Biology by the University of Aveiro
Scientific activities
March 2019 - Present. Junior Researcher. Centre for Environmental and Marine Studies (CESAM), Department of Biology, University of Aveiro (UA), Aveiro, Portugal. Financed by CEEC 2017 - Individual Call to Scientific Employment Stimulus (CEECIND/00070/2017).
2014 -2018. Postdoctoral Researcher. Centre for Environmental and Marine Studies (CESAM), Department of Biology, University of Aveiro (UA), Aveiro, Portugal. Funded by FCT (SFRH/BPD/92366/2013).
2014 -2018. Postdoctoral Researcher. Centre for Environmental and Marine Studies (CESAM), Department of Biology, University of Aveiro (UA), Aveiro, Portugal. Funded by FCT (SFRH/BPD/92366/2013).
Publications
WoS Papers
(27)
Other Papers
(0)
Books
(0)
Book Chapter
(3)
Thesis
(3)
Communications
(27)
Other Publications
(2)
Reports
(0)
Projects
In Progress (5)
Concluded (3)
ConTribuT - Conversion of dietary tributyrin in rainbow trout
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MAXIMUS.PT - Research and development for the production of larvae and juveniles of turbot in maternity
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Symbioreactor - Sustainable Production of Bioactive Metabolites from Microbial Symbionts of Marine Sponges and Corals
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4D-REEF-Past, present, and future of coral reefs in the Coral Triangle
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AquaHeal - Microbial modulation in aquacultures with recirculation system: towards a production system suppressor of diseases
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EcoTech-SPONGE- Assessing the ECOlogical functions and potential bioTECHnological applications of plasmid assemblages from microbial symbionts of marine SPONGEs
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AQUASAFE - Development of new technologies to anticipate and diagnose disease outbreaks in aquaculture
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Global climate change and pollution: a synergy designed for disaster?
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Scientific Supervision
In progress
(0)
Concluded
(2)
Master (Main Supervisor):
Hélder Alexandre Campos Gomes
(not a CESAM member)
PhD (Co-supervisor):
Letícia Novaes Duarte
(ex-CESAM member)
Featured Publications
Cleary D.F.R., Swierts T., Coelho F.J.R.C., Polónia A.R.M., Huang Y.M., Ferreira M.R.S., Putchakarn S., Carvalheiro L., van der Ent E., Ueng J-P., Gomes N.C.M., de Voogd N.J. (2019) The sponge microbiome within the greater coral reef microbial metacommunity. Nature Communications. 10, 1644. (IF 12.35)
Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution. Molecular Ecology. 25, 4645-4659. (IF 6.08)
Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simões M.M.Q., Oliveira V., Lillebø A., Almeida A., Cunha Â., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R. and Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory simulated estuarine benthic communities. Global Change Biology. 5, 1871-1886. (IF 8.99)
Coelho F.J.R.C., Rocha R. J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha Â., Lillebø A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities. Global Change Biology. 19, 8, 2584–2595. (IF 8.99)
Technological entrepreneurship activities
Co-Founder of DNA TRUSTAG a spin-off company of University of Aveiro.
July 2017 – For the second time DNA TRUSTAG was awarded with the Seal of Excellence by the European Commission within the EU Framework Programme for Research and Innovation. The proposal was scored as a high-quality project in a highly competitive evaluation process during the SME instrument phase 2 call. The company reached the 3º best score in Portugal and 9º place for all projects in the Topic: Engaging SMEs in security research and development.
October 2016 - DNA TRUSTAG receives Horizon 2020 SME Instrument Phase 1 funding. The SME instrument is a funding program of the European Union, which aims to transform disruptive ideas into concrete innovative solutions with an European and global impact. https://uaonline.ua.pt/pub/detail.asp?lg=pt&c=48060
June 2016 - The company was awarded with the Seal of Excellence by the European Commission within the Horizon 2020 (EU Framework Programme for Research and Innovation). The seal certifies the innovative character and commercialization potential of the technology developed by our group (LEMAM) at CESAM.
Prizes/Distinctions
2019 - Organizing committee of the Bacterial and Genetics and Ecology (BAGEGO) Symposium, a leading European conference in prokaryotic genetics and ecology.
2015 - ISME young ambassador - since 2015 I serve as young ambassador for the International Society for Microbial Ecology (ISME) in Portugal. ISME is the principal scientific society for the field of Microbial Ecology.
2014 - Prototype awarded - I Transfrontier Contest for Prototypes Oriented to the Market (Prototransfer). INESPO II - Innovation Network Spain-Portugal.
2014 - PROVE IT - Financial award for development of a prototype “Use of chimeric DNA molecules for development of molecular barcode labels”. Technology Transfer Unit of the University of Aveiro (UATEC) and project GAPI 3.
2013 – 2014 - Funded project: Labels for DNA authentication products – DNAprove. Funded by the Portuguese Programme "Passport for Entrepreneurship".
Patents
- Coelho, FJRC, Gomes, NCM, Ferreira, MRS, Vieira, FYM “Method and device for stabilizing and storing DNA at room temperature and uses thereof”. Provisional Patent Application. PN116392. Date of request 15.05.2020.
- Gomes, NCM, Oliveira, VJ, Coelho, FJRC, dos Santos, ARL. "A portable device, a method to read authentication labels and their uses”. International Patent: PCT/ IB2017/052570. Date of request: 28.04.2017.
Invited talks
AtUAliza-te 2015, Aveiro University. ActUAliza-te is a conference that mainly targets marketing professionals. My talk was integrated in the innovation panel.
Brokerage Event INESPOII 2015, Conselho Empresarial do Centro, Coimbra. Discussing the role of universities in entrepreneurship development.
Oral presentation in international symposium - Bioremediation of oil-contaminated environments, Braga, May 11, 2015 - "Response of sediment archaeal communities to ocean acidification and oil pollution". In this presentation I described part of my work as a Post-Doc.
1st Advanced Seminars in Microbial Ecology. Symbioses, biotechnology and industry in a changing climate. An event sponsored by the ISME Ambassador Programme. Lisbon, December 16, 2016. – “Studying microbial responses to the combined effects of global climate changes and pollution in marine environments.”
News and Media appearance
- The DNA authentication technology originally idealized by Newton Gomes and implemented by Francisco Coelho has been feature in more than 25 paper and online journals, and in all main Portuguese channels (RTP, SIC, TVI).
- The European Comission service news "Science for Environmental Policy" issue a press release highlighting the results of the article "Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities" . Science for Environemntal Policy reaches more than 18000 readers (policymakers, academics and business people)
Juri participation
- Principal Jury of the internship of the Degree in Biology (2019). Papel das bactérias na reciclagem de nutrientes e produção de biomassa em ambientes aquáticos. By Eduardo Miguel Freire Gomes at the Department of Biology, Aveiro University.
- Principal Jury of Degree project (2018). Caracterização microbiológica da microcamada superficial da Ria de Aveiro. Degree project by Ana Rita Carvalho at the Department of Biology, Aveiro University.
- Principal Jury of Master in Microbiology (2017). Isolation and characterization of halophilic bacteria from salt pans of Ria de Aveiro. Master Thesis Defense by Sofia Maria de Albuquerque Cruzeiro at the Department of Biology, Aveiro University.
- Principal Jury of Master in Molecular and Cellular Biology (2016). Bacterial diversity in groundwater samples from Estremenho Karst Massif (Portugal) revealed by 16S rDNA pyrosequencing. Master Thesis Defense by Pedro Miguel Pinheiro Saraiva at the Department of Biology, Aveiro University.
- Principal Jury of Master in Microbiology (2016). Increase of biosurfactant production by cocultivation of producing bacteria with biofilm forming strains. Master Thesis Defense by Ana Rita da Rocha Alves at the Department of Biology, Aveiro University.
- Principal Jury of Master in Marine Biology (2014). Contribution to the study of Cod Gadus morhua. Master Thesis Defense by Fernando José Duarte Fernandes at the Department of Biology, Aveiro University.
Teaching and scientific supervision
From 2009 to 2012 I have participated in the scientific supervision of several students:
- Letícia Novais (Master student)
- José Medeiros (Master student)
- Sara Sousa (final degree project)
- João Simões (final degree project)
- Daniela Framegas (final degree project)
Scientific monitor in Aveiro University summer academy from 2010-2012
Reviewer in International Journals
CESAM Funding:
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