Almeida J.F., Marques M., Oliveira V., Egas C., Mil-Homens D., Viana R., Cleary D.F.R., Huang Y.M., Fialho A.M., Teixeira M.C., Gomes N.C.M., Costa R., Keller-Costa T. (2023) Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities Against Human Pathogens.
Marine Drugs, 21
, (1), 34.
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Boaventura J., Caetano T., Mendo S., Cleary DFR., Gomes NCM., Oliveira V (2022) Draft Genome Sequence of Vibrio mediterranei Strain CyArs1.
Microbiology Resource Announcements,
e00155-22.
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Oliveira V., Polónia A.R.M., Cleary D.F.R., Huang Y.u.s.h.e.n.g. .M., de Voogd N.J., Keller-Costa T., Costa R., Gomes N.C.M. (2022) Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts.
Microbiological Research, 265
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Cleary, D.F.R., Polónia, A.R.M., Swierts, T., Coelho, F.J.R.C., de Voogd, N.J., Gomes, N.C.M. (2022) Spatial and environmental variables structure sponge symbiont communities.
Molecular Ecology, 31
, (19), 4932-4948.
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Sousa, J. M. G., Louvado, A., Coelho, F. J. R. C., Oliveira, V., Oliveira, H., Cleary, D. F. R., Gomes, N. C. M. (2022) In vitro study of the modulatory effects of heat-killed bacterial biomass on aquaculture bacterioplankton communities.
Scientific Reports,
1-13.
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Stuij, T. M., Cleary, D.F.R., Gomes, N.C.M., Mehrotra, R., Visser, P. M., Speksnijder, A. G., Hoeksema, B. W. (2022) High diversity of benthic cyanobacterial mats on coral reefs of Koh Tao, Gulf of Thailand.
Coral Reefs,
1-15.
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Ferreira M.R., Cleary D.F.R., Bat N.K., Polónia A.R., Gomes, N.C.M. (2022) Assessing the core microbial symbionts of jellyfish in Indonesian and Vietnamese marine lakes.
Journal Of The Marine Biological Association Of The United Kingdom,
486-494.
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Oliveira V., Polonia A.R.M., Cleary D.F.R., Huang Y.S.M., de Voogd N.J., da Rocha U.N., Gomes N.C.M. (2021) Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification.
MOLECULAR ECOLOGY RESOURCES, 21
, (1), 110-121.
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Louvado, A, Cleary, DFR, Pereira, LF, Coelho, FJRC, Pousao-Ferreira, P, Ozorio, ROA , Gomes, NCM (2021) Humic substances modulate fish bacterial communities in a marine recirculating aquaculture system.
Aquaculture, 544
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Cleary D.F.R., Polonia A.R.M., Huang Y.M., Swierts T. (2020) Compositional variation between high and low prokaryotic diversity coral reef biotopes translates to different predicted metagenomic gene content.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,
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Ferreira M.R.S., Cleary D.F.R., Coelho F.J.R.C., Gomes N.C.M., Huang Y.M., Polonia A.R.M., de Voogd N.J. (2020) Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor.
ANNALS OF MICROBIOLOGY, 70
, (1), .
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Oliveira, V., Martins, P., Marques, B., Cleary, D.F.R., Lillebø, A.I., Calado, R. (2020) Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere.
Scientific Reports, 10
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Polonia A.R.M., Cleary D.F.R., Gauvin-Bialecki A., de Voogd N.J. (2020) Archaeal communities of low and high microbial abundance sponges inhabiting the remote western Indian Ocean island of Mayotte.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,
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Cleary D.F.R., Pol?nia A.R.M., Reijnen B.T., Berumen M.L., de Voogd N.J. (2020) Prokaryote Communities Inhabiting Endemic and Newly Discovered Sponges and Octocorals from the Red Sea.
MICROBIAL ECOLOGY, 80
, (1), 103-119.
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Jeliazkov A., Mijatovic D., Chantepie S., Andrew N., Arlettaz R., Barbaro L., Barsoum N., Bartonova A., Belskaya E., Bonada N., Brind'Amour A., Carvalho R., Castro H., Chmura D., Choler P., Chong-Seng K., Cleary D., Cormont A., Cornwell W., de Campos R., de Voogd N., Doledec S., Drew J., Dziock F., Eallonardo A., Edgar M.J., Farneda F., Hernandez D.F., Frenette-Dussault C., Fried G., Gallardo B., Gibb H., Goncalves-Souza T., Higuti J., Humbert J.Y., Krasnov B.R., Le Saux E., Lindo Z., Lopez-Baucells A., Lowe E., Marteinsdottir B., Martens K., Meffert P., Mellado-Diaz A., Menz M.H.M., Meyer C.F.J., Miranda J.R., Mouillot D., Ossola A., Pakeman R., Pavoine S., Pekin B., Pino J., Pocheville A., Pomati F., Poschlod P., Prentice H.C., Purschke O., Raevel V., Reitalu T., Renema W., Ribera I., Robinson N., Robroek B., Rocha R., Shieh S.H., Spake R., Staniaszek-Kik M., Stanko M., Tejerina-Garro F.L., ter Braak C., Urban M.C., van Klink R., Villeger S., Wegman R., Westgate M.J., Wolff J., Zarnowiec J., Zolotarev M., Chase J.M. (2020) A global database for metacommunity ecology, integrating species, traits, environment and space.
SCIENTIFIC DATA, 7
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Daniel F.R.C., Ana R.M.P. (2020) Marine lake populations of jellyfish, mussels and sponges host compositionally distinct prokaryotic communities.
HYDROBIOLOGIA, 847
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Pires, ACC, Oliveira, V, Cleary, DFR, Polónia AR, Coelho, FJRC, Waheed, Z, de Voogd, NJ, Gomes, NCM (2020) Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia.
Marine Biology Research, 16
729-743.
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Cleary D.F.R., Ferreira M.R.S., Bat N.K., Polonia A.R.M., Gomes N.C.M., de Voogd N.J. (2020) Bacterial composition of sponges, sediment and seawater in enclosed and open marine lakes in Ha Long Bay Vietnam.
MARINE BIOLOGY RESEARCH, 16
, (1), 18-31.
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Pires A.C.C., Cleary D.F.R., Polonia A.R.M., Lim S.C., De Voogd N.J., Oliveira V., Gomes N.C.M. (2019) Comparison of bacterial communities associated with Xestospongia testudinaria, sediment and seawater in a Singaporean coral reef ecosystem.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, 99
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Cleary D.F.R., Swierts T., Coelho F.J.R.C., Polonia A.R.M., Huang Y.S.M., Ferreira M.R.S., Putchakarn S., Carvalheiro L., van der Ent E., Ueng J.P., Gomes N.C.M., de Voogd N.J. (2019) The sponge microbiome within the greater coral reef microbial metacommunity.
NATURE COMMUNICATIONS, 10
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Cleary D.F.R., Gomes N.C.M. (2019) Baseline information on prokaryotic and microeukaryotic plankton communities inside and outside of Indonesian marine lakes.
JOURNAL OF SEA RESEARCH, 148
23-32.
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Polonia A.R.M., Cleary D.F.R. (2019) Archaeal communities in sponge, sediment and water from marine lakes and open water habitats.
MARINE BIOLOGY RESEARCH, 15
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Cleary D.F.R., Polonia A.R.M., Huang Y.M., Putchakarn S., Gomes N.C.M., de Voogd N.J. (2019) A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs.
FEMS MICROBIOLOGY ECOLOGY, 95
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Louvado A., Coelho F.J.R.C., Oliveira V., Gomes H., Cleary D.F.R., Simoes M.M.Q., Cunha A., Gomes N.C.M. (2019) Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment.
JOURNAL OF APPLIED MICROBIOLOGY, 127
, (1), 134-149.
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Coelho F.J.R.C., Cleary D.F.R., Gomes N.C.M., Polonia A.R.M., Huang Y.M., Liu L.L., de Voogd N.J. (2018) Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.
MICROBIAL ECOLOGY, 75
, (1), 239-254.
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Monteiro M., Seneca J., Torgo L., Cleary D.F.R., Gomes N.C.M., Santoro A.E., Magalhaes C. (2018) Environmental controls on estuarine nitrifying communities along a salinity gradient.
AQUATIC MICROBIAL ECOLOGY, 80
, (2), 167-180.
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Cleary D.F.R., Polonia A.R.M. (2018) Bacterial and archaeal communities inhabiting mussels, sediment and water in Indonesian anchialine lakes.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 111
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Cleary D.F.R., Polonia A.R.M., de Voogd N.J. (2018) Prokaryote composition and predicted metagenomic content of two Cinachyrella Morphospecies and water from West Papuan Marine Lakes.
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Cleary D.F.R., Polonia A.R.M., Becking L.E., de Voogd N.J., Purwanto ., Gomes H., Gomes N.C.M. (2018) Compositional analysis of bacterial communities in seawater, sediment and high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIODIVERSITY, 48
, (4), 1889-1901.
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de Voogd N.J., Gauvin-Bialecki A., Polonia A.R.M., Cleary D.F.R. (2018) Assessing the bacterial communities of sponges inhabiting the remote western Indian Ocean island of Mayotte.
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Cleary D.F.R., Polonia A.R.M., de Voogd N.J. (2018) Bacterial Communities Inhabiting the Sponge Biemna fortis, Sediment and Water in Marine Lakes and the Open Sea.
MICROBIAL ECOLOGY, 76
, (3), 610-624.
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Louvado A., Coelho F.J.R.C., Gomes H., Cleary D.F.R., Cunha A., Gomes N.C.M. (2018) Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 25
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MARINE BIOLOGY RESEARCH, 14
, (6), 537-550.
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Swierts T., Cleary D.F.R., de Voogd N.J. (2018) Prokaryotic communities of Indo-Pacific giant barrel sponges are more strongly influenced by geography than host phylogeny.
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Cleary D.F.R., Coelho F.J.R.C., Oliveira V., Gomes N.C.M., Polonia A.R.M. (2017) Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment.
Marine Ecology, 38
, (2), -e12411.
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Polonia A.R.M., Cleary D.F.R., Freitas R., Gomes N.C.M., de Voogd N.J. (2017) Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment.
JOURNAL OF SEA RESEARCH, 119
37-53.
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Sousa A.I., Santos D.B., da Silva E.F., Sousa L.P., Cleary D.F.R., Soares A.M.V.M., Lillebo A.I. (2017) 'Blue Carbon' and Nutrient Stocks of Salt Marshes at a Temperate Coastal Lagoon (Ria de Aveiro, Portugal).
SCIENTIFIC REPORTS, 7
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Sousa A.I., Calado R., Cleary D.F.R., Nunes C., Coimbra M.A., Serodio J., Lillebo A.I. (2017) Effect of spatio-temporal shifts in salinity combined with other environmental variables on the ecological processes provided by Zostera noltei meadows.
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Polonia A.R.M., Cleary D.F.R., Freitas R., Coelho F.J.R.C., de Voogd N.J., Gomes N.C.M. (2016) Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment.
MARINE GENOMICS, 29
69-80.
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Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2016) Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes.
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Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution.
MOLECULAR ECOLOGY, 25
, (18), 4645-4659.
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Cleary D.F.R., Polonia A.R.M., Sousa A.I., Lillebo A.I., Queiroga H., Gomes N.C.M. (2016) Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima.
PLANT BIOLOGY, 18
, (5), 824-834.
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Coelho F.J.R.C., Louvado A., Domingues P.M., Cleary D.F.R., Ferreira M., Almeida A., Cunha M.R., Cunha A., Gomes N.C.M. (2016) Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz.
SCIENTIFIC REPORTS, 6
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Cleary, DFR (2016) Diversity and composition of plants, butterflies and odonates in an Imperata cylindrica grassland landscape in East Kalimantan, Indonesia.
JOURNAL OF TROPICAL ECOLOGY, 32
555-560.
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Cleary D.F.R., Polonia A.R.M., Renema W., Hoeksema B.W., Rachello-Dolmen P.G., Moolenbeek R.G., Budiyanto A., Yahmantoro ., Tuti Y., Giyanto ., Draisma S.G.A., van Reine W.F.P., Hariyanto R., Gittenberger A., Rikoh M.S., de Voogd N.J. (2016) Variation in the composition of corals, fishes, sponges, echinoderms, ascidians, molluscs, foraminifera and macroalgae across a pronounced in-to-offshore environmental gradient in the Jakarta Bay-Thousand Islands coral reef complex.
MARINE POLLUTION BULLETIN, 110
, (2), 701-717.
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Huang Y.S.M., de Voogd N.J., Cleary D.F.R., Li T.H., Mok H.K., Ueng J.P. (2016) Biodiversity pattern of subtidal sponges (Porifera: Demospongiae) in the Penghu Archipelago (Pescadores), Taiwan.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, 96
, (2), 417-427.
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Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2015) Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 107
, (3), 821-834.
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de Voogd N.J., Cleary D.F.R., Polonia A.R.M., Gomes N.C.M. (2015) Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.
FEMS MICROBIOLOGY ECOLOGY, 91
, (4), .
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Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Lillebo A.I., Almeida A., Cunha A., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R., Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.
GLOBAL CHANGE BIOLOGY, 21
, (5), 1871-1886.
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Pegoraro N., Calado R., Duarte L.N., Manco S.C., Fernandes F.J., Polonia A.R.M., Cleary D.E.R., Gomes N.C.M. (2015) Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production.
JOURNAL OF FOOD PROTECTION, 78
, (5), 983-989.
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Polonia A.R.M., Cleary D.F.R., Freitas R., de Voogd N.J., Gomes N.C.M. (2015) The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment.
MOLECULAR ECOLOGY, 24
, (2), 409-423.
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Cleary D.F.R., de Voogd N.J., Polonia A.R.M., Freitas R., Gomes N.C.M. (2015) Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.
MICROBIAL ECOLOGY, 70
, (4), 889-903.
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Polonia A.R.M., Cleary D.F.R., de Voogd N.J., Renema W., Hoeksema B.W., Martins A., Gomes N.C.M. (2015) Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago.
SCIENCE OF THE TOTAL ENVIRONMENT, 537
139-151.
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Rotllant G., Simeo C.G., Guerao G., Sastre M., Cleary D.F.R., Calado R., Estevez A. (2014) Interannual variability in the biochemical composition of newly hatched larvae of the spider crab Maja brachydactyla (Decapoda, Majidae).
MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE, 35
, (3), 298-307.
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Gomes N.C.M., Cleary D.F.R., Pires A.C.C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2014) Assessing variation in bacterial, composition between the rhizospheres of two mangrove tree species.
Estuarine Coastal And Shelf Science, 139
40-45.
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Polonia A.R.M., Cleary D.F.R., Duarte L.N., de Voogd N.J., Gomes N.C.M. (2014) Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia.
Microbial Ecology, 67
, (3), 553-567. 1432-184X.
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Cleary D.F.R., Polonia A.R.M., Renema W., Hoeksema B.W., Wolstenholme J., Tuti Y., de Voogd N.J. (2014) Coral reefs next to a major conurbation: a study of temporal change (1985-2011) in coral cover and composition in the reefs of Jakarta, Indonesia.
Marine Ecology Progress Series, 501
89-98.
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Oliveira V., Gomes N.C.M., Cleary D.F.R., Almeida A., Silva A.M.S., Simoes M.M.Q., Silva H., Cunha A. (2014) Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons.
FEMS MICROBIOLOGY ECOLOGY, 90
, (3), 647-662.
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Hudson L.N., Newbold T., Contu S., Hill S.L.L., Lysenko I., De Palma A., Phillips H.R.P., Senior R.A., Bennett D.J., Booth H., Choimes A., Correia D.L.P., Day J., Echeverria-Londono S., Garon M., Harrison M.L.K., Ingram D.J., Jung M., Kemp V., Kirkpatrick L., Martin C.D., Pan Y., White H.J., Aben J., Abrahamczyk S., Adum G.B., Aguilar-Barquero V., Aizen M.A., Ancrenaz M., Arbelaez-Cortes E., Armbrecht I., Azhar B., Azpiroz A.B., Baeten L., Baldi A., Banks J.E., Barlow J., Batary P., Bates A.J., Bayne E.M., Beja P., Berg A., Berry N.J., Bicknell J.E., Bihn J.H., Bohning-Gaese K., Boekhout T., Boutin C., Bouyer J., Brearley F.Q., Brito I., Brunet J., Buczkowski G., Buscardo E., Cabra-Garcia J., Calvino-Cancela M., Cameron S.A., Cancello E.M., Carrijo T.F., Carvalho A.L., Castro H., Castro-Luna A.A., Cerda R., Cerezo A., Chauvat M., Clarke F.M., Cleary D.F.R., Connop S.P., D'Aniello B., da Silva P.G., Darvill B., Dauber J., Dejean A., Diekotter T., Dominguez-Haydar Y., Dormann C.F., Dumont B., Dures S.G., Dynesius M., Edenius L., Elek Z., Entling M.H., Farwig N., Fayle T.M., Felicioli A., Felton A.M., Ficetola G.F., Filgueiras B.K.C., Fonte S.J., Fraser L.H., Fukuda D., Furlani D., Ganzhorn J.U., Garden J.G., Gheler-Costa C., Giordani P., Giordano S., Gottschalk M.S., Goulson D., Gove A.D., Grogan J., Hanley M.E., Hanson T., Hashim N.R., Hawes J.E., Hebert C., Helden A.J., Henden J.A., Hernandez L., Herzog F., Higuera-Diaz D., Hilje B., Horgan F.G., Horvath R., Hylander K., Isaacs-Cubides P., Ishitani M., Jacobs C.T., Jaramillo V.J., Jauker B., Jonsell M., Jung T.S., Kapoor V., Kati V., Katovai E., Kessler M., Knop E., Kolb A., Korosi A., Lachat T., Lantschner V., Le Feon V., LeBuhn G., Legare J.P., Letcher S.G., Littlewood N.A., Lopez-Quintero C.A., Louhaichi M., Lovei G.L., Lucas-Borja M.E., Luja V.H., Maeto K., Magura T., Mallari N.A., Marin-Spiotta E., Marshall E.J.P., Martinez E., Mayfield M.M., Mikusinski G., Milder J.C., Miller J.R., Morales C.L., Muchane M.N., Muchane M., Naidoo R., Nakamura A., Naoe S., Nates-Parra G., Navarrete Gutierrez D.A., Neuschulz E.L., Noreika N., Norfolk O., Noriega J.A., Noske N.M., O'Dea N., Oduro W., Ofori-Boateng C., Oke C.O., Osgathorpe L.M., Paritsis J., Parra-H A., Pelegrin N., Peres C.A., Persson A.S., Petanidou T., Phalan B., Philips T.K., Poveda K., Power E.F., Presley S.J., Proenca V., Quaranta M., Quintero C., Redpath-Downing N.A., Reid J.L., Reis Y.T., Ribeiro D.B., Richardson B.A., Richardson M.J., Robles C.A., Rombke J., Romero-Duque L.P., Rosselli L., Rossiter S.J., Roulston T.H., Rousseau L., Sadler J.P., Safian S., Saldana-Vazquez R.A., Samnegard U., Schuepp C., Schweiger O., Sedlock J.L., Shahabuddin G., Sheil D., Silva F.A.B., Slade E.M., Smith-Pardo A.H., Sodhi N.S., Somarriba E.J., Sosa R.A., Stout J.C., Struebig M.J., Sung Y.H., Threlfall C.G., Tonietto R., Tothmeresz B., Tscharntke T., Turner E.C., Tylianakis J.M., Vanbergen A.J., Vassilev K., Verboven H.A.F., Vergara C.H., Vergara P.M., Verhulst J., Walker T.R., Wang Y., Watling J.I., Wells K., Williams C.D., Willig M.R., Woinarski J.C.Z., Wolf J.H.D., Woodcock B.A., Yu D.W., Zaitsev A.S., Collen B., Ewers R.M., Mace G.M., Purves D.W., Scharlemann J.P.W., Purvis A. (2014) The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts.
ECOLOGY AND EVOLUTION, 4
, (24), 4701-4735.
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Leal M.C., Nunes C., Kempf S., Reis A., Lopes da Silva T., Serôdio J., Cleary D.F.R., Calado R. (2013) Effect of light, temperature and diet on the fatty acid profile of the tropical sea anemone Aiptasia pallida.
Aquaculture Nutrition, 19
818-826.
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Gomes N.C.M., Cruz S.C., Pires A.C.C., Gonçalves S.F., Calado R., Cleary D.F.R., Loureiro S. (2013) Richness and composition of sediment bacterial assemblages in an Atlantic port environment.
Science Of The Total Environment, 452-453
172-180.
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Calado R., Guerao G., Gras N., Cleary D.F.R., Rotllant G. (2013) Contrasting habitats occupied by sibling spider crabs Maja squinado and M. brachydactyla (Brachyura, Majidae) can influence the biochemical variability displayed by newly hatched larvae.
Journal Of Plankton Research, 35
684-688.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.
GLOBAL CHANGE BIOLOGY, 19
, (8), 2584-2595.
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Cleary D.F.R., Becking L.E., de Voogd N.J., Pires A.C.C., Polónia A.R.M., Egas C., Gomes N.C.M. (2013) Habitat and host related variation in sponge bacterial symbiont communities in Indonesian waters.
FEMS Microbiology Ecology, 85
, (3), 465–482.
Ver mais
Martins P., Cleary D.F.R., Pires A.C.C., Rodrigues A.M., Quintino V., Calado R., Gomes N.C.M. (2013) Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis.
PLOS ONE, 8
, (11), .
Ver mais
Swierts T., Peijnenburg K., de Leeuw C., Cleary D.F.R., Hornlein C., Setiawan E., Worheide G., Erpenbeck D., de Voogd N.J. (2013) Lock, Stock and Two Different Barrels: Comparing the Genetic Composition of Morphotypes of the Indo-Pacific Sponge Xestospongia testudinaria.
PLoS One, 8
, (9), e74396.
Ver mais
Becking L.E., Cleary D.F.R., de Voogd N.J. (2013) Sponge species composition, abundance, and cover in marine lakes and coastal mangroves in Berau, Indonesia.
Marine Ecology Progress Series, 481
105-120.
Ver mais
de Voogd N.J., Cleary D.F.R., Dekker F. (2013) The coral-killing sponge Terpios hoshinota invades Indonesia.
CORAL REEFS, 32
, (3), 755-755.
Ver mais
Cleary D.F.R., Smalla K., Mendonça-Hagler L.C.S., Gomes N.C.M. (2012) Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing.
PLoS ONE, 7
, (1), e29380.
Ver mais
Cleary D.F.R., Oliveira V., Gomes N.C.M., Pereira A. , Henriques I., Marques B., Almeida A., Cunha A., Correia A., Lillebø A.I. (2012) Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh.
Marine Pollution Bulletin, 64
, (2), 263-271.
Ver mais
Pires A.C.C., Cleary D.F.R., Almeida A., Cunha A., Dealtry S., Mendonca-Hagler L.C.S., Smalla K., Gomes N.C.M. (2012) Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78
, (16), 5520-5528.
Ver mais
Lillebø A.I., Cleary D.R.F., Marques B., Reis A., Lopes da Silva T., Calado R. (2012) Ragworm fatty acid profiles reveals habitat and trophic interactions with halophytes and with mercury.
Marine Pollution Bulletin, 64
2528-2534.
Ver mais
Queiroga H., Costa R., Leonardo N., Soares D., Cleary D.F.R. (2011) Morphometric variation in two intertidal littorinid gastropods.
Contributions To Zoology, 80
, (3), 201-211.
Ver mais
Calado R., Pimentel T., Cleary D.F.R., Dionísio G., Nunes C., Lopes da Silva T., Dinis M.T., Reis A. (2010) Providing a common diet to different marine decapods does not standardize the fatty acid profiles of their larvae – a warning sign for experimentation using invertebrate larvae produced in captivity.
Marine Biology, 157
2427-2434.
Ver mais
Gomes N.C.M., Cleary D.F.R., Pinto F.N., Egas C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2010) Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves.
PLOS ONE, 5
, (11), .
Ver mais
Cleary DFR, Genner MJ, Koh LP, Boyle TJB, Setyawati T, de Jong R, Menken SBJ (2009) Butterfly species and traits associated with selectively logged forest in Borneo.
Basic And Applied Ecology, 10
237–245.
Ver mais
Marijnissen S.A.E., Michel E., Cleary D.F.R., McIntyre P.B. (2009) Ecology and conservation status of endemic freshwater crabs in Lake Tanganyika, Africa.
Biodiversity And Conservation, 18
1555-1573.
Ver mais
de Voogd NJ, Becking LE, Cleary DFR (2009) Sponge community composition in the Derawan Islands, NE Kalimantan, Indonesia.
Marine Ecology Progress Series, 396
219-230.
Ver mais
de Voogd N.J., Cleary D.F.R. (2009) Variation in sponge composition among Singapore reefs.
The Raffles Bulletin Of Zoology, supplement 22
59-67.
Ver mais
Cleary DFR, DeVantier L, Giyanto, Vail L, Manto P, de Voogd NJ, Rachello-Dolmen PG, Tuti Y, Budiyanto A, Wolstenholme J, Hoeksema BW, Suharsono (2008) Relating variation in species composition to environmental variables: a multi-taxon study in an Indonesian coral reef complex.
Aquatic Sciences, 70
419-431.
Ver mais
Marijnissen SAE, Michel E, Kamermans M, Olaya-Bosch K, Kars M, Cleary DFR, van Loon EE, Rachello Dolmen PG, Menken SBJ (2008) Exploring ecological correlates of species differences in Lake Tanganyika endemic crabs.
Hydrobiologia, 615
81-94.
Ver mais
Grill A, Cleary DFR, Stettmer C, Bräu M, Settele J (2008) A mowing experiment to evaluate the influence of management on the activity of host ants of Maculinea butterflies.
Journal Of Insect Conservation, 12
617-627.
Ver mais
de Voogd NJ, Cleary DFR (2008) An analysis of sponge diversity and distribution at three taxonomic levels in the Thousand Islands/Jakarta Bay reef complex, West-Java, Indonesia.
Marine Ecology, 29
205–215.
Ver mais
Cleary DFR, de Voogd NJ (2007) Environmental determination of sponge assemblages in the Spermonde Archipelago, Indonesia.
Journal Of The Marine Biological Association Of The UK, 87
1669-1676.
Ver mais
Erpenbeck D, Cleary DFR, Voigt O, Nichols SA, Degnan BM, Hooper JNA, Wörheide G (2007) Analysis of evolutionary, biogeographical and taxonomic patterns of nucleotide composition in demosponge rRNA.
Of The Marine Biological Association Of The UK, 87
1607-1614.
Ver mais
van Soest RWM, Cleary DFR, de Kluijver MJ, Lavaleye MSS, Maier C, van Duyl FC (2007) Sponge diversity and community composition in Irish bathyal coral reefs.
Contributions To Zoology, 76
121-142.
Ver mais
van Loon E, Cleary DFR, Fauvelot C (2007) ARES: software to compare allelic richness between uneven samples.
Molecular Ecology Notes, 7
579-582.
Ver mais
Cleary DFR, Boyle TJB, Setyawati T, Angraeti CD, Menken SBJ (2007) Bird species richness, composition and ecological traits associated with unlogged and logged Bornean hill forest.
Ecological Applications, 17
1184-1197.
Ver mais
Rachello-Dolmen PG, Cleary DFR (2007) Coral species, traits and environmental conditions in Jakarta Bay/Pulau Seribu reef complex.
Estuarine, Coastal And Shelf Science, 73
816-826.
Ver mais
Cleary DFR, Renema W (2007) Relating species traits of foraminifera to environmental parameters in the Spermonde Archipelago, Indonesia.
Marine Ecology Progress Series, 334
73-82.
Ver mais
de Voogd NJ, Cleary DFR (2007) Relating species traits to environmental parameters in Indonesian coral reef sponge assemblages.
Marine And Freshwater Research, 58
240-249.
Ver mais
Cleary DFR, Suharsono, Hoeksema BW (2006) Coral diversity across a disturbance gradient in the Pulau Seribu reef complex off Jakarta, Indonesia.
Biodiversity And Conservation, 15
3653-3674.
Ver mais
Grill A, Schtickzelle N, Cleary DFR, Nève G, Menken SBJ (2006) Ecological differentiation between the Sardinian endemic Maniola nurag and the pan-European M. urtina.
Biological Journal Of The Linnean Society, 89
561-574.
Ver mais
Charrette NA, Cleary DFR, Mooers AØ (2006) Range-restricted, specialist Bornean butterflies are less likely to recover from ENSO-induced disturbance.
Ecology, 87
2330-2337.
Ver mais
Fauvelot C, Cleary DFR, Menken SBJ (2006) Short-term impact of 1997/1998 ENSO-induced disturbance on abundance and genetic variation in a tropical butterfly.
Journal Of Heredity, 97
367-380.
Ver mais
Cleary DFR, Mooers AØ (2006) Burning and logging differentially affect endemic versus widely distributed butterfly species in Borneo.
Diversity And Distributions, 12
409-416.
Ver mais
Fauvelot C, Cleary DFR, Menken SBJ (2006) Impact of disturbance on butterfly population genetics in East Kalimantan, Indonesia.
Molecular Ecology , 15
2069–2081.
Ver mais
Cleary DFR, Genner MJ (2006) Understanding diversity patterns of Bornean butterfly assemblages.
Biodiversity And Conservation, 15
517-538.
Ver mais
Becking LE, Cleary DFR, de Voogd NJ, Renema W, de Beer M, van Soest RWM, Hoeksema BW (2006) Beta diversity of tropical marine assemblages in the Spermonde Archipelago, Indonesia.
Marine Ecology An Evolutionary Perspective, 27
76-88.
Ver mais
de Voogd NJ, Cleary DFR, Hoeksema BW, Noor A, van Soest RWM (2006) Sponge beta diversity in the Spermonde Archipelago, Indonesia.
Marine Ecology Progress Series, 309
131-142.
Ver mais
Cleary DFR, Fauvelot C, Genner, MJ, Menken SBJ, Mooers AØ (2006) Parallel responses of species and genetic diversity to El Niño Southern Oscillation-induced environmental destruction.
Ecology Letters, 9
301-307.
Ver mais
Cleary DFR, Priadjati A, Suryokusumo BK, Menken SBJ (2006) Butterfly, sapling, seedling and tree diversity in a fire-affected Bornean rainforest.
Austral Ecology, 31
46-57.
Ver mais
Cleary DFR, Genner MJ, Boyle TJB, Setyawati T, Angraeti CD, Menken SBJ (2005) Dependence of bird species richness and composition upon local- and large-scale environmental factors in Borneo.
Landscape Ecology, 20
989-1001.
Ver mais
Cleary DFR, Becking LE, de Voogd NJ, Renema W, de Beer M, van Soest RWM, Hoeksema BW (2005) Cross-shelf diversity of sea urchins, sponges, mushroom corals and foraminifera in the Spermonde Archipelago, Indonesia.
Estuarine, Coastal And Shelf Science, 65
557-570.
Ver mais
Cleary DFR, Priadjati A (2005) Vegetation responses to burning in a rain forest in Borneo.
Plant Ecology, 177
145-163.
Ver mais
Grill A, Knoflach B, Cleary DFR, Kati V (2005) Butterfly, spider, and plant communities in different land-use types in Sardinia, Italy.
Biodiversity And Conservation, 14
1281-1300.
Ver mais
Cleary DFR, Boyle TJB, Setyawati T, Menken SBJ (2005) The impact of logging on the abundance, species richness and community composition of butterfly guilds in Borneo.
Journal Of Applied Entomology, 129
52-59.
Ver mais
Cleary DFR (2004) Community composition and species richness of parasitoids infesting Yponomeuta species in the Netherlands.
Contributions To Zoology, 73
255-261.
Ver mais
Cleary DFR, Grill A (2004) Butterfly response to severe ENSO-induced forest fires in Borneo.
Ecological Entomology, 29
666-676.
Ver mais
Genner MJ, Taylor MI, Cleary DFR, Hawkins SJ, Knight ME, Turner GF (2004) Beta diversity of rock-restricted cichlid fishes in Lake Malawi: importance of environmental and spatial factors.
Ecography, 27
601-610.
Ver mais
Cleary DFR, Mooers AØ (2004) Butterfly species richness and community composition in forests affected by ENSO-induced burning and habitat isolation in Borneo.
Journal Of Tropical Ecology, 20
359-367.
Ver mais
Cleary DFR, van Ginkel W (2004) Effects of host species and size on brood size and larval mortality of the parasitoid, Ageniaspis fuscicollis (Dalman) (Hymenoptera, Encyrtidae).
Environmental Entomology, 33
528-534.
Ver mais
Cleary DFR, Genner MJ (2004) Changes in rain forest butterfly diversity following major ENSO-induced fires in Borneo.
Global Ecology And Biogeography , 13
129-140.
Ver mais
Cleary DFR (2004) Assessing the use of butterflies as indicators of logging in Borneo at three taxonomic levels.
Journal Of Economic Entomology , 97
429-435.
Ver mais
Cleary DFR, Mooers AØ, Eichhorn KAO, van Tol J, de Jong R, Menken SBJ (2004) Diversity and community composition of butterflies and odonates in an ENSO-induced fire affected habitat mosaic: a case study from East Kalimantan, Indonesia.
Oikos, 105
426-446.
Ver mais
Hoeksema BW, Cleary DFR (2004) The sudden death of a coral reef.
Science , 303
1293-1293.
Ver mais
Genner MJ, Seehausen O, Cleary DFR, Knight ME, Michel E, Turner GF (2004) How does the taxonomic status of allopatric populations influence species richness within African cichlid fish assemblages?.
Journal Of Biogeography, 31
93-102.
Ver mais
Grill A, Cleary DFR (2003) Diversity patterns in butterfly communities of the Greek nature reserve Dadia.
Biological Conservation, 114
427-436.
Ver mais
Cleary DFR (2003) An examination of scale of assessment, logging and ENSO-induced fires on butterfly diversity in Borneo.
Oecologia , 135
313-321.
Ver mais
Cleary DFR, Descimon H, Menken SBJ (2002) Genetic and ecological differentiation between the butterfly sisterspecies Colias alfacariensis and Colias hyale.
Contributions To Zoology, 71
131-139.
Ver mais
Daniel Cleary
Investigador Principal (Invesigador de carreira))
- Nome de Autor : Cleary DFR
- Researcher ID: D-2582-2012
- ORCID: 0000-0002-6143-3390
- Ciencia ID: EB10-9E4E-5642
- Departamento: Biologia
- Grupo de Investigação: Coastal and Deep-Ocean Ecology & Conservation (CDEC)
- ISI Web of KnowledgeSM search factor: AU=(Cleary DFR)
Interesses de investigação
As CESAM researcher I played a key role in helping to establish LEMAM, which houses a state-of-the art laboratory and an experimental microcosm system, described in the journal Global Change Biology. This was the first in a series of publications in high impact journals where the impact of climate change on sediment microbial communities was assessed.
I have been also involved in a range of other research projects including studies of microbial communities associated with various coral reef organisms and identifying the potential roles and functions of microbial communities in aquaculture systems.
I like generating and analysing large data sets, for example, using next generation sequencing. This has played a key role in maintaining my scientific output.
I have been also involved in a range of other research projects including studies of microbial communities associated with various coral reef organisms and identifying the potential roles and functions of microbial communities in aquaculture systems.
I like generating and analysing large data sets, for example, using next generation sequencing. This has played a key role in maintaining my scientific output.
Graus académicos
Ph.D. in Biology. Institute of Biodiversity and Ecosystem Dynamics – University of Amsterdam (2002).
Masters in Biology. Institute of Biodiversity and Ecosystem Dynamics – University of Amsterdam (1993).
Masters in Biology. Institute of Biodiversity and Ecosystem Dynamics – University of Amsterdam (1993).
Atividades científicas
Principal Researcher at the Centre for Environmental and Marine Studies (CESAM) and Department of Biology (DeBio) of the University of Aveiro, Portugal (2013 - present).
Coordinating Researcher of the Laboratory of Molecular Studies for Marine Environments (LEMAM), University of Aveiro, Portugal (2009 – present).
Assistent researcher, CESAM and University of Aveiro (2008 - 2013)
Postdoctoral researcher, University of Amsterdam (2006 - 2008)
Postdoctoral researcher, Naturalis Biodiversity Center (2003 - 2006)
Postdoctoral researcher, University of Amsterdam (2002 - 2003)
PhD student, University of Amsterdam (1997 - 2002)
Research assistant, University of Amsterdam (1995 - 1996)
Coordinating Researcher of the Laboratory of Molecular Studies for Marine Environments (LEMAM), University of Aveiro, Portugal (2009 – present).
Assistent researcher, CESAM and University of Aveiro (2008 - 2013)
Postdoctoral researcher, University of Amsterdam (2006 - 2008)
Postdoctoral researcher, Naturalis Biodiversity Center (2003 - 2006)
Postdoctoral researcher, University of Amsterdam (2002 - 2003)
PhD student, University of Amsterdam (1997 - 2002)
Research assistant, University of Amsterdam (1995 - 1996)
Outros
Key Recent Publications
Oliveira V., Polónia A.R.M, Cleary D.F.R., Yusheng M.A., de Voogd N.J., Rocha U.N., Gomes N.C.M. (2020) Characterization of putative circular plasmids in sponge‐associated bacterial communities using a selective multiply‐primed rolling circle amplification. Molecular Ecology Resources. (IF 6.28) https://doi.org/10.1111/1755-0998.13248.
Cleary DFR, Polónia ARM, Huang YM, Gomes NCM, de Voogd NJ. 2019. A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs. FEMS Microbiology Ecology 95: fiz169. Doi: 10.1093/femsec/fiz169.
Cleary DFR, Swierts T, Coelho FJRC, Polónia ARM, Huang YM, Ferreira MRS, Putchakarn S, Carvalheiro L, van der Ent E, Ueng JP, Gomes NCM, de Voogd NJ. 2019. The sponge microbiome within the greater coral reef microbial metacommunity. Nature Communications 10: 1644. DOI: 10.1038/s41467-019-09537-8.
Swierts T, Cleary DFR, de Voogd NJ. 2018. Biogeography of prokaryote communities in closely related giant barrel sponges across the Indo-Pacific. FEMS Microbiol Ecol. 94(12): fiy194. DOI: 10.1093/femsec/fiy194.
Cleary DFR, Polónia ARM, de Voogd NJ. 2018. Bacterial communities inhabiting the sponge Biemna fortis, sediment and water in marine lakes and the open sea. Microbial Ecology 76: 610-624. DOI: 10.1007/s00248-018-1156-6.
Cleary DFR, Polónia ARM, de Voogd NJ. 2018. A comparison of Prokaryote community composition in two Cinachyrella morphospecies and water from west Papuan marine lakes. FEMS Microbiology Ecology 94(2): fix175. doi: 10.1093/femsec/fix175.
Oliveira V., Polónia A.R.M, Cleary D.F.R., Yusheng M.A., de Voogd N.J., Rocha U.N., Gomes N.C.M. (2020) Characterization of putative circular plasmids in sponge‐associated bacterial communities using a selective multiply‐primed rolling circle amplification. Molecular Ecology Resources. (IF 6.28) https://doi.org/10.1111/1755-0998.13248.
Cleary DFR, Polónia ARM, Huang YM, Gomes NCM, de Voogd NJ. 2019. A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs. FEMS Microbiology Ecology 95: fiz169. Doi: 10.1093/femsec/fiz169.
Cleary DFR, Swierts T, Coelho FJRC, Polónia ARM, Huang YM, Ferreira MRS, Putchakarn S, Carvalheiro L, van der Ent E, Ueng JP, Gomes NCM, de Voogd NJ. 2019. The sponge microbiome within the greater coral reef microbial metacommunity. Nature Communications 10: 1644. DOI: 10.1038/s41467-019-09537-8.
Swierts T, Cleary DFR, de Voogd NJ. 2018. Biogeography of prokaryote communities in closely related giant barrel sponges across the Indo-Pacific. FEMS Microbiol Ecol. 94(12): fiy194. DOI: 10.1093/femsec/fiy194.
Cleary DFR, Polónia ARM, de Voogd NJ. 2018. Bacterial communities inhabiting the sponge Biemna fortis, sediment and water in marine lakes and the open sea. Microbial Ecology 76: 610-624. DOI: 10.1007/s00248-018-1156-6.
Cleary DFR, Polónia ARM, de Voogd NJ. 2018. A comparison of Prokaryote community composition in two Cinachyrella morphospecies and water from west Papuan marine lakes. FEMS Microbiology Ecology 94(2): fix175. doi: 10.1093/femsec/fix175.
Publicações
Artigos WoS
(120)
Outros artigos
(8)
Livros
(0)
Capítulo de Livro
(3)
Teses
(5)
Comunicações
(19)
Outras Publicações
(1)
Relatórios
(0)
Projetos
BlueComposite - Utilização de materiais compósitos de origem biológica para libertação controlada de moduladores microbianos químicos em sistemas de aquicultura de recirculação (RAS)
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MicroNiche – Estudo do nicho endolítico de microalgas simbióticas de corais em grãos de areia de recifes
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MAXIMUS.PT - Investigação e desenvolvimento para a produção de larvas e juvenis de pregado em maternidade
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4D-REEF-Past, present, and future of coral reefs in the Coral Triangle
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Symbioreactor - Sustainable Production of Bioactive Metabolites from Microbial Symbionts of Marine Sponges and Corals
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STEP - Sistema de Tratamento integrado de Efluentes de Piscicultura
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LTER-RAVE – Monitorização de longo prazo na Ria de Aveiro: rumo a um conhecimento mais fundo dos processos ecológicos, ambientais e económicos
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LAGOONS - Integrated water resources and coastal zone management in European lagoons in the context of climate change
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AQUASAFE - Desenvolvimento de novas tecnologias para antecipar e diagnosticar surtos de doenças na aquicultura
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RASTREMAR - Utilização de ferramentas moleculares na rastreabilidade de produtos alimentares de origem marinha
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LESS CORAL: O impacto da urbanização sobre recifes de coral
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DiverseShores - Teste da associação entre diversidade genética e diversidade da comunidade em costas rochosas Europeias
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DOMINO EFFECT - Degradação de ecossistemas lóticos associados a plantações florestais: uma avaliação de teias alimentares em comunidades de plantações florestais
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Mudança Climática Global e Poluição: uma combinação para o desastre?
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Orientações científicas
Master (Orientador Principal):
Dille Wielakker
(not a CESAM member)
Master (Orientador Principal):
Annemieke Bijlmer
(not a CESAM member)
Master (Orientador Principal):
Andreia Gonçalves Sousa
(not a CESAM member)
Master (Orientador Principal):
Ana Cecília da Cruz Pires
(ex-CESAM member)
Master (Orientador Principal):
Lisa Becking
(not a CESAM member)
Master (Orientador Principal):
Paola Rachello-Dolmen
(not a CESAM member)
Master (Co-orientador):
Pedro Miguel Pinheiro Saraiva
(not a CESAM member)
Master (Co-orientador):
Gomes, Hélder Alexandre Campos
(ex-CESAM member)
PhD (Orientador Principal):
Ana Rita Moura Polónia
(CESAM member)
PhD (Co-orientador):
Marina Ferreira
(CESAM member)
PhD (Co-orientador):
Thomas Swierts
(not a CESAM member)
PhD (Co-orientador):
Lisa Becking
(not a CESAM member)
PhD (Co-orientador):
Diogo Pinho
(ex-CESAM member)
PhD (Co-orientador):
Ana Cecília da Cruz Pires
(ex-CESAM member)
PhD (Co-orientador):
Esther van der Ent
(not a CESAM member)
Post-doc (Co-orientador):
Francisco José Riso da Costa Coelho
(ex-CESAM member)
Arbitragem em Revistas Científicas Internacionais
• Acta Oecologica
• Biodiversity and Conservation
• Contributions to Zoology
• Conservation Biology
• Diversity and Distributions
• Ecography
• Ecological Entomology
• Ecology
• Entomological Science
• Estuarine, Coastal and Shelf Science
• FEMS Microbiology Ecology
• Journal of Applied Ecology
• Journal of Biogeography
• Journal of Tropical Ecology
• Journal of Tropical Forest Science
• Landscape Ecology
• Marine Ecology Progress Series
• Molecular Ecology
• Nature
• Oikos
• Western North American Naturalist
Short history
Principal researcher of Marine and Estuarine Ecology. I studied biology at the University of Amsterdam. During my study I spent half a year in the Caribbean where I studied aggressive interactions among coral species. After this I spent a year in France at the Université de Provence. For my PhD (also in Amsterdam), I spent two and a half years in the jungles of Borneo, mainly studying butterflies but I was also interested in many other organisms in the rainforest and how disturbances such as logging and forest fires affected them. After my PhD, I did postdocs in Amsterdam and Leiden. Author of more than 100 papers in leading international journals in the areas of Ecology, Tropical Biology and Marine Biology. Principal Researcher or team member of national and international research projects on terrestrial and marine ecology. Research advisor of several Msc students, PhD students and Postdocs. Has refereed several leading journals in the fields of ecology, conservation biology, zoology and marine biology. My major interests include corals, sponges, butterflies, odonates, microbial ecology, biostatistics (particularly using R) and relating community structure to spatial, environmental and temporal processes.
Financiamento do CESAM: UIDP/50017/2020 + UIDB/50017/2020 + LA/P/0094/2020
CESAM © 2023 | Todos os direitos reservados.
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