Louvado, A, Cleary, DFR, Pereira, LF, Coelho, FJRC, Pousao-Ferreira, P, Ozorio, ROA , Gomes, NCM (2021) Humic substances modulate fish bacterial communities in a marine recirculating aquaculture system.
Aquaculture, 544
.
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Ferreira M.R.S., Cleary D.F.R., Coelho F.J.R.C., Gomes N.C.M., Huang Y.M., Polonia A.R.M., de Voogd N.J. (2020) Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor.
ANNALS OF MICROBIOLOGY, 70
, (1), .
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Louvado A., Coelho F.J.R.C., Palma M., Tavares L.C., Ozorio R.O.A., Magnoni L., Viegas I., Gomes N.C.M. (2020) Effect of glycerol feed-supplementation on seabass metabolism and gut microbiota.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,
.
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Pires, ACC, Oliveira, V, Cleary, DFR, Polónia AR, Coelho, FJRC, Waheed, Z, de Voogd, NJ, Gomes, NCM (2020) Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia.
Marine Biology Research, 16
729-743.
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Duarte L.N., Coelho F.J.R.C., Cleary D.F.R., Bonifacio D., Martins P., Gomes N.C.M. (2019) Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): A seasonal survey.
AQUACULTURE, 503
59-69.
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Cleary D.F.R., Swierts T., Coelho F.J.R.C., Polonia A.R.M., Huang Y.S.M., Ferreira M.R.S., Putchakarn S., Carvalheiro L., van der Ent E., Ueng J.P., Gomes N.C.M., de Voogd N.J. (2019) The sponge microbiome within the greater coral reef microbial metacommunity.
NATURE COMMUNICATIONS, 10
.
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Duarte L.N., Coelho F.J.R.C., Oliveira V., Cleary D.F.R., Martins P., Gomes N.C.M. (2019) Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production.
PLOS ONE, 14
, (1), .
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Louvado A., Coelho F.J.R.C., Oliveira V., Gomes H., Cleary D.F.R., Simoes M.M.Q., Cunha A., Gomes N.C.M. (2019) Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment.
JOURNAL OF APPLIED MICROBIOLOGY, 127
, (1), 134-149.
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Coelho F.J.R.C., Cleary D.F.R., Gomes N.C.M., Polonia A.R.M., Huang Y.M., Liu L.L., de Voogd N.J. (2018) Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.
MICROBIAL ECOLOGY, 75
, (1), 239-254.
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Boaventura C.M., Coelho F.J.R.C., Martins P.T., Pires A.C.C., Duarte L.N., Uetanabaro A.P.T., Cleary D.F.R., Gomes N.C.M. (2018) Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis.
AQUACULTURE, 490
321-328.
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Martins P., Coelho F.J.R.C., Cleary D.F.R., Pires A.C.C., Marques B., Rodrigues A.M., Quintino V., Gomes N.C.M. (2018) Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system.
AQUACULTURE, 490
240-250.
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Louvado A., Coelho F.J.R.C., Gomes H., Cleary D.F.R., Cunha A., Gomes N.C.M. (2018) Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 25
, (32), 32756-32766.
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Polonia A.R.M., Cleary D.F.R., Coelho F.J.R.D., Becking L.E., de Voogd N.J., Toha A.H.A., Gomes N.C.M. (2018) Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIOLOGY RESEARCH, 14
, (6), 537-550.
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Cleary D.F.R., Coelho F.J.R.C., Oliveira V., Gomes N.C.M., Polonia A.R.M. (2017) Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment.
Marine Ecology, 38
, (2), -e12411.
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Polonia A.R.M., Cleary D.F.R., Freitas R., Coelho F.J.R.C., de Voogd N.J., Gomes N.C.M. (2016) Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment.
MARINE GENOMICS, 29
69-80.
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Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution.
MOLECULAR ECOLOGY, 25
, (18), 4645-4659.
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Coelho F.J.R.C., Louvado A., Domingues P.M., Cleary D.F.R., Ferreira M., Almeida A., Cunha M.R., Cunha A., Gomes N.C.M. (2016) Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz.
SCIENTIFIC REPORTS, 6
, (35272), .
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Martins P., Navarro R.V.V., Coelho F.J.R.C., Gomes N.C.M. (2015) Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples.
AQUACULTURE, 435
137-142.
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Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Lillebo A.I., Almeida A., Cunha A., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R., Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.
GLOBAL CHANGE BIOLOGY, 21
, (5), 1871-1886.
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Santos L., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha Â., Almeida A. (2014) Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro).
Journal Of Plankton Research, 36
, (1), 230-242.
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Rocha J., Coelho F.J.R.C., Peixe L., Gomes N.C.M., Calado R. (2014) Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.
SCIENTIFIC REPORTS, 4
.
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Domingues P.M., Louvado A., Oliveira V., Coelho F.J., Almeida A., Gomes N.C.M., Cunha A. (2013) Selective cultures for the isolation of biosurfactant producing bacteria: comparison of environmental inocula and hydrophobic carbon sources.
Preparative Biochemistry & Biotechnology, 43
, (3), 237-55.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.
GLOBAL CHANGE BIOLOGY, 19
, (8), 2584-2595.
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Coelho, F.J.R.C,Santos, A.L. Coimbra, J, Almeida, A, Cunha, A, Cleary, D.F.R, Calado, R., Gomes, N.C.M. (2013) Interactive effects of global climate change and pollution on marine microbes: The way ahead.
Ecology And Evolution , Volume 3
, (Issue 6), .
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Louvado A., Coelho F.J.R.C., Domingues P., Gomes NCM, Santos A.L., Almeida A., Cunha A . (2012) Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer.
Journal Of Microbiology And Biotechnology, 22
, (3), 283–291.
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Coelho F.J.R.C., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M., Cunha A. (2011) Exploring hydrocarbonoclastic bacterial communities in the estuarine surface microlayer.
Aquatic Microbial Ecology,
, (64), 185-195.
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Santos L.M.P., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2011) Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics.
FEMS Microbiology Ecology, 77
, (3), 636-646.
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Oliveira V., Santos A.L., Coelho F., Gomes N.C.M., Silva H., Almeida A., Cunha A. (2010) Effects of monospecific banks of salt marsh vegetationon sediment bacterial communities.
Microbial Ecology, 60
, (1), 167–179.
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Coelho, F.J.R.C. (2021) From marine ecology to biotechnological entrepreneurship. 1st Microbiome PT Summit, February 4, 2021, Online event.
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Louvado A., Coelho F.J.R.C., Palma M., Osório R., Magnoni L., Viegas I., Gomes N. (2019) Effect of glycerol feed-supplementation on seabass (Dicentrarchus labrax) gut microbiota. . 15th Symposium on Bacterial Genetics and Ecology (BAGECO15), 26–30 May., Lisbon, Portugal.
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Louvado A., Pereira L., Coelho F., Pousão-Ferreira P., Ozório R., Gomes N. (2019) Humic acid modulates bacterioplankton and fish microbiome in a recirculating aquaculture system (RAS). . 15th Symposium on Bacterial Genetics and Ecology (BAGECO15), 26–30 May, Lisbon, Portugal.
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Coelho, F.J.R.C. (2016) Studying microbial responses to the combined effects of global climate changes and pollution in marine environments. 1st Advanced Seminars in Microbial Ecology. Symbioses, biotechnology and industry in a changing climate. An event sponsored by the ISME Ambassador Programme , December 16, Lisbon, Portugal.
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Coelho FJRC, Cleary DFR, Ferreira M, Gomes NCM (2015) Response of sediment archaeal communities to ocean acidification and oil pollution. Bioremediation of oil-contaminated environments, 11 May 2015, Braga, Portugal.
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Sena, C., Azevedo, M.R., Ribeiro, S., Gomes, N., Coelho, F., Marques, A., Cunha, A., Almeida, A., Pinheiro, L.M. & Expedition 351 Scientists. (2015) Water-rock interactions and geomicrobiology in a sedimentary basin that records large volcanic eruptions – IODP Expedition 351. Research Day - University of Aveiro, 20 May, Aveiro, Portugal.
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Coelho, F.J.R.C. (2015) Response of sediment archaeal communities to ocean acidification and oil pollution. Bioremediation of oil-contaminated environments, May 11, 2015, Braga, Portugal.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Almeida A., Cunha Â., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Ocean acidification and oil contamination have a synergistic effect on microbial community composition. FEMS, 2013, Leipzig, Alemanha.
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Santos L., Batista I., Santos A.L., Coelho F.J.R.C., Gomes, N., Dias, J.M., Cunha, Â., Almeida, A. (2013) Heterotrophic activity in the surface microlayer of an estuarine system (Ria de Aveiro). FEMS, 2013, Leipzig, Germany.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Calado R., Cleary D.R.F., Gomes N.C.M. (2013) Synergistic impact of global climate change and oil pollution on estuarine sediment communities simulated in laboratory microcosms. 27º Congresso Brasileiro de Microbiologia, 29 de September - 3 October 2013, Natal, Brasil.
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Coelho F.J.R.C., Rocha R. J.M., Pires A.C.C., Castanheira J., Costa R., Lillebø A.I., Almeida A., Cunha Â., Calado R., Cleary D., Gomes N.C.M. (2012) Marine experimental life support system for microbial communities. International Society for Microbial Ecology, 2012, Copenhagen, Denmark.
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Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria De Aveiro. Jornadas da Ria de Aveiro, 2-4 de Maio 2011, Aveiro, Portugal.
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Coelho F., Sousa S., Santos L., Santos A. L., Almeida A., Cunha A. (2009) Bacterioneuston of Ria de Aveiro: abundance, heterotrophic activity and degradation of PAH. VIII Simpósio de Pós-Graduação do DeBio, 28-29 Abril, Aveiro, .
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Coelho F., Moreira A., Simões C., Gomes F., Sousa S., Ramos A., Louvado A., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) Microbiologia Ambiental: potencial biotecnológico da Ria de Aveiro. Congresso Internacional de História e Património - Aveiro 250 anos, 4-5 july, Aveiro, Portugal.
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Coelho F., Sousa S., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading bacterial community in an estuarine system. Biological Responses to Chemical Contaminants: from molecular to community level. Interdisciplinary Symposium for Young Investigators, 2-4 September, Aveiro, Portugal.
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Oliveira V., Santos A.L., Coelho F., Aguiar C., Sousa S., Lopes S., Gomes N.C.M, Almeida A., Cunha A. (2009) Bacterial in salt-marsh sediments: Influence of plant colonization on abundance, Physiological diversity and heterotrophic activity (Ria de Aveiro, Portugal). III Internacional Conference on Environmental, Industrial and Applied Microbiology, 2 a 4 de December , Lisbon, Portugal.
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Oliveira V., Santos A.L., Coelho F., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Structural diversity, physiological profiles and abundance of sulfate-reducing bacteria in bacterial communities of salt-marsh sediments (Ria de Aveiro, Portugal). 11th Symposium on Aquatic Microbiology - SAME11, 3 August to 4 September, Piran, Slovenia.
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Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. Biological Responses to Chemical Contaminants: from molecular to community level, 2-4 September 2009, Aveiro, Portugal.
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Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Biotechnological Potential of Surfactant Resistant Bacteria from the Surface Microlayer. International Meeting on Marine Resources 09, 16-18 November, Peniche, Portugal.
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Santos A.L., Coelho F., Santos L., Mendes C., Louvado A., Sousa S., Lopes S., Moreira A., Gomes F., Henriques I., Almeida A., Correia A., Gomes N.C.M., Cunha A. (2009) Characterization and Biotechnological Potential of Bacterioneuston. Eurobiofilms, 2-5 September 2009, Rome, Italy.
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Coelho F.J.R.C., Sousa S., Santos A. .L., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading Bacterial Community from the Sea Surface Microlayer in an estuarine system. III Internacional Conference on Environmental, Industrial and Applied Microbiology, 2 a 4 de December de 2009, Lisbon, Portugal.
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Coelho F. L. , Santos L, Santos A. L. , Almeida A., Cunha A. (2008) Comparative analysis of bacterioneuston and bacterioplankton along a gradient of contamination with polycyclic aromatic hydrocarbon. 43rd Estuarine & Coastal Sciences Association Internation Symposium , 7-9 de Fevereiro , Lisboa, Portugal.
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Coelho F., Santos L., Santos A.L., Almeida A., Cunha A. (2008) Microrganismos nas águas da Ria de Aveiro: Comparação entre bacterioneuston e bacterioplâncton ao longo de um gradiente de contaminação. Encontro de Zonas Húmidas: desafios e oportunidades de gestão sustentável, 1-2 February, Águeda, Portugal.
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Coelho F., Santos L., Santos A. L., Almeida A., Cunha A. (2008) Comparative analysis of bacterioneuston and bacterioplankton along a gradient of contamination with polycyclic aromatic hydrocarbon. VII Simpósio de Pós-Graduação do DeBio, 29-30 Abril, , .
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Cunha A., Santos L., Coelho F., Almeida A. (2006) Heterotrophic activity of bacterioneuston and bacterioplankton in an estuarine system (Ria de Aveiro, Portugal). ASLO Summer Meeting, 4 a 9 de Junho de 2006, Victoria, Canada.
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Cunha A., LIma E., Matos P., Coelho F., Loureiro N., Almeida A. (2006) Abundance, physiological diversity and activity of salt marsh bacteriobenthos (Ria de Aveiro, Portugal). 5º Simpósio sobre a Margem Ibérica Atlântica, 2 a 4 de Novembro de 2006, Aveiro, Portugal.
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Almeida A,, Loureiro N., Baptista I., Cunha A., Coelho F., Santos L. (2006) Relashionship between bacterial membrane integrity and bacterial production in the surface microlayer of the estuarine system Ria de Aveiro. 5º Simpósio sobre a Margem Ibérica Atlântica. 5º Simpósio sobre a Margem Ibérica Atlântica, 2-4 Novembro , Aveiro, Portugal.
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Almeida MA, Baptista I, Coelho F, Cunha A, Loureiro.N, Salvador S, Santos, L (2006) Vertical variation of viruses-to-bacterium ratio in a estuarine System (Ria de Aveiro, Portugal). European EMBS 41, 4-8 de Setembro , Cork, reland.
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Santos L, Almeida MA, Coelho F, Cunha MA, Lima E, Loureiro N, Matos P, Salvador S, Pinheiro LM (2006) Distribution, activity and diversity of microbial communities from sediments of the mud volcano Mercator (Gulf of Cadiz). International conference and 15th anniversary training trough research post-cruise meeting, 29 January-4 February, Moscow/Zvenigorod, Russia.
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Coelho F., Santos L., Almeida A., Cunha A. (2006) Comparative Analysis of Bacterioneuston and Bacterioplankton in an Estuarine System (Ria De Aveiro, Portugal). 5º Simpósio sobre a Margem Ibérica Atlântica, 2-4 November, Aveiro, Portugal.
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