Oliveira V., Polónia A.R.M., Cleary D.F.R., Huang Y.u.s.h.e.n.g. .M., de Voogd N.J., Keller-Costa T., Costa R., Gomes N.C.M. (2022) Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts.
Microbiological Research, 265
.
Ver mais
Cleary, D.F.R., Polónia, A.R.M., Swierts, T., Coelho, F.J.R.C., de Voogd, N.J., Gomes, N.C.M. (2022) Spatial and environmental variables structure sponge symbiont communities.
Molecular Ecology, 31
, (19), 4932-4948.
Ver mais
Ferreira M.R., Cleary D.F.R., Bat N.K., Polónia A.R., Gomes, N.C.M. (2022) Assessing the core microbial symbionts of jellyfish in Indonesian and Vietnamese marine lakes.
Journal Of The Marine Biological Association Of The United Kingdom,
486-494.
Ver mais
Oliveira V., Polonia A.R.M., Cleary D.F.R., Huang Y.S.M., de Voogd N.J., da Rocha U.N., Gomes N.C.M. (2021) Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification.
MOLECULAR ECOLOGY RESOURCES, 21
, (1), 110-121.
Ver mais
Cleary D.F.R., Polonia A.R.M., Huang Y.M., Swierts T. (2020) Compositional variation between high and low prokaryotic diversity coral reef biotopes translates to different predicted metagenomic gene content.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,
.
Ver mais
Ferreira M.R.S., Cleary D.F.R., Coelho F.J.R.C., Gomes N.C.M., Huang Y.M., Polonia A.R.M., de Voogd N.J. (2020) Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor.
ANNALS OF MICROBIOLOGY, 70
, (1), .
Ver mais
Polonia A.R.M., Cleary D.F.R., Gauvin-Bialecki A., de Voogd N.J. (2020) Archaeal communities of low and high microbial abundance sponges inhabiting the remote western Indian Ocean island of Mayotte.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,
.
Ver mais
Daniel F.R.C., Ana R.M.P. (2020) Marine lake populations of jellyfish, mussels and sponges host compositionally distinct prokaryotic communities.
HYDROBIOLOGIA, 847
, (16), 3409-3425.
Ver mais
Pires, ACC, Oliveira, V, Cleary, DFR, Polónia AR, Coelho, FJRC, Waheed, Z, de Voogd, NJ, Gomes, NCM (2020) Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia.
Marine Biology Research, 16
729-743.
Ver mais
Cleary D.F.R., Ferreira M.R.S., Bat N.K., Polonia A.R.M., Gomes N.C.M., de Voogd N.J. (2020) Bacterial composition of sponges, sediment and seawater in enclosed and open marine lakes in Ha Long Bay Vietnam.
MARINE BIOLOGY RESEARCH, 16
, (1), 18-31.
Ver mais
Polonia A.R.M., Cleary D.F.R., Duine A.A., Van Dijk J., De Voogd N.J. (2019) Assessment of fish community structure along the Jakarta Bay-Pulau Seribu reef complex.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, 99
, (2), 503-516.
Ver mais
Cleary D.F.R., Swierts T., Coelho F.J.R.C., Polonia A.R.M., Huang Y.S.M., Ferreira M.R.S., Putchakarn S., Carvalheiro L., van der Ent E., Ueng J.P., Gomes N.C.M., de Voogd N.J. (2019) The sponge microbiome within the greater coral reef microbial metacommunity.
NATURE COMMUNICATIONS, 10
.
Ver mais
Pires A.C.C., Cleary D.F.R., Polonia A.R.M., Lim S.C., De Voogd N.J., Oliveira V., Gomes N.C.M. (2019) Comparison of bacterial communities associated with Xestospongia testudinaria, sediment and seawater in a Singaporean coral reef ecosystem.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, 99
, (2), 331-342.
Ver mais
Cleary D.F.R., Polonia A.R.M., Huang Y.M., Putchakarn S., Gomes N.C.M., de Voogd N.J. (2019) A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs.
FEMS MICROBIOLOGY ECOLOGY, 95
, (12), .
Ver mais
Polonia A.R.M., Cleary D.F.R. (2019) Archaeal communities in sponge, sediment and water from marine lakes and open water habitats.
MARINE BIOLOGY RESEARCH, 15
, (3), 259-274.
Ver mais
Coelho F.J.R.C., Cleary D.F.R., Gomes N.C.M., Polonia A.R.M., Huang Y.M., Liu L.L., de Voogd N.J. (2018) Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.
MICROBIAL ECOLOGY, 75
, (1), 239-254.
Ver mais
Cleary D.F.R., Polonia A.R.M. (2018) Bacterial and archaeal communities inhabiting mussels, sediment and water in Indonesian anchialine lakes.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 111
, (2), 237-257.
Ver mais
Cleary D.F.R., Polonia A.R.M., de Voogd N.J. (2018) Prokaryote composition and predicted metagenomic content of two Cinachyrella Morphospecies and water from West Papuan Marine Lakes.
FEMS MICROBIOLOGY ECOLOGY, 94
, (2), .
Ver mais
Cleary D.F.R., Polonia A.R.M., de Voogd N.J. (2018) Bacterial Communities Inhabiting the Sponge Biemna fortis, Sediment and Water in Marine Lakes and the Open Sea.
MICROBIAL ECOLOGY, 76
, (3), 610-624.
Ver mais
Cleary D.F.R., Polonia A.R.M., Becking L.E., de Voogd N.J., Purwanto ., Gomes H., Gomes N.C.M. (2018) Compositional analysis of bacterial communities in seawater, sediment and high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIODIVERSITY, 48
, (4), 1889-1901.
Ver mais
de Voogd N.J., Gauvin-Bialecki A., Polonia A.R.M., Cleary D.F.R. (2018) Assessing the bacterial communities of sponges inhabiting the remote western Indian Ocean island of Mayotte.
MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE, 39
, (6), .
Ver mais
Luciana Albuquerque ., Ana Rita Polónia ., Cristina Barroso ., Hugo J. C. Froufe ., Olga Lage ., Alexandre Lobo-da Cunha ., Conceição Egas ., Milton S. da Costa . (2018) Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov.
International Journal Of Systematic And Evolutionary Microbiology,
.
Ver mais
Polonia A.R.M., Cleary D.F.R., Coelho F.J.R.D., Becking L.E., de Voogd N.J., Toha A.H.A., Gomes N.C.M. (2018) Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIOLOGY RESEARCH, 14
, (6), 537-550.
Ver mais
Cleary D.F.R., Coelho F.J.R.C., Oliveira V., Gomes N.C.M., Polonia A.R.M. (2017) Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment.
Marine Ecology, 38
, (2), -e12411.
Ver mais
Polonia A.R.M., Cleary D.F.R., Freitas R., Gomes N.C.M., de Voogd N.J. (2017) Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment.
JOURNAL OF SEA RESEARCH, 119
37-53.
Ver mais
Polonia A.R.M., Cleary D.F.R., Freitas R., Coelho F.J.R.C., de Voogd N.J., Gomes N.C.M. (2016) Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment.
MARINE GENOMICS, 29
69-80.
Ver mais
Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2016) Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes.
FEMS MICROBIOLOGY ECOLOGY, 92
, (5), .
Ver mais
Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution.
MOLECULAR ECOLOGY, 25
, (18), 4645-4659.
Ver mais
Cleary D.F.R., Polonia A.R.M., Sousa A.I., Lillebo A.I., Queiroga H., Gomes N.C.M. (2016) Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima.
PLANT BIOLOGY, 18
, (5), 824-834.
Ver mais
Cleary D.F.R., Polonia A.R.M., Renema W., Hoeksema B.W., Rachello-Dolmen P.G., Moolenbeek R.G., Budiyanto A., Yahmantoro ., Tuti Y., Giyanto ., Draisma S.G.A., van Reine W.F.P., Hariyanto R., Gittenberger A., Rikoh M.S., de Voogd N.J. (2016) Variation in the composition of corals, fishes, sponges, echinoderms, ascidians, molluscs, foraminifera and macroalgae across a pronounced in-to-offshore environmental gradient in the Jakarta Bay-Thousand Islands coral reef complex.
MARINE POLLUTION BULLETIN, 110
, (2), 701-717.
Ver mais
Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2015) Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 107
, (3), 821-834.
Ver mais
de Voogd N.J., Cleary D.F.R., Polonia A.R.M., Gomes N.C.M. (2015) Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.
FEMS MICROBIOLOGY ECOLOGY, 91
, (4), .
Ver mais
Pegoraro N., Calado R., Duarte L.N., Manco S.C., Fernandes F.J., Polonia A.R.M., Cleary D.E.R., Gomes N.C.M. (2015) Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production.
JOURNAL OF FOOD PROTECTION, 78
, (5), 983-989.
Ver mais
Polonia A.R.M., Cleary D.F.R., Freitas R., de Voogd N.J., Gomes N.C.M. (2015) The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment.
MOLECULAR ECOLOGY, 24
, (2), 409-423.
Ver mais
Cleary D.F.R., de Voogd N.J., Polonia A.R.M., Freitas R., Gomes N.C.M. (2015) Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.
MICROBIAL ECOLOGY, 70
, (4), 889-903.
Ver mais
Polonia A.R.M., Cleary D.F.R., de Voogd N.J., Renema W., Hoeksema B.W., Martins A., Gomes N.C.M. (2015) Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago.
SCIENCE OF THE TOTAL ENVIRONMENT, 537
139-151.
Ver mais
Polonia A.R.M., Cleary D.F.R., Duarte L.N., de Voogd N.J., Gomes N.C.M. (2014) Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia.
Microbial Ecology, 67
, (3), 553-567. 1432-184X.
Ver mais
Cleary D.F.R., Polonia A.R.M., Renema W., Hoeksema B.W., Wolstenholme J., Tuti Y., de Voogd N.J. (2014) Coral reefs next to a major conurbation: a study of temporal change (1985-2011) in coral cover and composition in the reefs of Jakarta, Indonesia.
Marine Ecology Progress Series, 501
89-98.
Ver mais
Cleary D.F.R., Becking L.E., de Voogd N.J., Pires A.C.C., Polónia A.R.M., Egas C., Gomes N.C.M. (2013) Habitat and host related variation in sponge bacterial symbiont communities in Indonesian waters.
FEMS Microbiology Ecology, 85
, (3), 465–482.
Ver mais
Polonia A.R., Figueiredo M., Cleary D.F.R., de Voogd N.J., Martins A. (2011) Sea surface temperature and ocean colour (MODIS/AQUA) space and time variability in Indonesian Sea coral reef systems from 2002 to 2011.
REMOTE SENSING OF THE OCEAN, SEA ICE, COASTAL WATERS, AND LARGE WATER REGIONS 2011, 8175
. 978-0-81948-802-2.
Ver mais
Oliveira V., Polónia A.R.M, Cleary D.F.R., Yusheng M.A., de Voogd N.J., Rocha U.N., Gomes N.C.M. (2019) Amplification of Plasmid DNA from sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification. 15th Symposium on Bacterial Genetics and Ecology, 26–30 May 2019, Lisbon, Portugal.
Ver mais
Polónia, A. R. M., Vanessa Oliveira, Rodolfo B. Toscan, João P. Saraiva, Ulisses N. da Rocha, Nicole J. de Voogd, Yusheng M. Huang, Daniel F.R. Cleary, Newton C.M. Gomes (2019) Metagenomic analysis of the sponge Cinachyrella sp., seawater and sediment of a Taiwanese coral reef ecosystem. Microbiotec’19, 5 to 7 December, 2019, Coimbra.
Ver mais
Vanessa Oliveira, Polónia, A. R. M., Daniel R.F. Cleary, Yusheng M. Huang, Nicole J. de Voogd, Ulisses N. da Rocha, Newton C.M. Gomes (2019) Plasmid diversity of bacterial communities associated with the marine sponge Cinachyrella sp. Microbiotec’19 , 5 to 7 December, 2019, Coimbra.
Ver mais
Oliveira V., Pires A.C.C., Cleary D.F.R., Pólonia A.R.M., Lim S.C., de Voogd N.J., Gomes N.C.M. (2017) Bacterial communities of Xestospongia testudinaria, sediment and water in a singaporean coral reef ecosystem. BAGECO 2017- 14th Symposium on Bacterial Genetics and Ecology., June 4-8, Aberdeen, Scotland.
Ver mais
Sousa A.I., Polónia A.R., Calado R., Serôdio J., Cleary D.F.R., Lillebø A.I. (2014) Zostera noltii functioning and dynamics along a salinity gradient: Ria de Aveiro (Portugal). Seagrasses in Europe: Threats, Responses and Management, 4-6 March, 2014, Olhão, Faro, Portugal.
Ver mais
Sousa A.I., Polónia A.R., Calado R., Serôdio J., Cleary D.F.R., Lillebø A.I. (2013) Zostera noltii dynamics along a salinity gradient: Ria de Aveiro (Portugal). 8th International SedNet conference, 6-9 November, Lisbon, Portugal.
Ver mais
Polónia ARM, Cleary DRF, Duarte LN, de Voogd NJ, Gomes NCM Composition of Archaea in seawater, sediment and sponges in the Kepulauan Seribu reef system, Indonesia. First EMBO Conference on Aquatic Microbial Ecology: SAME13, , Stresa, Italy.
Ver mais
Polónia ARM, Figueiredo M, Cleary DFR, de Voogd NJ, Martins A. Sea surface temperature and ocean colour (MODIS/AQUA) space and time variability in Indonesian Sea coral reef systems from 2002 to 2011. Remote Sensing of the Ocean, Sea Ice, Coastal Waters, and Large Water Regions 2011 , , Prague, Czech Republic.
Ver mais
ARM Polónia, DFR Cleary, LN Duarte, NJ de Voogd, NCM Gomes Composition and diversity of Archaea in seawater, sediment and sponges in the Kepulauan Seribu reef system, Java, Indonesia. Ninth World Sponge Conference 2013, , Fremantle, Western Australia.
Ver mais
Nicole de Voogd, Daniel FR Cleary, Ana RM Polónia, Newton CM Gomes Community structure of Archaea and Bacteria in two Indonesian sponges. Ninth World Sponge Conference 2013, Fremantle, Western Australia, .
Ver mais
Rossana M. Freitas, Daniel F.R. Cleary, Ana R.M. Polónia, Leontine E. Becking, Newton C.M. Gomes Diversity of bacterial community in mussels from Indonesian marine lakes. First EMBO Conference on Aquatic Microbial Ecology: SAME13, , Stresa, Italy.
Ver mais
Nicole J de Voogd, Daniel FR Cleary, Ana RM Polónia, Anne Bialecki, Newton CM Gomes The Microbial Communities Inhabiting Sponges of the Remote Western Indian Ocean Island of Mayotte. 2nd International Symposium on Sponge Microbiology, October 26-29, 2014, Baltimore, Maryland, USA.
Ver mais