HOME  »  Members  »  Integrated  »  Faculty
 
  Angela Cunha  
  Phone: + 351 234 370 784  
  e-mail: acunha@ua.pt  
  Category: Assistant Professor  
  Department: Department of Biology  
  Research group: Marine and Estuarine Ecology
 
ISI Web of KnowledgeSM search factor: ResearcherID=E-9537-2011  
  Direct URL for this page: http://www.cesam.ua.pt/angela_cunha  
     
Academic degrees
Diploma in Biology, University of Aveiro (1988)
Diploma of Pedagogic Competence and Scientific Capacity (Equivalent to MSc. Diploma), University of Aveiro (1994)
PhD in Biology, University of Aveiro (2001)
Professional Career

Undergraduate Teaching Assistant – Department of Biology, University of Aveiro (1987-1988).


Teaching Assistant (Junior) - Department of Biology, University of Aveiro (1989-1994).


 Teaching Assistant (Senior) - Department of Biology, University of Aveiro (1994-2001).


 Assistant Professor – Department of Biology, University of Aveiro (2001-).

Research interests

Environmental microbiology: ecology of bacterial communities in aquatic environments, with special interest in marine water and sediments.


Plant-bacteria interactions in the rhizosphere and endosphere of salt marsh halophytes.


Microbial processes of production, processing and mineralization of organic matter. Bacterial communities in sediments: methane formation and sulfate reduction.


Interactions between microorganisms and hydrocarbons bioremediation and bioprospecting. Bacterial biodegradation of pollutants and microbe enhanced phytorremediation.


Interactions light-organisms and photodynamic inactivation of microorganisms and microbial biofilms.

Present research activities

Light-bacteria interactions:  photodynamic inactivation of bacteria, fungi and microbial biofilms.
Biosurfactants application for the control of microbial biofilms.
Microbial consortia of hydrocarbons degraders and biosurfactants producers.
Bioremediation of organic pluentes.
Bacterial communities of deep ocean sediments.
Appication of plant-growth promoting rhizobacteria in the mitigation of stress of crop-cultivated halophytes.

Awards

IMAR – Luiz Saldanha Award' 2002 granted to the research article “Cunha, M. A., Almeida, M. A. and Alcântara, F. (2001). Short-time responses of the natural planktonic bacterial community to the changing water properties in an estuarine environment: ectoenzymatic activity, glucose incorporation and biomass production. Microbial Ecology 42(1):69-79”


Prémio Clube Usuários SPME 2011 - Prémio para o melhor trabalho em SPME (2ª Edição) para o trabalho Salvador, A., Baptista, I., Barrosa, A.S., Gomes, N, Cunha, A., Almeida, A., Rocha S. M. (2011) Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level of cereal grains and coffee beans?  


2011 | Rocha, S. M., Costa, V.; Ferreira, J.; Almeida, A.; Cunha, A.; Gomes, N.; Stein, P.; Petronilho, S.; Baptista, I. "Equipamento e processo de extracção por fluxo de contaminantes biológicos e químicos". Patente de invenção nacional n.º 105390, Data do pedido provisório: 22-11-2010. Data do pedido de conversão em pedido dedifinitivo: 18-11-2011.


2010 | Rocha, S. M.; Costa, V.; Ferreira, J.; Almeida, A.; Cunha, A.; Gomes, N.; Stein, P.; Petronilho, S.; Baptista, I. "Equipment and flow extraction process of biological and chemical contaminants". International Patent: PCT (PT-PPI 42961-10), Data do pedido provisório: 10-12-2010.


2007 | Carvalho, B.M.B., Costa, L., Alves, E., Almeida, M.A.P., Cunha, M.A.S.D.A., Cunha, Tomé, J.P.C., Faustino, M.A.F., Neves, M.G.P.M.S., Tome, A.C., Cavaleiro, J.A.S., Lin, Z., Rainho, J.P. Materiais híbridos nanomagnete-porfirina, processo para a síntese e respectiva aplicação em desinfecção de águas. Patente de invenção nacional n.º 103828, 21-09-2007.

Publications in peer reviewed international scientific journals

2017 | Castro, K., Moura, N., Fernandes, A., Faustino, M.A., Simões, M., Cavaleiro, J., Nakagaki, S., Almeida, A., Cunha, A., Silvestre, A., Freire, C., Pinto, R. Control of Listeria innocua biofilms by biocompatible photodynamic antifouling chitosan based materials. Dyes Pigments 137: 265-276.


2017 | Fernández, L., Louvado, A., Esteves, V.I., Gomes, N.C.M., Almeida, A., Cunha, A. Biodegradation of 17β-estradiol by bacteria isolated from deep sea sediments in aerobic and anaerobic media. Journal of Hazardous Materials 323, Part A: 359-366.


2016 | Alves, C., Duarte, M., Ferreira, M., Alves, A., Almeida, A., Cunha, A. Air quality in a school with dampness and mould problems. Air Quality, Atmosphere and Health, 9(2):107-115.


2016 | Alves, E., Moreirinha, C., Faustino, M.A.F., Cunha, A., Delgadillo, I., Neves, M.G.P.M.S., Almeida, A. Overall biochemical changes in bacteria photosensitized with cationic porphyrins monitored by infrared spectroscopy. Future Medicinal Chemistry, 8(6):613-628.


2016 | Bartolomeu, M., Rocha, S., Cunha, A., Neves, M.G.P.M.S., Faustino, M.A.F., Almeida, A. Effect of photodynamic therapy on the virulence factors of Staphylococcus aureus. Frontiers in Microbiology, 7:267.


2016 | Bartolomeu, M., Coimbra, S., Cunha, Â., Neves, M.G.P.M.S., Cavaleiro, J.A.S., Faustino, M.A.F., Almeida, A. Indirect and direct damage to genomic DNA induced by 5,10,15-tris(1-methylpyridinium-4-yl)-20-(pentafluorophenyl)porphyrin upon photodynamic action. Journal of Porphyrins and Phthalocyanines, 20: 331–336.


2016 | Baptista I., Rocha, S.M., Cunha, Â., Saraiva, J.A., Almeida, A. Inactivation of Staphylococcus aureus by high pressure processing: An overview. Innovative Food Science & Emerging Technologies, 36:128-149.


2016 | Coelho, F.J.R.C., Louvado, A., Domingues, P.M., Cleary, D., Ferreira, M., Almeida, A., Cunha, M.R., Cunha, A., Gomes, N.C.M. Integrated analysis of bacterial and microeukaryotic communities in mud volcanoes with differential activity in the Gulf of Cadiz. Scientific Reports, 6:35272.


2016 | Fernández, L., Esteves, V.I., Cunha, A., Schneider, R.J., Tomé, J.P.C. Photodegradation of organic pollutants in water by immobilized porphyrins and phthalocyanines. Journal of Porphyrins and Phthalocyanines, 20: 150–166.


2016 | Ferreira, M., Pereira, S., Almeida, A., Queirós, R., Delgadillo, I., Saraiva, J., Cunha, A. Effect of temperature and compression/decompression rates on high pressure inactivation of Listeria. Acta Alimentaria 45(1): 61-68.


2016 | Ferreira, M., Almeida, A., Delgadillo, I., Saraiva, J., Cunha, A. Susceptibility of Listeria monocytogenes to high pressure processing: a review. Food Reviews International, 4:377–399.


2016 | Gomes, M.C., Cunha, A., Trindade, T., Tomé, J.P.C. The Role of Surface Functionalization of Silica Nanoparticles for Bioimaging Journal of Innovative Optical Health Sciences, 9(4):1630005 (16 pages).


2016 | Santos, L., Pinto, A., Filipe, O.M.S., Cunha, A., Santos, E.B.H., Almeida, A. Insights on the optical properties of estuarine DOM - hydrological and biological influences. PLoS ONE 11(5):e0154519.


2016 | Silva, Y. J., Moreirinha, C., Pereira, C., Costa, L., Rocha, R. J. M., Cunha, Â., Gomes, N.C.M., Calado, R., Almeida A. Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole (Solea senegalensis) with Phage AS-A. Aquaculture, 450: 225-233.


2016 | Simões, C., Gomes, M. C., Neves, M. G. P. M. S., Cunha, Â., Tomé, J. P. C., Tomé, A. C., Cavaleiro, J. A. S., Almeida A., Faustino M. A. F. Photodynamic inactivation of Escherichia coli with cationic meso-tetraarylporphyrins – The charge number and charge distribution effects. Catalysis Today 266:197-204.


2015 | Alves, E., Esteves, A.C., Correia, A., Cunha, A., Faustino, M.A.F., Neves, M.G.P.M.S., Almeida, A. Protein profiles of Escherichia coli and Staphylococcus warneri are altered by photosensitization with cationic porphyrins. Photochemical & Photobiological Sciences, 14, 1169 - 1178.


2015 | Alves, E., Faustino, M.A.F., Neves, M.G.P.M.S., Cunha, A., Nadais, H., Almeida, A. Potential applications of porphyrins in photodynamic inactivation beyond the medical scope. Journal of Photochemistry and Photobiology C: Photochemistry Reviews 22:34–57.


2015 | Baptista, I., Queirós, R., Cunha, A., Saraiva, J., Rocha, S.M., Almeida, A. Inactivation of enterotoxic and non-enterotoxic Staphylococcus aureus strains by high pressure treatments and evaluation of its impact on virulence factors. Food Control 57: 252-257.


2015 | Baptista I., Queirós R.P., Cunha A., Rocha S.M., Saraiva J.A., Almeida A. (2015) Evaluation of resistance development and viability recovery by toxigenic and non-toxigenic Staphylococcus aureus strains after repeated cycles of high hydrostatic pressure. Food Microbiology. 46, 515-520.


2015 | Coelho, F.J.C.R., Cleary, D.F.R., Rocha, R.J.M., Calado, R., Castanheira, J., Silva, A.M.S., Simões, M.M.Q., Oliveira, V., Lillebo, A., Almeida, A., Cunha, A., Lopes, I., Ribeiro, R., Moreira-Santos, M., Marques, C.R., Costa, R., Pereira, R., Gomes, N.C.M. Unraveling the interactive effects of climate change and oil contamination on lab-simulated estuarine benthic communities. Global Change Biology, 21:1871-1886.


2015 | Lopes, D., Melo, T., Alves, E., Gomes, M.C., Cunha, A., Faustino, M.A.F., Neves, M.G.P.M.S., Domingues, M.R.M., Almeida, A. Evaluation of the interplay among the charge of porphyrinic photosensitizers, lipid oxidation and photoinactivation efficiency in Escherichia coli. Journal of Photochemistry and Photobiology B: Biology, 141:145–153.


2015 | Lourenço, L.M.O., Sousa, A., Gomes, M.C., Faustino, M.A.F., Almeida, A., Neves, M.G.P.M.S., Cavaleiro, J.A.S., Cunha, A., Tomé, J.P.C. Inverted methoxypyridinium phthalocyanines for PDI of pathogenic bacteria. Photochemical & Photobiological Sciences, 14:853–1863.


2015 | Louvado, A., Gomes, N.C.M., Simões, M.M.Q., Almeida, A., Cunha, A. Polycyclic aromatic hydrocarbons in deep sea sediments: microbe-pollutant interactions in a remote environment. Science of the Total Environment, 526:312-328.


2015 | Maia, F., Silva, A.P., Fernandes, S., Cunha, A., Almeida, A., Tedim, J., Zheludkevich, M.L.,. Ferreira, M.G.S. Incorporation of biocides in nanocapsules for protective coatings used in maritime applications. Chemical Engineering Journal, 270: 150-157.


2015 | Martins, C., Correia, V.G., Aguiar-Ricardo, A., Cunha, A., Moutinho, M.G.M., Functionalized oxazoline based oligomers as broad spectrum antimicrobial agents for oral applications. SpringerPlus, 4(1):1-5.


2015 | Matos, M. R. A., Gomes, M. T. S. R., Oliveira, J. A. B. P., Alves, E., Cunha, M. A. S. D. A., Almeida, A., Rudnitskaya, A. Assessment of transition metals toxicity in environmental matrices using potentiometric electrodes: inorganic mercury(ii) in the seawater as a case study. Electroanalysis, 27(8):1932-1938.


2015 | Pereira, C., Santos, L., Silva, Y.J., Cunha, A., Romalde, J., Nunes, M.L., Almeida, A. Seasonal variation of bacterial communities in shellfish harvesting waters: Preliminary study before applying phage therapy. Marine Pollution Bulletin 90(1–2):68–77.


2015 | Oliveira, V., Gomes, N.C., Almeida, A., Silva, A.M., Silva, H., Cunha, Â. (2014) Microbe-assisted phytoremediation of hydrocarbons in estuarine environments. Microbial Ecology, 69(1):1-12.


2015 | Rocha, D.M., Venkatramaiah, N., Gomes, M.C., Almeida, A., Faustino, M.A., Paz, F.A., Cunha, Â., Tomé, J.P. "Photodynamic inactivatio F.n of Escherichia coli with cationic ammonium Zn (ii) phthalocyanines." Photochemical & Photobiological Sciences 14(10): 1872-1879.


2015 | Silva, Y.J., Manco, S., Costa, R., Rodrigues, V., Dias, J., Ferreira, H., Pousão-Ferreira, P., Almeida, A., Cunha, A., Calado, R., Gomes, N.C.M. Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758). Aquaculture Research, 46(7):1760-1769.


2015 | Sousa, I., Maia, F., Silva, A., Cunha, A., Almeida, A., Evtyugin, D.V., Tedim, J., Ferreira, M.G. A novel approach for immobilization of polyhexamethylene biguanide within silica capsules. RSC Advances, 5(112):92656-92663.


2014 | Almeida, J., Tomé, J.P.C., Neves, M.G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Cunha, Â., Costa, L., Faustino, M.A.F. Almeida, A. Photodynamic inactivation of multidrug-resistant bacteria in hospital wastewaters: influence of residual antibiotics. Photochemical & Photobiological Sciences, 13, 626-633.


2014 | Alves, E., Fustino, M.A.F., Neves, M.G.P.M.S., Cunha, A., Tomé, J., Almeida, A. An insight on bacterial cellular targets of photodynamic inactivation. Future Medical Chemistry (2014) 6(2), 141–164.


2014 | Alves, E., Rodrigues, J., Faustino, M.A.F., Nevs, M.G.P.M.S., Cavaleiro, J.A.S., Lin, Z., Cunha, A., Nadais, M. H., Tomé, J., Almeida, A. A new insight on nanomagnetic-porphyrin hybrids for photodynamic inactivation of microorganisms. Dyes & Pigments, 110:80-88.


2014 | Baptista, I., Santos, A.L., Pereira, C. Cunha, A., Gomes, N.C.M.,  Almeida, A. Influence of incubation conditions on bacterial production estimates in an estuarine system. Aquatic Ecology, 48(3): 327-336.


2014 | Beirão, S., Fernandes, S., Coelho, J., Faustino, M.A.F. Tomé, J.P.C, Neves, M.G.P.M.S., Tomé, A., Almeida, A., Cunha, A. Photodynamic inactivation of bacterial and yeast biofilms with a cationic porphyrin. Photochemistry & Photobiology, 90(6):1387–1396.


2014 | Gomes, N.C.M., Cleary, D.F.R., Manco, S., Ladeiro, B.C.F., Almeida, A., Cunha, A., Mendonça-Hagler, L.C.S., Smalla, K., Assessing variation in bacterial composition between the rhizospheres of two mangrove tree species. Estuarine, Coastal and Shelf Science 139(0): 40-45.


2014 | Mendes, C., Cunha, A., Gomes, N., Almeida, A. Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy. Annals of Microbiology, 64(2): 773-778.


2014 | Mesquita, M.Q., Menezes, J.C., Pires, S.M., Neves, M.G.P.M.S., Simões, M.M., Tomé, A.C., Cavaleiro, J.A., Cunha, A., Almeida, A Daniel-da-Silva, A.L., Faustino, M.A.F. Pyrrolidine-fused chlorin photosensitizer immobilized on solid supports for the photoinactivation of Gram negative bacteria. Dyes and Pigments, 110: 123–133.


2014 | Mesquita, M.Q., Menezes, J.C.J.M.D.S., Neves, M.G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Cunha, Â., Almeida, A., Hackbarth, S. Röder, B., Faustino M.A.F. Photodynamic inactivation of bioluminescent Escherichia coli by neutral and cationic pyrrolidine-fused chlorins and isobacteriochlorins. Bioorganic & Medicinal Chemistry Letters, 24(3): 808-812.


2014 | Oliveira, V., Gomes, N.C.M., Cleary, D.F.R., Almeida, A., Silva, A.M.S., Simões, M.M.Q., Silva, H., Cunha, A. Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons. FEMS Microbiology Ecology, 90(3):647–662.


2014 | Oliveira, V., Gomes, N. C. M., Almeida, A. Silva, H.M.S., Simões, M.M.Q., Smalla, K., Cunha, Â. Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria. Molecular Ecology 23, 1392-1404.


2014 | Pereira M., Faustino M., Tomé J., Neves G. , Tomé A., Cavaleiro J., Cunha A, Almeida A. Influence of external bacterial structures in the efficiency of photodynamic inactivation by a cationic porphyrin. Photochemical & photobiological Sciences 13, 680-690.


2014 | Santos, A.L., Baptista, I., Gomes, N.C.M., Henriques, I., Almeida, A., Correia, A., Cunha, A. Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation. FEMS Microbiology Ecology, 87(2): 517-535.


2014 | Santos, L.M.P., Santos, A.L., Coelho, F.J.C.R., Gomes, N.C.M., Dias, J.M., Cunha, A., Almeida, A. Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro). Journal of Plankton Research 36: 230-242.


2014 | Santos, L.M.P., Vaz, L., Gomes, N.C.M., Vaz, N., Dias, J.M., Cunha, A., Almeida, A. Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro Estuarine. Estuarine Coastal and Shelf Science,138(0): 107-120.


2014 | Silva, Y. J., L. Costa, C. Pereira, Â. Cunha, R. Calado, N. C. M. Gomes and A. Almeida. Influence of environmental variables in the efficiency of phage therapy in aquaculture. Microbial Biotechnology, 7: 401–413.


2014 | Silva, Y., Costa, L., Pereira, C., Mateus, C., Cunha, A., Calado, R., Gomes, N.C.M., Pardo, M., Hernandez, I., Almeida, A. Phage therapy as an approach to prevent Vibrio anguillarum infections in fish larvae production. PLoS ONE 9(12):e114197.


2013 | Alves, E., Melo, T., Simões, C., Faustino, M.A., Tomé, .JP., Neves, M.G., Cavaleiro, J.A., Cunha, Â., Gomes, N., Domingues, P. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics. Rapid Communications in Mass Spectrometry 27:1607-1618.


2013 | Alves, E., Faustino, M.A.F., Tomé, J.P.C., Neves, M.G.P.M.S.,  Tomé, A.C., Cavaleiro, J.A.S., Cunha, A., Gomes, N.C.M., Almeida, A. Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins. Bioorganic & Medicinal Chemistry, 21(17):4311-4318.


2013 | Coelho, F.J.R.C., Rocha, R.J.M., Pires, A.C.C., Ladeiro, B., Castanheira, J. M., Costa, R., Almeida, A., Cunha, A., Lillebø, A.I., Ribeiro, R., Pereira, R., Lopes, I., Marques, C., Moreira-Santos, M., Calado, R., Cleary, D.F.R., Gomes, N.C.M. Development and validation of an experimental life support system for assessing the effects of global climate change on coastal and estuarine marine benthic communities. Global Change Biology 19:2584–2595.


2013 | Coelho, F., Santos, A., Coimbra, J., Almeida, A., Cunha, Â., Cleary, D., C. Ricardo; Gomes, N. Interactive effects of global climate change and pollution on marine microbes: the way ahead. Ecology and Evolution, 3(6): 1808-1818.


2013 | Costa, L. Faustino, M.A.F., Tomé, J.P.C., Neves, M.G.P.M.S., Tomé, A. C., Cavaleiro, J.A.S., Cunha, A., Almeida, A. Involvement of type I and type II mechanisms on the photoinactivation of non-enveloped DNA and RNA bacteriophages. Journal of Photochemistry and Photobiology B: Biology, 120: 10-16.


2013 | Domingues, P.M., Louvado, A., Oliveira, V., Coelho, F.J.C.R., Almeida, A. Gomes, N.C.M., Cunha, A. Selective cultures for the isolation of biosurfactant producing bacteria: comparison of different combinations of environmental inocula and hydrophobic carbon sources. Preparative Biochemistry & Biotechnology, 43(3): 237-55.


2013 | Gomes, M.C., Fernandes, R., Cunha, A., Tomé, J.P.C., Trindade, T. Fluorescence biolabeling using methylated silica nanoparticles containing a lanthanide complex. Journal of Materials Chemistry B, 1:5429-5435.


2013 | Gomes, M.C., Silva, S., Faustino, M.A.F., Neves, M.G.P.M.S., Almeida, A., Cavaleiro, J.A.S., Tomé, J.P.C., Cunha, A. Cationic galactoporphyrin photosensitisers against UV-B resistant bacteria: oxidation of lipids and proteins by 1 O2. Photochemical & Photobiological Sciences 12: 262–271.


2013 | Oliveira, J., Cunha, Â., Almeida, A., Castilho, F. and Pereira, M. Comparison of Methodologies for the Extraction of Bacterial DNA from Mussels — Relevance for Food Safety. Food Analytical Methods, 6(1) 201-209.


2013 | Salvador, A.C., Baptista, I., Barros, A.S., Gomes, N., Cunha, A., Almeida, A., Rocha, S.M. Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level in cereal grains and coffee beans? PLoS One, PLoS ONE 8(4):e59338.


2013 | Santos, A.L., Gomes, N.C.M., Henriques, I., Almeida, A., Correia, A., Cunha, A. Role of transition metals in UV-B induced damage to bacteria. Photochemistry and Photobiology, 89(3):640-8.


2013 | Santos, A.L., Henriques, I., Gomes, N.C.M., Almeida, A., Correia, A., Cunha, A. Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate. Photochemical & Photobiological Science, 12:974-986.


2013 | Santos, A.L., Moreirinha, A.C., Lopes, D., Esteves, A.C., Henriques, I., Almeida, A., Domingues, M.R., Delgadillo, I., Correia, A., Cunha, A. Effects of UV Radiation on the Lipids and Proteins of Bacteria Studied by Mid-Infrared Spectroscopy. Environmental Science & Technology, 47 (12):6306–6315.


2013 | Santos, A.L. Oliveira, V., Baptista, I., Henriques, I., Gomes, N.C.M., Almeida, A., Correia, A., Cunha, A. Wavelength dependence of biological damage induced by UV radiation on bacteria. Archives of Microbiology. 195, 1, 63-74.


 


2012 | Costa, D.C.S., Gomes, M.C., Faustino, M.A.F., Neves, M.G.P.M.S., Cunha, A., Cavaleiro, J.A.S., Almeida, A., Tomé, J.P.C. Comparative photodynamic inactivation of antibiotic resistant bacteria by first and second generation cationic photosensitizers. Photochemical & Photobiological Sciences, 11, 1905–1913.


2012 | Costa, L., Faustino, M.A.F., Neves, M.G.P.M.S., Cunha, A., Almeida, A., Photodynamic inactivation of mammalian viruses and bacteriophages. Viruses 4, 1034-1074.


2012 | Costa, L., Tomé, J.P.C., Neves, M.G.P.M.S., Tomé, A. C., Cavaleiro, J.A.S., Cunha, A., Faustino, M.A.F., Almeida, A. Susceptibility of non-enveloped DNA- and RNA–type viruses to photodynamic inactivation. Photochemical & Photobiological Sciences. 11 (10):1520-1523.


2012 | Cruz A., Oliveira V., Baptista I., Almeida A., Cunha A., Suzuki S., Mendo S. Effect of tributyltin (TBT) in the metabolic activity of TBT-resistant and sensitive estuarine bacteria. Environmental Toxicology. 27(1): 11-17.


2012 | Louvado, A., Coelho, F., Domingues, P., Santos, A.L., Gomes, N.C.M., Almeida, A., Cunha, A. Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer. Journal of Microbiology and Biotechnology, 22(3):283-291.


2012 | Nogueira, V.I.J.O., Lopes, I., Rocha-Santos, T., Santos, A.L., Rasteiro, M.G., Antunes, F., Gonçalves, F., Soares, A.M.V.M., Almeida, A., Cunha, A., Gomes, N.C.M., Pereira, R. Impact of organic and inorganic nanomaterials on the structure of the soil microbial community. Science of the Total Environment, 424, 344-350.


2012 | Oliveira, J., Cunha, A., Castilho, F., Pereira, M.J. Bacteriophage therapy as a bacterial control strategy in aquaculture. Aquaculture International. 20:879–910


2012 | Oliveira, J., Cunha, Â., Almeida, A., Castilho, F. and Pereira, M. Comparison of Methodologies for the Extraction of Bacterial DNA from Mussels — Relevance for Food Safety. Food Analytical Methods, 6(1) 201-209[A1] .


2012 | Oliveira, V., Santos, A.L., Aguiar, C., Santos, L., Salvador, A.C., Gomes, N.C.M., Silva, H., Rocha, S. M., Almeida, A., Cunha, A. Prokaryotes in saltmarsh sediments of Ria de Aveiro: Effects of halophyte vegetation on abundance and diversity. Estuarine, Coastal and Shelf Science 110, 61-68.


2012 | Pereira, J. B., Carvalho, E.F.A., Faustino, M.A.F., Fernandes, R., Neves, M.G.P.M.S., Cavaleiro, J.A.S., Gomes, N.C.M, Cunha, A., Tomé, J.P.C. Phthalocyanine thio-pyridinium derivatives as antibacterial photosensitizers. Photochemistry & Photobiology, 88(3):537-547.


2012 | Pires, A.C.C., Cleary, D.F.R., Almeida, A., Cunha, A., Dealtry, S., Mendonça-Hagler, L.C.S., Smalla, K., Gomes, N.C.M. Denaturing gradient gel electrophoresis (DGGE) and barcoded-pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples. Applied Environmental Microbiology 78(16): 5520-5528.


2012 | Prata, C., Ribeiro, A., Cunha, A., Gomes, N.C.M., Almeida, A. Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particles enumeration as a new approach to determine the efficiency of recovery. Journal of Environmental Monitoring, 14(1):64-70.


2012 | Santos, A.L., Gomes, N.C.M., Henriques, I., Almeida, A., Correia, A., Cunha, A. Contribution of reactive oxygen species to UV-B-induced damage in bacteria. Journal of Photochemistry and Photobiology B: Biology 117: 40-46.


2012 | Santos, A.L. Lopes, S., Batista, I., Henriques, I., Gomes, N.C.M., Almeida, A., Correia, A., Cunha, A. The UV Responses of bacterioneuston and bacterioplankton isolates depend on the physiological condition and involve a metabolic shift. FEMS Microbiology Ecology, 80(3): 646-658.


2012 | Santos, A.L., Oliveira, V., Baptista, I., Henriques, I., Gomes, N.C.M., Almeida, A., Correia, A., Cunha, A. Effects of UV-B radiation on the structural and physiological diversity of bacterioneuston and bacterioplankton. Applied Environmental Microbiology, 78(6):2066-2069.


2012 | Silva, R., Tomé, A., Tomé, J., Neves, M.G.P.M.S., Faustino, M.A.F., Cavaleiro, J.A.S., Oliveira, A., Al, Jmeida, A., Cunha, A. Photoinactivation of Bacillus endospores: inter-specific variability of the inactivation efficiency. Microbiology and Immunology 56: 692-699.


2012 | Vieira, A., Silva, Y.J., Cunha, Â., Gomes, N.C.M., Almeida, A. Phage therapy to control multidrug-resistant Pseudomonas aeruginosa skin infections: in vitro and ex vivo experiments. European Journal of Clinical Microbiology & Infectious Diseases. 31(11):3241-3249.


2011 | Alves, E., Faustino, M.A.F., Tomé, J.P.C., Neves, M.G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Cunha, A., Gomes, N.C.M., Almeida, A. Photodynamic antimicrobial therapy in aquaculture: photoinactivation studies of Vibrio fischeri. PLoS ONE 6(6): e20970. doi:10.1371/journal.pone.0020970.


2011 | Alves, E., Almeida, A., Costa, L., Cunha, A., Faustino, A., Neves, G. Bioluminescence and its application in the monitoring of antimicrobial photodynamic therapy Applied Microbiology and Biotechnology. 92(6):1115-1128.


2011 | Arrojado, C., Pereira, C., Carvalho, C.M.B., Tomé, J.P.C., Faustino, M.A.F., Neves, M.G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Cunha, A., Gomes, N.C.M., Almeida, A. Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems. Photochemical & Photobiological Sciences 10(10):1691-1700.


2011 | Baptista, I., Santos, A. L., Cunha, A., Gomes, N., Almeida, A. Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation. Aquatic Microbial Ecology 62(3): 299-310.


2011 | Costa, L. Tomé, J.P.C., Neves, M.G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Faustino, F.A.F., Cunha, A., Gomes, N.C.M., Almeida, A. Evaluation of resistance development and viability recovery by a non-enveloped virus after repeated cycles of aPDT. Antiviral Research, 91(3), 278-282.


2011 | Coelho, F.J.R.C., Sousa, S., Santos, L., Santos, A.L., Almeida, A., Gomes, N.C.M., Cunha, A. Exploring the hydrocarbonoclastic bacterial communities in the estuarine surface microlayer. Aquatic Microbial Ecology, 64:185-195.


2011 | Gomes, M.C., Woranovicz-Barreira, S.M., Faustino, M.A.F.,  Fernandes, R., Neves, M.G.P.M.S., Tomé, A.C., Gomes, N.C.M., Almeida, A., Cavaleiro, J.A.S., Cunha, A., Tomé, J.P.C. Photodynamic inactivation of Penicillium chrysogenum conidia by cationic porphyrins. Photochemical & Photobiological Sciences 10, 1735-1743.


2011 | Oliveira, J., Cunha, A., Castilho, F., Romalde, J.L. Pereira, M.J. Microbial contamination and purification of bivalve shellfish: Crucial aspects in monitoring and future perspectives - A mini-review. Food Control 22, 805-816.


2011 | Pereira, C., Salvador, S., Arrojado, C., Silva, Y.S., Santos, A.L., Cunha, A., Gomes, N.C.M., Almeida, A. Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy. Journal of Environmental Monitoring, 13 (4):1053-1058.


2011 | Pereira, C., Silva, Y.S., Cunha, A., Gomes, N.C.M., Almeida, A. Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival, host specificity and effect on bacterial community structure. Marine Drugs, 9(11), 2236-2255.


2011 | Prata, C., Ribeiro, A., Cunha, A., Gomes, N.C.M., Almeida, A. Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particles enumeration as a new approach to determine the efficiency of recovery. Journal of Environmental Monitoring, 14(1):64 - 70.


2011 | Santos, A.L., Henriques, I., Correia, A., Gomes, N.C.M., Almeida, A., Cunha, A. Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: Insights from microcosm studies. Aquatic Sciences, 73(1):63–77.


2011 | Santos, A.L., Lopes, S., Baptista, I., Henriques, I., Gomes, N.C.M., Almeida, A., Correia, A., Cunha, A. Diversity in UV sensitivity and recovery potential among bacterioneuston and bacterioplankton isolates. Letters in Applied Microbiology 52: 360-366.


2011 | Santos, L., Santos, A., Coelho, F., Gomes, N.C.M., Dias, J., Cunha, A., Almeida, A. Relation between bacterial activity at the surface microlayer and estuarine hydrodynamics. FEMS Microbiology Ecology 77(3):636-646.


2011 | Tavares, A., Dias, S.R.S., Carvalho, C.M.B., Faustino, M.A.F., Tomé, J.P.C., Neves, M.G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Cunha, A., Gomes, N.C.M., Alves, E., Almeida, A. Mechanisms of photodynamic inactivation of a Gram-negative recombinant bioluminescent bacterium by cationic porphyrins. Photochemical & Photobiological Sciences 10(10): 1659 - 1669.


2010 | Carvalho, C., Alves, E., Costa, L., Tomé, J., Faustino, M., Neves, M., Tomé, A., Cavaleiro, J., Almeida, M., Cunha, A., Rocha, J., Lin, Z. Functional Cationic Nanomagnet-Porphyrin Hybrids for the Photoinactivation of Microorganisms. ACS Nano 4, 12, 7133–7140.


2010 | Costa L., Carvalho C., Tomé J., Faustino A., Neves G., Tomé A., Cavaleiro J., Cunha A., Almeida A. Sewage bacteriophage inactivation by cationic porphyrins: influence of light parameters. Photochemical & Photobiological Sciences. 9, 1126-1133.


2010 | Gomes, N.C.M., Cleary, D.F.R., Pinto, F.N., Egas, C., Almeida, A., Cunha, A., Mendonça-Hagler, L.C.S., Smalla, K. Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PLoS ONE 5(11): e14065. doi:10.1371/journal.pone.0014065


2010 | Lopes, J. F., Almeida, M.A., Cunha, A. Modelling the ecological patterns of a temperate lagoon in a very wet spring season. Ecological Modelling, 221:2302-2322.


2010 | Oliveira, V., Santos, A. L., Coelho, F., Gomes, N.C.M., Almeida, A., Cunha, A. Effects of monospecific banks of salt marsh vegetationon sediment bacterial communities. Microbial Ecology, 60(1):167–179.


2010 | Tavares, A., Carvalho, C.M.B., Faustino; M.A., Neves, M.G.P.M.S., Tomé, J.P.C., Tomé, A.C., Cavaleiro, J.A.S., Cunha, A.,  Gomes, N., Alves, E., Almeida, A. Antimicrobial photodynamic therapy: study of bacterial recovery viability and development of potential resistance after treatment. Marine Drugs 8(1): 91-105.


2009 | Almeida A., Cunha Â., Gomes N. C., Alves E., Costa L., Faustino M. A. Phage Therapy and Photodynamic Therapy: Low Environmental Impact Approaches to Inactivate Microorganisms in Fish Farming Plants. Marine Drugs, 7(3):268-313.


2009 | Alves, E., Costa, L., Carvalho, C.M.B., Tomé, J.P.C., Faustino, M.A.F., Neves, M.G.P.S., Tomé, A.C., Cavaleiro, J.A.C., Cunha, A., Almeida, A. Charge effect on the photoinactivation of Gram-negative and Gram-positive bacteria by cationic meso-substituted porphyrins. BMC Microbiology, 9:70-83.


2009 | Carvalho, C.M.B., Tomé, J.P.C., Faustino, M.A.F., Neves, M G.P.M.S., Tomé, A.C., Cavaleiro, J.A.S., Costa, L., Alves, E., Oliveira, A., Cunha, A., Almeida, A. Antimicrobial photodynamic activity of porphyrin derivatives: Potential application on medical and water disinfection. Journal of Porphyrins and Phthalocyanines, 13: 574–577.


2009 | Cunha, A., Almeida, A. Inorganic nutrient regulation of bacterioplankton heterotrophic activity in an estuarine system (Ria de Aveiro, Portugal). Hydrobiologia, 628(1):81-93.


2009 | Lopes, A.R., Azeiteiro, U.M., Bessa, V.S., Pereira, C., Salvador, S., Almeida, A., Cunha, M.A., Pereira, M.J. Spring pelagic communties of phytoplankton, cyanobacteria, associated heterotrophic bacteria and viruse in an eutrophic shallow temperate lake. Fresenius Environmental Bulletin, 18(5b):875-884.


2009 | Oliveira, A., Almeida, A., Carvalho, C. M. B., Tomé, J. P. C., Faustino, M. A. F., Neves, M. G. P. M. S., Tomé, A. C., Cavaleiro, J. A. S., Cunha, A. Porphyrin derivatives as photosensitizers for the inactivation of Bacillus cereus endospores. Journal of Applied Microbiology, 106:1986–1995.


2009 | Santos, A.L., Mendes, C., Gomes, N.C.M., Henriques, I., Correia, A., Almeida, A., Cunha, A. Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton. Journal of Plankton Research, 31(12):1545-1555.


2008 | Alves, E., Carvalho, C. M. B. Tomé, J. P. C., Faustino, M. A. F., Neves, M. G. P. S., Tomé, A. C., Cavaleiro, J. A. S., Cunha, A., Mendo, S., Almeida, A. Photodynamic inactivation of recombinant bioluminescent Escherichia coli by cationic porphyrins under artificial and solar irradiation. Journal of Industrial Microbiology & Biotechnology, 35(11):1447-54.


2008 | Costa, L., Alves, E., Carvalho, C. M. B., Tomé, J. P. C., Faustino, M. A. F., Neves, M. G. P. S., Tomé, A. C., Cavaleiro, J. A. S., Cunha, A., Almeida, A. Sewage bacteriophage photoinactivation by cationic porphyrins: a study of charge effect. Photochemical and Photobiological Sciences, 7:415- 422.


2007 | Almeida, M. A., Cunha, M. A., Dias, J. Bacterial productivity distribution during a rainy year in an estuarine system. Microbial Ecology, 53:208–220.


2007 | Almeida, M. A., Cunha, M. A., Fernandes, S., Sobral, P., Alcântara, F. Copper effects on bacterial activity of estuarine silty sediments. Estuarine, Coastal and Shelf Science, 73: 743-752.


2007 | Carvalho, C., Gomes, A., Fernandes, S., Prata, A., Almeida, M. A., Cunha, M. A., Tomé, J., Faustino, M. A., Neves, M. G., Tomé, A., Cavaleiro, J. A., Lin, Z., Rainho, J., Rocha, J. Photoinactivation of bacteria in wastewater by porphyrins: Bacterial b-galactosidase activity and leucine-uptake as methods to monitor the process. Journal of Photochemistry and Photobiology B: Biology, 88:112–118.


2007 | Santos, L., Cunha, M.A., Silva, H., Caçador, I., Dias, J.M., Almeida M.A. Influence of salt marsh on bacterial activity in two estuaries with different hydrodynamic characteristics (Ria de Aveiro and Tagus Estuary). FEMS Microbiology Ecolology, 60:429–441.


2006 | Cunha, A., Almeida, A. Influence of an estuarine plume and a marine sewage outfall on the dynamics of coastal bacterioplankton communities. Aquatic Microbial Ecology, 44:253-262.


2006 | Cunha, A., Almeida, A., Ré A., Martins A., Alcântara, F. Perylene toxicity in the estuarine environment of Ria de Aveiro (Portugal). Ecotoxicology, 15(2):171-185.


2006 | Henriques, I. S., Alves, A., Tacão, M., Almeida, A., Cunha, A., Correia, A. Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal). Estuarine, Coastal and Shelf Science, 68:139-148.


2005 | Almeida, M. A., Cunha, M. A., Alcântara, F. Relationship of bacterioplankton production with primary production and respiration in a shallow estuarine system (Ria de Aveiro, NW Portugal). Microbiological Research 160(3):315-328.


2005 | Cunha, A., Pedro, R., Almeida, A., Silva, H. Activity and growth efficiency of heterotrophic bacteria in a salt marsh (Ria de Aveiro, Portugal). Microbiological Research, 160(3): 279-290.


2004 | Henriques, I., Almeida, A., Cunha, A., Correia, A. Molecular sequence analysis of prokaryotic diversity in the middle and outer sections of the Portuguese estuary Ria de Aveiro. FEMS Microbiology Ecology, 49:269–279.


2004 | Pato, P., Pinto, C., Cunha, A., Almeida, M.A., Pereira, E., Vale, C., Duarte A. Tidal variability in the transport of particulate mercury. RMZ – Materials and Geoenvironment, 51(1):1300-1303.


2004 | Yamasaki, A., Cunha, M.A.S.D.A, Oliveira, J. A. B. P., Duarte, A. C., Gomes, M. T. S. R. Assessment of copper toxicity using an acoustic wave sensor. Biosensors & Bioelectronics, 19:1203-1208.


2003 | Cunha, M. A., Almeida, M. A., Alcântara, F. Ectoenzymatic activity and glucose heterotrophic metabolism in a shallow estuary (Ria de Aveiro, Portugal): influence of bed sediments and salt marshes. Acta Oecologica 24: S97-S107.


2003 | Cunha, M. A., J. M. Dias, Almeida, M. A., Lopes, J. F., Alcântara, F. Fluxes of bacterioplankton between a tidal estuary and the sea: returning to the “Outwelling Hypothesis”. Aquatic Ecology, 37(1):45-54.


2002 | Almeida, M. A., Cunha, M. A., Alcântara, F. Is bacterioplankton production in the Ria de Aveiro influenced by of salt marshes and bed sediment? Aquatic Ecology, 36(4):469-482.


2002 | Almeida, M. A., Cunha, M. A., Alcântara, F. Seasonal changes in the proportion of bacterial and phytoplankton production along a salinity gradient in a shallow estuary. Hydrobiologia, 475(1):251-262.


2001 | Almeida, M. A., Cunha, M. A., Alcântara, F. Factors influencing bacterial production in shallow estuarine systems. Microbial Ecology, 42(3):416-426.


2001 | Almeida, M. A., Cunha, M. A., Alcântara, F. Loss of estuarine bacteria by viral infection and predation in microcosm conditions. Microbial Ecology, 42(4):562-571.


2001 | Almeida, M. A., Cunha, M. A., Alcântara, F. Physiological responses of marine and brackish water bacterial assemblages in a tidal estuary (Ria de Aveiro, Portugal). Aquatic Microbial Ecology, 25:113-125.


2001 | Cunha, M. A., Almeida, M. A., Alcântara, F. Short-time responses of the natural planktonic bacterial community to the changing water properties in an estuarine environment: ectoenzymatic activity, glucose incorporation and biomass production. Microbial Ecology 42(1):69-79.


2000 | Cunha, M. A., Almeida, M. A., Alcântara, F. Patterns of ectoenzymatic and heterotrophic bacterial activities along a salinity gradient in a shallow tidal estuary. Marine Ecology Progress Series, 204:1-12.


1999 | Cunha, M. A., Almeida, M. A., Alcântara, F. Compartments of oxygen consumption in a tidal mesotrophic estuary. Acta Oecologica, 20(4):227-235.

Edition of publications

H. Queiroga, M.R. Cunha, A. Cunha, M.H. Moreira, V. Quintino, A.M.Rodrigues, J. Serôdio, R.M. Warwick (Eds) (2006). Marine Biodiversity: Patterns and processes, Assessment, Threats, Mangement and conservation. Proceedings of the 38th European Marine Biology Symposium, Aveiro, Portugal, September 8-12, 2003. Developments in Hydrobiology 183, Springer. 353 pp.

Chapters of books

2017 | Cruz, A., Cavaleiro, A.J., Paulo, A., Louvado, A., Alves, M., Almeida, A., Cunha, A. Microbial Remediation of Organometals and Oil Hydrocarbons in the Marine Environment. In: Naik, MM, Dubey, SK (eds.) Marine Pollution and Microbial Remediation. Springer Singapore, Singapore, pp. 41-66 (in press).


2011 | Almeida, A., Cunha, A., Faustino, M.A.F., Tomé, A. C., Neves, M. G. P. M. S. Porphyrins as Antimicrobial Photosensitizing Agents. In: Photodynamic inactivation of microbial pathogens. Medical and environmental applications. M. R. Hamblin, G. Jori (Eds). Comprehensive Series in Photochemistry and Photobiology, Vol. 11, Chapter 5. RSC Publishing, Cambridge, UK, pp: 83-160. ISBN: 978-84973-144-7.


2010 | Coelho, F.J.R., Sousa, S., Santos, L., Santos, A.L., Almeida, A., Gomes, N.C.M., Cunha, A. PAH degrading bacteria in an estuarine system. In: Interdisciplinary Studies on Environmental Chemistry — Biological Responses to Contaminants. Hamamura, N., Suzuki, S., Mendo, S., Barroso, C.M., Iwata, H., Tanabe, S. (Eds.) Terrapub, Tokyo, Japan. pp. 77-87.


2010 | Cunha, A., Almeida, A., Coelho, F.J.R.C., Gomes, N.C.M., Oliveira, V., Santos, A. L. Bacterial Extracellular Enzymatic Activity in Globally Changing Aquatic Ecosystems. Microbiology Book Series, Volume # 2: Current Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology, p: 124-135.


2010 | Louvado, L., Santos, A.L., Coelho, F.J.R., Sousa, S., Moreira, A., Gomes, F., Almeida, A., Gomes, N.C.M., Cunha, A. Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. In: Interdisciplinary Studies on Environmental Chemistry — Biological Responses to Contaminants. Hamamura, N., Suzuki, S., Mendo, S., Barroso, C.M., Iwata, H., Tanabe, S. (Eds.) Terrapub,Tokyo,Japan. pp. 88-95.


2010 | Santos, A.L., Baptista, I., Oliveira, V., Henriques, I., Gomes, N.C.M., Almeida, A., Correia, A., Cunha, A.  Oxidative stress induced by photochemical reactions occuring at the surface microlayer. In: Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products. Mendez-Vilas, A. (Ed.) World Scientific Publishing Co. Singapura, p:181-184. ISBN-13: 978-981-4322-10-2.


2009 | Oliveira, A., Almeida, A., Carvalho, C., Tomé, J., Faustino, M. A. F., Neves, M. G., Tomé, A. C., Cavaleiro, J., Cunha, A. Assessment of the performance of porphyrin derivatives as photosensitizers for the inactivation of bacterial endospores. In: Current Research Topics in Applied Microbiology and Microbial Biotechnology. Mendez-Vilas A. (Ed). World Scientific Publishing Co. Pte. Ltd.,Singapore, pp: 166-169. ISBN-13: 978-981-283-754-7.


2007 | Almeida, A., Cunha, A., Santos, L., Salvador, S., Gomes, A. Evaluation of the impact of two aquaculture systems on bacterial communities of the estuarine system Ria de Aveiro. In: Current Research Topics in Applied Microbiology and Microbial Biotechnology. Mendez-Vilas A. (Ed). World Scientific Publishing Co. Pte. Ltd., Singapore, pp: 236-239. ISBN-13: 978-981-283-754-7.


2007 | Costa, C., Carvalho, C. M. B., Tomé, J. P. C., Faustino, M. A. F.,  Neves, M. G. P. S., Tomé, A. C., Cavaleiro, J. A. S., Lin, Z., Rainho, J. P., Rocha, J., Cunha, A., Almeida, A. Sewage bacteriophage photoinactivation by immobilized porphyrins in solid matrixes. In: Current Research Topics in Applied Microbiology and Microbial Biotechnology. Mendez-Vilas A. (Ed). World Scientific Publishing Co. Pte. Ltd.,Singapore, pp: 338-341. ISBN-13: 978-981-283-754-7.


2006 | Cunha A., Almeida, A., Ré A., Martins A. e Alcântara, F. Perylene toxicity in the estuarine environment of Ria de Aveiro (Portugal). In: Modern Multidisciplinary Applied Microbiology - Exploiting Microbes and their Interactions. Mendez-Vilas A. (Ed). Wiley-VCH, Weinheim, pp:125-129.

Scientific Supervision
Post-doc (Co-supervisor): Vanessa Oliveira

PhD (Main Supervisor): Maria João Ferreira
(not a CESAM member)
PhD (Main Supervisor): Patrícia Maia Domingues
PhD (Co-supervisor): Lúcia Fernandez
(not a CESAM member)
PhD (Co-supervisor): Maria Clara Gomes
(not a CESAM member)
PhD (Co-supervisor): Raquel Silva
(not a CESAM member)

Master (Main Supervisor): Carolina Figueira
(not a CESAM member)
Master (Main Supervisor): Sofia Cruzeiro
(not a CESAM member)
Master (Co-supervisor): Daniel Bonifácio
(not a CESAM member)

Post-doc (Co-supervisor): Anabela de Oliveira Pereira

PhD (Main Supervisor): Francisco Coelho
PhD (Main Supervisor): Vanessa Oliveira
PhD (Main Supervisor): Ana Luísa Mendes dos Santos
(ex-CESAM member)
PhD (Co-supervisor): Luísa Santos
(ex-CESAM member)
PhD (Co-supervisor): Jacinta Oliveira

Master (Main Supervisor): Ana Rita Alves
(not a CESAM member)
Master (Main Supervisor): Bruna David
(not a CESAM member)
Master (Main Supervisor): André Marques
(not a CESAM member)
Master (Main Supervisor): Angela Pereira
(not a CESAM member)
Master (Main Supervisor): Anabela Amorim Oliveira
(ex-CESAM member)
Master (Main Supervisor): Francisco Coelho
Master (Main Supervisor): Vanessa Oliveira
Master (Main Supervisor): Nádia Osório
(ex-CESAM member)
Master (Main Supervisor): Antonio Miguel de Oliveira Louvado
Master (Main Supervisor): Clara Gomes
(ex-CESAM member)
Master (Main Supervisor): Adriana Margarida Macedo Pereira dos Reis
(ex-CESAM member)
Master (Main Supervisor): José António Medeiros
(not a CESAM member)
Master (Main Supervisor): Patrícia Maia Domingues
Master (Main Supervisor): Veronika Lykoholat
(not a CESAM member)
Master (Main Supervisor): Sandra Beirão
(not a CESAM member)
Master (Main Supervisor): Sara Fernandes
(not a CESAM member)
Master (Main Supervisor): Ana Patrícia Amaro
(not a CESAM member)
Master (Main Supervisor): Veronika Lykholat
(not a CESAM member)
Master (Main Supervisor): Sara Fernandes
(not a CESAM member)
Master (Main Supervisor): Sandra Beirão
(not a CESAM member)
Master (Main Supervisor): Ana Patrícia Silva
(not a CESAM member)
Master (Main Supervisor): Marina Ferreira
(not a CESAM member)
Master (Main Supervisor): Sónia Pereira
(not a CESAM member)
Master (Main Supervisor): Ana Fernandes
(not a CESAM member)
Master (Main Supervisor): Joana Couceiro
(not a CESAM member)
Master (Co-supervisor): Vânia Bessa
(ex-CESAM member)
Master (Co-supervisor): Inês Sousa
(ex-CESAM member)
Master (Co-supervisor): Susana Rodrigues
(not a CESAM member)
Master (Co-supervisor): Susana Branco
(not a CESAM member)
Master (Co-supervisor): Sónia Fernandes
(not a CESAM member)
Master (Co-supervisor): Ana Cecília da Cruz Pires
Master (Co-supervisor): Pedro Renato Almeida
(not a CESAM member)
Master (Co-supervisor): Cristiana Silva
(not a CESAM member)
Master (Co-supervisor): Diana Gomes
(not a CESAM member)
Master (Co-supervisor): Celso Martins
(not a CESAM member)
Master (Co-supervisor): Deisy Rocha
(not a CESAM member)
Master (Co-supervisor): Isa Mira
(not a CESAM member)
Master (Co-supervisor): Linda Santos
(not a CESAM member)
Master (Co-supervisor): Vânia de Araújo
(not a CESAM member)



Projects
EcoTech-SPONGE- Assessing the ecological functions and potential biotechnological applications of plasmid assemblages from microbial symbionts of marine sponges [see details]

FRESHMEAT-AP - Carne fresca com prazo de validade alargado e maior segurança microbiológica recorrendo à tecnologia de Altas Pressões (AP) [see details]

Impact of solar radiation on dissolved organic matter photochemical and microbial processes in the estuarine environment [see details]

PTDC/CPE-CED/117516/2010 A study of academic development in universities through innovative approaches in teaching, assessment and feedback. [see details]

Rapid methods for the testing of tetrapyrrolic derivatives as photosensitizers for photodynamic antimicrobial therapy [see details]

Desenvolvimento de Novas Tecnologias de Suporte à Criação de Produtos Inovadores (NOVELTEC) [see details]

Phage therapy - a new technology to depurate shellfish - Depurofago [see details]

AQUASAFE - Development of new technologies to anticipate and diagnose disease outbreaks in aquaculture [see details]

RASTREMAR - Use of molecular tools in the traceability of marine food products [see details]

Phage therapy as a low environmental impact alternative to inactive phatogenic bacteria in fishfarming plants. [see details]

Global climate change and pollution: a synergy designed for disaster? [see details]

SWIMGLO - The Gloria-SWIM plate boundary Faults connection and its importance on the propagation of tectonic deformation and deep [see details]

Desenvolvimento de um equipamento de medição do nível/grau de higienização e fúngico de produtos alimentares e de embalagem – MicroMed. [see details]

MARMER: The role of salt marsh plants on mercury cycle. Identifying plant-bacteria-Hg interactions critical for ecosystem remediation [see details]

Dynamics of cyanobacteria and cyanotoxins in the Guadiana estuary - DYNCYANO [see details]

Publications
  1. Castro K.A.D.F., Moura N.M.M., Fernandes A., Faustino M.A.F., Simoes M.M.Q., Cavaleiro J.A.S., Nakagaki S., Almeida A., Cunha A., Silvestre A.J.D., Freire C.S.R., Pinto R.J.B., Neves M.D.P.M.S. (2017) Control of Listeria innocua biofilms by biocompatible photodynamic antifouling chitosan based materials. Dyes And Pigments. 137, 265-276. (see details) ISI paper
  2. Fernandez L., Louvado A., Esteves V.I., Gomes N.C.M., Almeida A., Cunha A. (2017) Biodegradation of 17 beta-estradiol by bacteria isolated from deep sea sediments in aerobic and anaerobic media. Journal Of Hazardous Materials. 323, 359-366. (see details) ISI paper
  3. Oliveira V, Gomes NCM, Santos M, Almeida A, Lillebø A, Ezequiel J, Serôdio J, Silva AMS, Simões MMQ, Rocha SM, Cunha A (2017) Effects of the inoculant strain Pseudomonas sp. SPN31 nah+ and of 2-methylnaphthalene contamination on the rhizosphere and endosphere bacterial communities of Halimione portulacoides. Current Microbiology. (see details) ISI paper
  4. Kuznetsova A., Domingues P.M., Silva T., Almeida A., Zheludkevich M.L., Tedim J., Ferreira M.G.S., Cunha A. (2017) Antimicrobial activity of 2-mercaptobenzothiazole released from environmentally friendly nanostructured layered double hydroxides. Journal Of Applied Microbiology. 122, 5, 1207-1218. (see details) ISI paper
  5. Domingues P.M., Almeida A., Leal L.S., Gomes N.C.M., Cunha A. (2017) Bacterial production of biosurfactants under microaerobic and anaerobic conditions. Reviews In Environmental Science And Bio-technology. 16, 2, 239-272. (see details) ISI paper
    Link: https://link.springer.com/article/10.1007%2Fs11157-017-9429-y
  6. Domingues P, Almeida A, Leal L, Gomes N, Cunha A (2017) Bacterial production of biosurfactants under microaerobic and anaerobic conditions. Reviews In Environmental Science And Bio-technology. 16, 2, 239-272. (see details) ISI paper
  7. Fernandez L., Borzecka W., Lin Z., Schneider R.J., Huvaere K., Esteves V.I., Cunha A., Tome J.P.C. (2017) Nanomagnet-photosensitizer hybrid materials for the degradation of 17 beta-estradiol in batch and flow modes. Dyes And Pigments. 142, 535-543. (see details) ISI paper
  8. Alves C., Duarte M., Ferreira M., Alves A., Almeida A., Cunha A. (2016) Air quality in a school with dampness and mould problems. Air Quality Atmosphere And Health. 9, 2, 107-115. (see details) ISI paper
    Link: http://dx.doi.org/10.1007/s11869-015-0319-6
  9. Ferreira M., Pereira S., Almeida A., Queiros R., Delgadillo I., Saraiva J., Cunha A. (2016) Effect of temperature and compression rates on high pressure inactivation of Listeria. Acta Alimentaria. 45, 1, 61-68. (see details) ISI paper
  10. Ferreira M., Almeida A., Delgadillo I., Saraiva J., Cunha A. (2016) Susceptibility of Listeria monocytogenes to high pressure processing: A review. Food Reviews International. 32, 4, 377-399. (see details) ISI paper
  11. Silva Y.J., Moreirinha C., Pereira C., Costa L., Rocha R.J.M., Cunha A., Gomes N.C.M., Calado R., Almeida A. (2016) Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole (Solea senegalensis) with Phage AS-A. Aquaculture. 450, 225-233. (see details) ISI paper
  12. Simoes C., Gomes M.C., Neves M.G.P.M.S., Cunha A., Tome J.P.C., Tome A.C., Cavaleiro J.A.S., Almeida A., Faustino M.A.F. (2016) Photodynamic inactivation of Escherichia coli with cationic meso-tetraarylporphyrins - The charge number and charge distribution effects. Catalysis Today. 266, 197-204. (see details) ISI paper
    Link: http://www.sciencedirect.com/science/article/pii/S0920586115004228
  13. Alves E., Moreirinha C., Faustino M.A.F., Cunha A., Delgadillo I., Neves M.G.P.M.S., Almeida A. (2016) Overall biochemical changes in bacteria photosensitized with cationic porphyrins monitored by infrared spectroscopy. Future Medicinal Chemistry. 8, 6, 613-628. (see details) ISI paper
  14. Santos L., Pinto A., Filipe O., Cunha A., Santos E.B.H., Almeida A. (2016) Insights on the Optical Properties of Estuarine DOM - Hydrological and Biological Influences. Plos One. 11, 5, (see details) ISI paper
  15. Pereira C., Moreirinha C., Lewicka M., Almeida P., Clemente C., Cunha A., Delgadillo I., Romalde J.L., Nunes M.L., Almeida A. (2016) Bacteriophages with potential to inactivate Salmonella Typhimurium: Use of single phage suspensions and phage cocktails. Virus Research. 220, 179-192. (see details) ISI paper
  16. Fernandez L., Esteves V.I., Cunha A., Schneider R.J., Tome J.P.C. (2016) Photodegradation of organic pollutants in water by immobilized porphyrins and phthalocyanines. Journal Of Porphyrins And Phthalocyanines. 20, 1-4, 150-166. (see details) ISI paper
    Link: http://dx.doi.org/10.1142/S108842461630007X
  17. Coelho F.J.R.C., Louvado A., Domingues P.M., Cleary D.F.R., Ferreira M., Almeida A., Cunha M.R., Cunha A., Gomes N.C.M. (2016) Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz. Scientific Reports. 6, 35272, (see details) ISI paper
    Link: https://www.nature.com/articles/srep35272
  18. Baptista I., Rocha S.M., Cunha A., Saraiva J.A., Almeida A. (2016) Inactivation of Staphylococcus aureus by high pressure processing: An overview. Innovative Food Science & Emerging Technologies. 36, 128-149. (see details) ISI paper
  19. Bartolomeu M., Coimbra S., Cunha A., Neves M.G.P.M.S., Cavaleiro J.A.S., Faustino M.A.F., Almeida A. (2016) Indirect and direct damage to genomic DNA induced by 5,10,15-tris(1-methylpyridinium-4-yl)-20-(pentafluorophenyl)porphyrin upon photodynamic action. Journal Of Porphyrins And Phthalocyanines. 20, 1-4, 331-336. (see details) ISI paper
  20. Bartolomeu M., Rocha S., Cunha A., Neves M.G.P.M.S., Faustino M.A.F., Almeida A. (2016) Effect of Photodynamic Therapy on the Virulence Factors of Staphylococcus aureus. Frontiers In Microbiology. 7, (see details) ISI paper
  21. Gomes M.C., Cunha A., Trindade T., Tome J.P.C. (2016) The role of surface functionalization of silica nanoparticles for bioimaging. Journal Of Innovative Optical Health Sciences. 9, 4, (see details) ISI paper
  22. Ferreira M., Pereira S., Almeida A., Queiros R., Delgadillo I., Saraiva J., Cunha A. (2016) EFFECT OF TEMPERATURE AND COMPRESSION/DECOMPRESSION RATES ON HIGH PRESSURE INACTIVATION OF LISTERIA. Acta Alimentaria. 45, 1, 61-68. (see details) ISI paper
  23. Alves E., Esteves A.C., Correia A., Cunha A., Faustino M.A.F., Neves M.G.P.M.S., Almeida A. (2015) Protein profiles of Escherichia coli and Staphylococcus warneri are altered by photosensitization with cationic porphyrins. Photochemical & Photobiological Sciences. 14, 6, 1169-1178. (see details) ISI paper
  24. Silva Y.J., Manco S., Costa R., Rodrigues V., Dias J., Ferreira H., Pousao-Ferreira P., Almeida A., Cunha A., Calado R., Gomes N.C.M. (2015) Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758). Aquaculture Research. 46, 7, 1760-1769. (see details) ISI paper
    Link: http://onlinelibrary.wiley.com/doi/10.1111/are.12336/abstract
  25. Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S., Silva H., Cunha A. (2015) Microbe-Assisted Phytoremediation of Hydrocarbons in Estuarine Environments. Microbial Ecology. 69, 1, 1-12. (see details) ISI paper
  26. Alves E., Faustino M.A.F., Neves M.G.P.M.S., Cunha A., Nadais H., Almeida A. (2015) Potential applications of porphyrins in photodynamic inactivation beyond the medical scope. Journal Of Photochemistry And Photobiology C-photochemistry Reviews. 22, 34-57. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.jphotochemrev.2014.09.003
  27. Baptista I., Queiros R.P., Cunha A., Rocha S.M., Saraiva J.A., Almeida A. (2015) Evaluation of resistance development and viability recovery by toxigenic and non-toxigenic Staphylococcus aureus strains after repeated cycles of high hydrostatic pressure. Food Microbiology. 46, 515-520. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.fm.2014.09.016
  28. Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Lillebo A.I., Almeida A., Cunha A., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R., Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities. Global Change Biology. 21, 5, 1871-1886. (see details) ISI paper
  29. Pereira C., Santos L., Silva A.P., Silva Y.J., Cunha A., Romalde J.L., Nunes M.L., Almeida A. (2015) Seasonal variation of bacterial communities in shellfish harvesting waters: Preliminary study before applying phage therapy. Marine Pollution Bulletin. 90, 1-2, 68-77. (see details) ISI paper
  30. Maia F., Silva A.P., Fernandes S., Cunha A., Almeida A., Tedim J., Zheludkevich M.L., Ferreira M.G.S. (2015) Incorporation of biocides in nanocapsules for protective coatings used in maritime applications. Chemical Engineering Journal. 270, 150-157. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.cej.2015.01.076
  31. Matos M.R.A., Gomes M.T.S.R., Oliveira J.A.B.P., Alves E., Cunha M.A.S.D.A., Almeida A., Rudnitskaya A. (2015) Assessment of Transition Metals Toxicity in Environmental Matrices Using Potentiometric Electrodes: Inorganic Mercury(II) in the Seawater as a Case Study. Electroanalysis. 27, 8, 1932-1938. (see details) ISI paper
    Link: 10.1002/elan.201400713
  32. Baptista I., Queiros R.P., Cunha A., Saraiva J.A., Rocha S.M., Almeida A. (2015) Inactivation of enterotoxic and non-enterotoxic Staphylococcus aureus strains by high pressure treatments and evaluation of its impact on virulence factors. Food Control. 57, 252-257. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.foodcont.2015.04.022
  33. Louvado A., Gomes N.C.M., Simoes M.M.Q., Almeida A., Cleary D.F.R., Cunha A. (2015) Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe-pollutant interactions in a remote environment. Science Of The Total Environment. 526, 312-328. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.scitotenv.2015.04.048
  34. Lourenco L.M.O., Sousa A., Gomes M.C., Faustino M.A.F., Almeida A., Silva A.M.S., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A., Tome J.P.C. (2015) Inverted methoxypyridinium phthalocyanines for PDI of pathogenic bacteria. Photochemical & Photobiological Sciences. 14, 10, 1853-1863. (see details) ISI paper
  35. Rocha D.M.G.C., Venkatramaiah N., Gomes M.C., Almeida A., Faustino M.A.F., Paz F.A.A., Cunha A., Tome J.P.C. (2015) Photodynamic inactivation of Escherichia coli with cationic ammonium Zn(II) phthalocyanines. Photochemical & Photobiological Sciences. 14, 10, 1872-1879. (see details) ISI paper
  36. Sousa I., Maia F., Silva A., Cunha A., Almeida A., Evtyugin D.V., Tedim J., Ferreira M.G. (2015) A novel approach for immobilization of polyhexamethylene biguanide within silica capsules. Rsc Advances. 5, 112, 92656-92663. (see details) ISI paper
  37. Oliveira V, Silva A, Marques B, Almeida A, Gomes NCM, Lillebø A, Cunha A (2015) Microcosm assessment of the effect of an acute mercury contamination event on the structure and activity of sediment bacterial communities. Applied Microbiology - Open Access. 1:102, (see details) ISI paper
  38. Mendes C., Santos L., Cunha A., Gomes N.C.M., Almeida A. (2014) Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy. Annals Of Microbiology. 64, 2, 773-778. (see details) ISI paper
    Link: http://dx.doi.org/10.1007/s13213-013-0713-y
  39. Silva Y.J., Costa L., Pereira C., Cunha A., Calado R., Gomes N.C.M., Almeida A. (2014) Influence of environmental variables in the efficiency of phage therapy in aquaculture. Microbial Biotechnology. 7, 5, 401-413. (see details) ISI paper
    Link: http://dx.doi.org/10.1111/1751-7915.12090
  40. Santos A.L., Baptista I., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha Â. (2014) Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation. Fems Microbiology Ecology. 87, 2, 517-535. (see details) ISI paper
    Link: http://onlinelibrary.wiley.com/doi/10.1111/1574-6941.12239/abstract
  41. Alves E., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Cunha A., Almeida A. (2014) An insight on bacterial cellular targets of photodynamic inactivation. Future Medicinal Chemistry. 6, 2, 141-164. (see details) ISI paper
    Link: http://dx.doi.org/10.4155/FMC.13.211
  42. Gomes N.C.M., Cleary D.F.R., Pires A.C.C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2014) Assessing variation in bacterial, composition between the rhizospheres of two mangrove tree species. Estuarine Coastal And Shelf Science. 139, 40-45. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.ecss.2013.12.022
  43. Santos L., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2014) Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro). Journal Of Plankton Research. 36, 1, 230-242. (see details) ISI paper
    Link: http://dx.doi.org/10.1093/plankt/fbt084
  44. Mateus C., Costa C., Silva Y., Cunha A., Almeida A. (2014) Efficiency of phage cocktails in the inactivation of Vibrio in aquaculture. Aquaculture. 424, 167-173. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.aquaculture.2014.01.001
  45. Mesquita M., Menezes J., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S. , Cunha Â., Almeida A., Hackbarth S., Röder B., Faustino M.A.F. (2014) Photodynamic inactivation of bioluminescent Escherichia coli by neutral and cationic pyrrolidine-fused chlorins and isobacteriochlorins. Bioorganic & Medicinal Chemistry Letters. 24, 3, 808-812. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.bmcl.2013.12.097
  46. Almeida J., Tome J.P.C., Neves M.G.P.M.S., Tome A.C., Cavaleiro J.A.S., Cunha A., Costa L., Faustino M.A.F., Almeida A. (2014) Photodynamic inactivation of multidrug-resistant bacteria in hospital wastewaters: influence of residual antibiotics. Photochemical & Photobiological Sciences. 13, 4, 626-633. (see details) ISI paper
    Link: http://dx.doi.org/10.1039/c3pp50195g
  47. Pereira M.A., Faustino M.A.F., Tome J.P.C., Neves M.G.P.M.S., Tome A.C., Cavaleiro J.A.S., Cunha A., Almeida A. (2014) Influence of external bacterial structures on the efficiency of photodynamic inactivation by a cationic porphyrin. Photochemical & Photobiological Sciences. 13, 4, 680-690. (see details) ISI paper
    Link: http://dx.doi.org/10.1039/c3pp50408e
  48. Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S., Simoes M.M.Q., Smalla K., Cunha A. (2014) Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria. Molecular Ecology. 23, 6, 1392-1404. (see details) ISI paper
    Link: http://dx.doi.org/10.1111/mec.12559
  49. Santos L., Vaz L., Gomes N.C.M., Vaz N., Dias J.M., Cunha A., Almeida A. (2014) Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro. Estuarine Coastal And Shelf Science. 138, 107-120. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.ecss.2013.12.021
  50. Mesquita M.Q., Menezes J.C.J.M.D.S., Pires S.M.G., Neves M.G.P.M.S., Simoes M.M.Q., Tomee A.C., Cavaleiro J.A.S., Cunha A., Daniel-Da-Silva A.L., Almeida A., Faustino M.A.F. (2014) Pyrrolidine-fused chlorin photosensitizer immobilized on solid supports for the photoinactivation of Gram negative bacteria. Dyes And Pigments. 110, 123-133. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.dyepig.2014.04.025
  51. Alves E., Rodrigues J.M.M., Faustino M.A.F., Neves M.G.P.M.S., Cavaleiro J.A.S., Lin Z., Cunha A., Nadais M.H., Tome J.P.C., Almeida A. (2014) A new insight on nanomagnet-porphyrin hybrids for photodynamic inactivation of microorganisms. Dyes And Pigments. 110, 80-88. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.dyepig.2014.05.016
  52. Santos L., Santos E.B.H., Dias J.M., Cunha A., Almeida A. (2014) Photochemical and microbial alterations of DOM spectroscopic properties in the estuarine system Ria de Aveiro. Photochemical & Photobiological Sciences. 13, 8, 1146-1159. (see details) ISI paper
    Link: http://dx.doi.org/10.1039/c4pp00005f
  53. Baptista I., Santos A.L., Pereira C., Santos L., Cunha A., Gomes N.C.M., Almeida A. (2014) Influence of incubation conditions on bacterial production estimates in an estuarine system. Aquatic Ecology. 48, 3, 327-336. (see details) ISI paper
    Link: http://dx.doi.org/10.1007/s10452-014-9487-y
  54. Lopes D., Melo T., Santos N., Rosa L., Alves E., Gomes M.C., Cunha A., Neves M.G.P.M.S., Faustino M.A.F., Domingues M.R.M., Almeida A. (2014) Evaluation of the interplay among the charge of porphyrinic photosensitizers, lipid oxidation and photoinactivation efficiency in Escherichia coli. Journal Of Photochemistry And Photobiology B-biology. 141, 145-153. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.jphotobiol.2014.08.024
  55. Costa L., Esteves A.C., Correia A., Moreirinha C., Delgadillo I., Cunha A., Neves M.G.P.S., Faustino M.A.F., Almeida A. (2014) SDS-PAGE and IR spectroscopy to evaluate modifications in the viral protein profile induced by a cationic porphyrinic photosensitizer. Journal Of Virological Methods. 209, 103-109. (see details) ISI paper
  56. Beirao S., Fernandes S., Coelho J., Faustino M.A.F., Tome J.P.C., Neves M.G.P.M.S., Tome A.C., Almeida A., Cunha A. (2014) Photodynamic Inactivation of Bacterial and Yeast Biofilms With a Cationic Porphyrin. Photochemistry And Photobiology. 90, 6, 1387-1396. (see details) ISI paper
  57. Oliveira V., Gomes N.C.M., Cleary D.F.R., Almeida A., Silva A.M.S., Simoes M.M.Q., Silva H., Cunha A. (2014) Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons. Fems Microbiology Ecology. 90, 3, 647-662. (see details) ISI paper
  58. Silva Y.J., Costa L., Pereira C., Mateus C., Cunha A., Calado R., Gomes N.C.M., Pardo M.A., Hernandez I., Almeida A. (2014) Phage Therapy as an Approach to Prevent Vibrio anguillarum Infections in Fish Larvae Production. Plos One. 9, 12, (see details) ISI paper
  59. Oliveira J.M., Cunha A.S., Almeida A.P., Castilho F.B., Pereira M.J. (2013) Comparison of Methodologies for the Extraction of Bacterial DNA from Mussels-Relevance for Food Safety. Food Analytical Methods. 6, 1, 201-209. (see details) ISI paper
  60. Domingues P.M., Louvado A., Oliveira V., Coelho F.J., Almeida A., Gomes N.C.M., Cunha A. (2013) Selective cultures for the isolation of biosurfactant producing bacteria: comparison of environmental inocula and hydrophobic carbon sources. Preparative Biochemistry & Biotechnology. 43, 3, 237-55. (see details) ISI paper
  61. Gomes M.C., Silva S., Faustino M.A.F., Neves M.G.P.M.S., Almeida A., Cavaleiro J.A.S., Tomé J.P.C., Cunha A. (2013) Cationic galactoporphyrin photosensitisers against UV-B resistant bacteria: oxidation of lipids and proteins by 1O2. Photochemical & Photobiological Sciences. 12, 262–271 (see details) ISI paper
  62. Santos A.L., Oliveira V., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2013) Wavelength Dependence of Biological Damage Induced by UV Radiation on Bacteria. Archives Of Microbiology. 195, 1, 63-74. (see details) ISI paper
    Link: http://link.springer.com/content/pdf/10.1007/s00203-012-0847-5
  63. Costa L., Faustino M.A.F. , Tomé J.P.C., Neves M.G.P.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Almeida A. (2013) Involvement of type I and type II mechanisms on the photoinactivation of non-enveloped DNA and RNA bacteriophages. Journal Of Photochemistry And Photobiology B: Biology. 120, (see details) ISI paper
  64. Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2013) Role of Transition Metals in UV-B Induced Damage to Bacteria. Photochemistry And Photobiology. 89, 3, 640-648. (see details) ISI paper
  65. Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2013) Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate. Photochemical & Photobiological Sciences. 12, 974-986. (see details) ISI paper
  66. Salvador A., Baptista I., Barros A., Gomes N.C.M., Cunha A., Almeida A., Rocha S.M. (2013) Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level in cereal grains and coffee beans?. Plosone. 8, 4, e59338 (see details) ISI paper
  67. Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities. Global Change Biology. 19, 8, 2584-2595. (see details) ISI paper
  68. Alves E., Faustino M. A. F., Tomé J .P.C., Neves M. G. P. S., Tomé A. C., Cavaleiro J. A. S., Cunha A., Newton G., Almeida A. (2013) Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins. Bioorganic & Medicinal Chemistry. 21, 14, 4311-4318. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.bmc.2013.04.065
  69. Alves E., Melo T., Simões C., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S. , Cunha Â., Gomes N.C.M., Domingues P., Domingues M.R.M., Almeida A. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics. Rapid Communications In Mass Spectrometry. 27, 14, 1607-1618. (see details) ISI paper
    Link: http://dx.doi.org/10.1002/rcm.6614
  70. Santos A.L., Moreirinha C., Lopes D., Esteves A.C., Henriques I., Almeida A., Domingues M.R.M., Delgadillo I., Correia A., Cunha A. (2013) Effects of UV Radiation on the Lipids and Proteins of Bacteria Studied by Mid-Infrared Spectroscopy. Environmental Science & Technology. 47, 12, 6306-6315. (see details) ISI paper
    Link: http://pubs.acs.org/doi/abs/10.1021/es400660g
  71. Ribeiro A., Ramalheira E. , Cunha A., Gomes N.C.M., Almeida A. (2013) Incidence of Rotavirus and Adenovirus: Detection by Molecular and mmunological Methods in Human Faeces. Journal Of Pure And Applied Microbiology. 7, 3, (see details) ISI paper
  72. Alves E., Santos N., Melo T., Maciel E., Dória L., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A., Helguero L., Domingues P., Almeida A., Domingues M.R.M. (2013) Photodynamic oxidation of Escherichia coli membrane phospholipids: new insights based on lipidomics. Rapid Communications In Mass Spectrometry. 27, 23, 2717-2728. (see details) ISI paper
    Link: http://dx.doi.org/10.1002/rcm.6739
  73. Gomes M.C., Fernandes R., Cunha A., Tome J.P., Trindade T. (2013) Fluorescence biolabeling using methylated silica nanoparticles containing a lanthanide complex. Journal Of Materials Chemistry B. 1, 40, 5429-5435. (see details) ISI paper
    Link: http://dx.doi.org/10.1039/c3tb20688b
  74. Oliveira J.M., Cunha A.S., Almeida A.P., Castilho F.B., Pereira M.J. (2013) Comparison of Methodologies for the Extraction of Bacterial DNA from Mussels-Relevance for Food Safety. Food Analytical Methods. 2013, 6, -201. (see details) ISI paper
  75. Oliveira J., Castilho F., Cunha A., Pereira M.J. (2013) BIVALVE HARVESTING AND PRODUCTION IN PORTUGAL: AN OVERVIEW. Journal Of Shellfish Research. 32, 3, 911-924. (see details) ISI paper
  76. Cruz A., Oliveira V., Baptista I., Almeida A., Cunha A., Suzuki S., Mendo S. (2012) Effect of tributyltin (TBT) in the metabolic activity of TBT-resistant and sensitive estuarine bacteria. Environmental Toxicology. 27, 1, 11-17. (see details) ISI paper
    Link: http://www.ncbi.nlm.nih.gov/pubmed/20549634
  77. Prata C., Ribeiro A., Cunha A., Gomes N.C.M., Almeida A. (2012) Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particles enumeration as a new approach to determine the efficiency of recovery. Journal Of Environmental Monitoring. 14, 1, 64-70. (see details) ISI paper
  78. Cleary D.F.R., Oliveira V., Gomes N.C.M., Pereira A. , Henriques I., Marques B., Almeida A., Cunha A., Correia A., Lillebø A.I. (2012) Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh. Marine Pollution Bulletin. 64, 2, 263-271. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.marpolbul.2011.11.020
  79. Louvado A., Coelho F.J.R.C., Domingues P., Gomes NCM, Santos A.L., Almeida A., Cunha A . (2012) Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer. Journal Of Microbiology And Biotechnology. 22, 3, 283–291 (see details) ISI paper
  80. Oliveira V., Santos A.L., Aguiar C., Santos L., Salvador A.C., Gomes N.C.M., Silva H., Rocha S.M., Almeida A., Cunha A. (2012) Prokaryotes in salt marsh sediments of Ria de Aveiro: effects of halophyte vegetation on abundance and diversity. Estuarine, Coastal And Shelf Science. 110, 61-68. (see details) ISI paper
    Link: http://dx.doi.org/10.1016/j.ecss.2012.03.013
  81. Pereira J., Carvalho E., Faustino M., Fernandes R., Neves G., Cavaleiro J., Gomes N.C.M., Cunha A., Almeida A., Tomé J. (2012) Phthalocyanine thio-pyridinium derivatives as antibacterial photosensitizers. Photochemistry And Photobiology . 88, 3, 537-547. (see details) ISI paper
  82. Santos A.L., Oliveira V., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2012) Effects of UV-B Radiation on the Structural and Physiological Diversity of Bacterioneuston and Bacterioplankton. Applied And Environmental Microbiology. 78, 6, 2066-2069. (see details) ISI paper
    Link: http://aem.asm.org/content/early/2012/01/06/AEM.06344-11.abstract
  83. Santos A.L., Lopes S., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia, A., Cunha A.L. (2012) The UV Responses of Bacterioneuston and Bacterioplankton Isolates Depend on the Physiological Condition and Involve a Metabolic Shift. Fems Microbiology Ecology. 80, 3, 646-658. (see details) ISI paper
  84. Nogueira V., Lopes I., Rocha-Santos T., Santos A.L., Rasteiro G.M., Antunes F., Gonçalves F., Soares A.M.V.M., Cunha A., Almeida A., Gomes N.C.M., Pereira R. (2012) Impact of organic and inorganic nanomaterials in the soil microbial community structure. Science Of The Total Environment. 424, 344-350. (see details) ISI paper
    Link: http:dx.doi.org/10.1016/j.scitotenv.2012.02.041
  85. Pires A.C.C., Cleary D.F.R., Almeida A., Cunha A., Dealtry S., Mendonca-Hagler L.C.S., Smalla K., Gomes N.C.M. (2012) Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples. Applied And Environmental Microbiology. 78, 16, 5520-5528. (see details) ISI paper
    Link: http://aem.asm.org/content/early/2012/05/30/AEM.00386-12.abstract
  86. Costa L., Faustino A., Faustino M.A.F., Cunha A., Neves M.G.P.M.S., Cunha A., Almeida A. (2012) Photodynamic Inactivation of Mammalian Viruses and Bacteriophages. Viruses. 4, 7, 1034-1074. (see details) ISI paper
  87. Vieira A., Yolanda S., Cunha A., Gomes N.C.M., Ackermann H., Almeida A. (2012) Phage therapy to control multidrug-resistant Pseudomonas aeruginosa skin infections: in vitro and ex vivo experiments. European Journal Of Clinical Microbiology & Infectious Diseases. 31, 11, 3241-3249. (see details) ISI paper
  88. Silva R., Tomé A., Tomé J., Neves M.G., Faustino M.A., Cavaleiro J.A., Oliveira A., Almeida A., Cunha A. (2012) Photo-inactivation of Bacillus endospores: inter-specific variability of inactivation efficiency. Microbiology And Immunology. 56, 10, 692-699. (see details) ISI paper
  89. Costa L., Tomé J.P.C., Neves M.G.P.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Faustino M.A.F., Almeida A. (2012) Susceptibility of non-enveloped DNA- and RNA-type viruses to photodynamic inactivation. Photochemical & Photobiological Sciences. 11, 10, 1520-1523. (see details) ISI paper
  90. Costa D.C.S., Gomes M.C., Faustino M.A.F., Neves M.G.P.M.S., Cunha A., Cavaleiro J.A.S., Almeida A., Tomé J.P.C. (2012) Comparative photodynamic inactivation of antibiotic resistant bacteria by first and second generation cationic photosensitizers. Photochemical & Photobiological Sciences . 11, 12, 1905-1913. (see details) ISI paper
  91. Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2012) Contribution of reactive oxygen species to UV-B-induced damage in bacteria. Journal Of Photochemistry And Photobiology B: Biology. 117, 40-46. (see details) ISI paper
  92. Oliveira J., Castilho F., Cunha A., Pereira M.J. (2012) Bacteriophage therapy as a bacterial control strategy in aquaculture. Aquaculture International. 2012, 20, -879. (see details) ISI paper
  93. da Silva R.N., Tome A.C., Tome J.P.C., Neves M.G.P.M.S., Faustino M.A.F., Cavaleiro J.A.S., Oliveira A., Almeida A., Cunha A. (2012) Photo-inactivation of Bacillus endospores: inter-specific variability of inactivation efficiency. Microbiology And Immunology. 56, 10, 692-699. (see details) ISI paper
  94. Santos A.L., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2011) Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: insights from microcosm studies. Aquatic Sciences - Research Across Boundaries. 73, 1, 63-77. (see details) ISI paper
  95. Santos A.L., Lopes S., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2011) Diversity in UV-Sensitivity and Recovery Potential among Bacterioneuston and Bacterioplankton Isolates. Letters In Applied Microbiology. 52, 4, 360-366. (see details) ISI paper
  96. Pereira C., Salvador S., Arrojado C., Silva Y.J., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy. Journal Of Environmental Monitoring. 13, 4, 1053-1058. (see details) ISI paper
    Link: http://pubs.rsc.org/en/Content/ArticleLanding/2011/EM/c0em00434k
  97. Oliveira J., Cunha A., Castilho F., Romalde J.A.L., Pereira M.J. (2011) Microbial contamination and purification of bivalve shellfish: Crucial aspects in monitoring and future perspectives – A minireview. Food Control. 22, 805-816. (see details) ISI paper
    Link: http://doi:10.1016/j.foodcont.2010.11.032
  98. Baptista I., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation. Aquatic Microbial Ecology. 62, 3, 299-310. (see details) ISI paper
  99. Baptista I., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation. Aquatic Microbial Ecology. 62, 3, 299-310. (see details) ISI paper
  100. Coelho F.J.R.C., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M., Cunha A. (2011) Exploring hydrocarbonoclastic bacterial ­communities in the estuarine surface microlayer. Aquatic Microbial Ecology. 64, 185-195. (see details) ISI paper
    Link: http://www.int-res.com/abstracts/ame/v64/n2/p185-195/
  101. Alves E., Faustino M.A.F., Tome J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2011) Photodynamic antimicrobial chemotherapy in aquaculture: photoinactivation studies of Vibrio fischeri. Plos One. 6, 6, e20970 (see details) ISI paper
    Link: http://dx.doi.org/10.1371/journal.pone.0020970
  102. Santos L.M.P., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2011) Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics. Fems Microbiology Ecology. 77, 3, 636-646. (see details) ISI paper
    Link: http://onlinelibrary.wiley.com/doi/10.1111/j.1574-6941.2011.01147.x/abst...
  103. Costa L., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C, Cavaleiro J.A.S., Faustino M.A.F., Cunha A., Gomes N.C.M., Almeida A. (2011) Evaluation of resistance development and viability recovery by a non-enveloped virus after repeated cycles of aPDT. Antiviral Research. 91, 3, 278-282. (see details) ISI paper
  104. Tavares A., Carvalho C.M.B., Faustino M.A., Neves M.G.P.M.S., Tomé J.P., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Almeida A. (2011) Mechanisms of Photoinactivation of Gram-negative recombinant bioluminescent bacteria by cationic porphyrins. Photochemical & Photobiological Sciences. 10, 10, 1659-1669. (see details) ISI paper
    Link: http://dx.doi.org/10.1039/C1PP05097D
  105. Arrojado C., Tavares C., Pereira C., Tomé J. P. C., Faustino M.A.F., Neves M.G.P., Tomé A.C., Cavaleiro J.A.S., Calado R., Cunha A., Gomes N.C.M., Almeida A. (2011) Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems. Photochemical & Photobiological Sciences. 10, 10, 1691-1700. (see details) ISI paper
  106. Gomes M.C., Woranovicz-Barreira S.M., Tomé J.P.C., Faustino M.A.F., Cavaleiro J.A.S., Gomes N.C.M., Almeida A., Cunha A. (2011) Photodynamic inactivation of Penicillium chrysogenum conidia by cationic porphyrins. Photochemical & Photobiological Sciences. 10, 11, 1735-1743. (see details) ISI paper
    Link: http://dx.doi.org/10.1039/C1PP05174A
  107. Alves E., Costa L., Cunha Â., Faustino M.A.F., Neves M.G.P.M.S., Almeida A. (2011) Bioluminescence and its application in the monitoring of antimicrobial photodynamic therapy. Applied Microbiology And Biotechnology. 92, 6, 1115-1128. (see details) ISI paper
    Link: http://dx.doi.org/10.1007/s00253-011-3639-y
  108. Pereira C., Silva Y., Santos A.L., Gomes N.C.M., Cunha A., Almeida A. (2011) Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival, host specificity and effect on bacterial community structure. Marine Drugs. 9, 11, 2236-2255. (see details) ISI paper
  109. Oliveira J., Cunha A., Castilho F., Romalde J.L., Pereira M.J. (2011) Microbial contamination and purification of bivalve shellfish: Crucial aspects in monitoring and future perspectives - A mini-review. Food Control. Jun, 22, -805. (see details) ISI paper
  110. Costa L., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Almeida A. (2010) Sewage bacteriophage inactivation by cationic porphyrins: influence of light parameters. Photochemical And Photobiological Sciences. 9, 8, 1126-1133. (see details) ISI paper
  111. Tavares A., Carvalho C.M.B., Faustino M.A., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Alves E., Almeida A. (2010) Antimicrobial Photodynamic Therapy: Study of Bacterial Recovery Viability and Potential Development of Resistance after Treatment. Marine Drugs. 8, 1, 91-105. (see details) ISI paper
    Link: http://dx.doi.org/10.3390/md8010091
  112. Carvalho C.M.B., Alves E., Costa L., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Almeida A., Cunha A., Lin Z., Rocha J. (2010) Functional Cationic Nanomagnet-Porphyrin Hybrids for the Photoinactivation of Microorganisms. Acs Nano. 4, 12, 7133–7140 (see details) ISI paper
    Link: http://dx.doi.org/10.1021/nn1026092
  113. Gomes N.C.M., Cleary D.F.R., Pinto F.N., Egas C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2010) Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves. Plos One. 5, 11, (see details) ISI paper
    Link: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0014065
  114. Oliveira V., Santos A.L., Coelho F., Gomes N.C.M., Silva H., Almeida A., Cunha A. (2010) Effects of monospecific banks of salt marsh vegetationon sediment bacterial communities. Microbial Ecology. 60, 1, 167–179 (see details) ISI paper
    Link: http://dx.doi.org/10.1007/s00248-010-9678-6
  115. Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Costa L., Alves E., Oliveira A., Cunha Â., Almeida A. (2009) Antimicrobial photodynamic activity of porphyrin derivatives: potential application on medical and water disinfection. Journal Of Porphyrins & Phthalocyanines. 13, 5, 575-577. (see details) ISI paper
    Link: http://dx.doi.org/10.1142/S1088424609000528
  116. Oliveira A., Almeida A., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A. (2009) Porphyrin derivatives as photosensitizers for the inactivation of Bacillus cereus endospores. Journal Of Applied Microbiology. 106, 1986–1995 (see details) ISI paper
  117. Cunha A., Almeida A. (2009) Inorganic nutrient regulation of bacterioplankton heterotrophic activity in an estuarine system (Ria de Aveiro, Portugal). Hydrobiologia. 628, 1, 81-93. (see details) ISI paper
  118. Alves E., Costa L., Carvalho C. M. B., Tomé J. P. C., Faustino M. A. F., Neves M. G. P. S., Tomé A. C., Cavaleiro J. A. S., Cunha A., Almeida A. (2009) Charge effect on the photoinactivation of Gram-negative and Gram-positive bacteria by cationic porphyrins. Bmc Microbiology . 9, 1, 70 (see details) ISI paper
    Link: http://dx.doi.org/10.1186/1471-2180-9-70
  119. Almeida A., Cunha Â., Gomes N.C.M., Alves E., Costa L., Faustino M.A.F. (2009) Phage therapy and photodynamic therapy: low environmental impact approaches to inactivate microorganisms in fish farming plants. Marine Drugs. 7, 268-313. (see details) ISI paper
    Link: http://dx.doi.org/10.3390/md7030268
  120. Santos A.L., Mendes C., Gomes N.C.M., Henriques I., Correia A., Almeida A., Cunha A. (2009) Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton. Journal Of Plankton Research. 31, 12, 1545-1555. (see details) ISI paper
  121. Lopes A. R., Azeiteiro U., Bessa V.S., Pereira C., Salvador S., Almeida A., Pereira M.J. (2009) Spring pelagic communties of phytoplankton, cyanobacteria, associated heterotrophic bacteria and viruse in an eutrophic shallow temperate lake. Fresenius Environmental Bulletin. 18, 5b, 875-884. (see details) ISI paper
  122. Costa L., Alves E., Carvalho C. M. B., Tomé J. P. C., Faustino M .A. F., Neves M. G. P. S., Tomé A .C., Cavaleiro J .A. S., Cunha A., Almeida A. (2008) Sewage bacteriophage photoinactivation by cationic porphyrins: a study of charge effect. Photochemical & Photobiological Sciences. 7, 4, 415 – 422 (see details) ISI paper
    Link: http://dx.doi.org/10.1039/B712749A
  123. Alves E., Carvalho C. M. B., Tomé J. P. C., Faustino M. A. F., Neves M .G .P. S., Tomé A. C., Cavaleiro J. A. S., Cunha Â., Mendo S., Almeida A. (2008) Photodynamic inactivation of recombinant bioluminescent Escherichia coli by cationic porphyrins under artificial and solar irradiation. Journal Of Industrial Microbiology And Biotechnology. 35, 11, 1447-1454. (see details) ISI paper
    Link: http://dx.doi.org/10.1007/s10295-008-0446-2
  124. Almeida M.A., Cunha M.A., Dias J. (2007) Bacterial productivity distribution during a rainy year in an estuarine system. Microb Ecol. 53, 208–220 (see details) ISI paper
  125. Santos L., Cunha M .A., Silva H., Caçador I., Dias J.M., Almeida M.A . (2007) Influence of salt marsh on the bacterial activity in two estuaries with different hydrodinamic characteristics (Ria de Aveiro and Tagus Estuary). Fems Microbiol Ecol. 60, 3, 429-441. (see details) ISI paper
    Link: http://www.nmec.eu/images/artigos/2007_Influence_Salt_Marsh_Bacterial_Ac...
  126. Almeida A., Cunha MA, Sobral P, Fernandes S, Alcântara F (2007) Copper effects on bacterial activity of estuarine silty sediments. Estuar Coast Shelf S. 73, 3-4, 743-752. (see details) ISI paper
  127. Carvalho C., Gomes A., Fernandes S., Prata A., Almeida M. A., Cunha M.A., Tomé J., Faustino M. A., Neves M. G., Tomé A., Cavaleiro J. A., Lin Z., Rainho J., Rocha J. (2007) Photoinactivation of bacteria in wastewater by porphyrins: Bacterial -galactosidase activity and leucine-uptake as methods to monitor the process. Journal Of Photochemistry And Photobiology B: Biology. 88, 112–118 (see details) ISI paper
  128. Henriques I., Alves A., Tacão M., Almeida A., Cunha A., Correia A. (2006) Genetic diversity and dynamics of free-living bacterial community along an estuarine gradient (Ria de Aveiro, Portugal). Estuarine Coastal And Shelf Science . 68, 139-148. (see details) ISI paper
  129. Cunha A., Almeida A., Ré A., Martins A., Alcântara F. (2006) Perylene toxicity in the estuarine environment of Ria de Aveiro (Portugal). Ecotoxicology. 2, 15, 171-185. (see details) ISI paper
  130. Cunha A., Almeida A. (2006) Influence of an estuarine plume and a marine sewage outfall on the dynamics of coastal bacterioplankton communities. Aquatic Microbial Ecology. 44, 253-262. (see details) ISI paper
  131. Queiroga H., Cunha M.R., Cunha A., Moreira M.H., Quintino V., Rodrigues A.M., Serôdio J., Warwick J. (2006) Foreword. Hydrobiologia. 555, IX-IX. (see details) ISI paper
  132. Almeida M.A., Cunha M.A., Alcântara F. (2005) Relationship of bacterioplankton production with primary production and respiration in a shallow estuarine system (Ria de Aveiro, NW Portugal). Microbiological Research. 3, 160, 315-328. (see details) ISI paper
  133. Cunha M.A., Pedro R., Almeida A., Silva H. (2005) Activity and growth efficiency of heterotrophic bacteria in a salt marsh (Ria de Aveiro, Portugal). Microbiological Research. 3, 160, 279-290. (see details) ISI paper
  134. Henriques I ., Almeida A., Cunha A., Correia A. (2004) Molecular sequence analysis of prokariotic diversity in the micdle and outer sections of the Portuguese estuary Ria de Aveiro. Fems Microbiology Ecology. 49, 269-279. (see details) ISI paper
  135. Yamasaki A., Cunha M.A., Oliveira J.A.B.P., Duarte A.C., Gomes M.T.S.R. (2004) Assessment of copper toxicity using an acoustic wave sensor. Biosensors And Bioelectronics. 19, 1203-1208. (see details) ISI paper
  136. Cunha M.A., Dias J.M., Adelaide M.A., Lopes J.F., Alcântara F. (2003) Fluxes of bacterioplankton between a tidal estuary and the sea: returning to the “outwelling hypothesis". Aquatic Ecology. 37, 45-54. (see details) ISI paper
    Link: http://www.springerlink.com/content/u80403j876858260/fulltext.pdf
  137. Cunha M.A., Almeida M.A., Alcântara F. (2003) Ectoenzymatic activity and glucose heterotrophic metabolism in a shallow estuary (Ria de Aveiro, Portugal): influence of bed sediments and salt marshes. Acta Oecologica. 24, S97-S107. (see details) ISI paper
  138. Almeida M.A., Cunha M.A., Alcântara F. (2002) Seasonal change in the proportion of bacterial and phytoplankton production along a salinity gradient in a shallow estuary. Hydrobiologia. 475/476, 251-262. (see details) ISI paper
  139. Almeida M.A., Cunha M.A., Alcântara F. (2002) Is bacterioplankton production on the Ria de Aveiro influenced by of salt marshes and bed sediment?. Aquatic Ecology. 36, 4, 469-482. (see details) ISI paper
  140. Almeida M. A., Cunha M. A., Alcântara F. (2001) Physiological responses of marine and brackish water bacterial assemblages in a tidal estuary (Ria de Aveiro, Portugal). Aquat Microb Ecol 25:113-125. Aquat Microb Ecol . 25, 113-125. (see details) ISI paper
  141. Almeida M.A., Cunha M.A., Alcântara F. (2001) Factors influencing bacterial production in a shallow estuarine system. Micro Ecol . 3, 42, 416-426. (see details) ISI paper
  142. Almeida M.A., Cunha M.A., Alcântara F. (2001) Loss of estuarine bacteria by viral infection and predation in microcosm conditions. Microb Ecol . 4, 42, 562-571. (see details) ISI paper
  143. Cunha M.A., Almeida M.A., Alcântara F. (2001) Short-time responses of the natural planktonic bacterial community to the changing water properties in an estuarine environment: ectoenzymatic activity, glucose incorporation and biomass production. Microbial Ecology. 1, 41, 69-79. (see details) ISI paper
  144. Cunha M.A., Almeida M.A., Alcântara F. (2000) Patterns of ectoenzymatic and heterotrophic bacterial activities along a salinity gradient in a shallow tidal estuary. Marine Ecology Progress Series. 204, 1-Dec. (see details) ISI paper
  145. Cunha M.A., Almeida M.A., Alcântara F. (1999) Compartments of oxygen consumption in a tidal mesotrophic estuary. Acta Oecologica. 4, 20, 227-235. (see details) ISI paper
  1. Cunha, A., Domingues, P-, Louvado, A., Silva, A., Gomes, N.C.M., Almeida, A., Serafim, L. (2013) Bactérias produtoras de biossurfactantes isoladas da Ria de Aveiro. Magazine Da Sociedade Portuguesa De Microbiologia. Ano 2, 4, (see details)
  2. Almeida A., Alves E., Costa C., Cunha A., Tomé J., Tomé A.C. , Faustino M.A.F. , Neves M.G.P.M., Cavaleiro J.A.S. (2012) Photodynamic inactivation of pathogenic microorganisms in the environment: an efficient, cost-effective and sustainable technology. Microbiologia. Online, 2, (see details)
  3. Cunha M.A., Almeida M.A., Alcântara F. (1999) Variação da actividade bacteriana ao longo de um gradiente de salinidade. Revista De Biologia. 17, 1-4, 261-273. (see details)
  4. Almeida M.A., Cunha M.A., Alcântara F. (1998) Estratificação da Produtividade de Biomassa Bacteriana em Águas Estuarinas (Ria de Aveiro). Revista De Biologia . 16 , 1-4, 227-228. (see details)
  1. Rodrigues A.M., Quintino V., Pinho R., Lourenço A., Lopes M.L., Leão F., Oliveira J., Almeida M.A., Cunha M.A., Pereira R. (2008) Descobrindo a Biodiversidade na Cidade (e-book). Aveiro. Universidade de Aveiro. 13:978-972-789-268-6. (see details)
  2. Queiroga H., Cunha M.R., Cunha A., Moreira M.H., Quintino V., Rodrigues A.M., Serôdio J., Warwick R.M. (eds.) (2006) Developments in Hydrobiology. (EDS.), Marine Biodiversity: Patterns and Processes, Assessment, Threats, Mangement and Conservation. Dordrecht. Springer. 183, (see details)
    Link: http://www.springer.com/west/home/new+%26+forthcoming+titles+%28default%...
  3. Alcântara F., Cunha A., Almeida A. (1996) Microbiologia - Práticas Laboratoriais. Aveiro. 972-789-038-5. (see details)
  1. Cruz, A., Cavaleiro, A.J., Paulo, A., Louvado, A., Alves, M., Almeida, A., Cunha, A. (2017) Microbial Remediation of Organometals and Oil Hydrocarbons in the Marine Environment. In: Naik, M.M., Dubey, S.K. . (EDS.), Marine Pollution and Microbial Remediation. Springer Singapore. 41-66. 978-981-10-1044-6. (see details)
  2. Almeida A., Cunha A., Faustino A., Tomé A., Neves G. (2010) Porphyrins as antimicrobial photosensitising agents. . In: Photodynamic inactivation of microbial pathogens. Medical and environmental applications. (see details)
  3. Cunha A., Almeida A., Coelho F.J.R.C., Gomes N.C.M., Oliveira V., Santos A.L. (2010) Bacterial Extracellular Enzymatic Activity in Globally Changing Aquatic Ecosystems. In: Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology. Badajoz. Formatex. 2, (see details)
  4. Santos A.L., Baptista I., Oliveira V., Henriques I, Gomes N.C.M., Almeida A., Correia A., Cunha A. (2010) Oxidative stress induced by photochemical reactions occuring at the surface microlayer. In: Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products. Singapore. World Scientific Publishing. 978-981-4322-10-2. (see details)
  5. F.J.R.C. Coelho, S. Sousa, L. Santos, A. L. Santos, A. Almeida, N. C. M. Gomes, Â. Cunha (2010) PAH Degrading Bacteria in an Estuarine System. In: Studies on Environmental Chemistry-Biological Responses to Contaminants. Tokyo. © by TERRAPUB. (see details)
    Link: http://www.terrapub.co.jp/onlineproceedings/ec/03/index.html
  6. A. Louvado , A. L. Santos , F. Coelho, S. Sousa, A. Moreira, F. Gomes, A. Almeida, N. C. M. Gomes, Â. Cunha (2010) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. In: Interdisciplinary Studies on Environmental Chemistry-Biological Responses to Contaminants. Tokyo. © by TERRAPUB. (see details)
    Link: http://www.terrapub.co.jp/onlineproceedings/ec/03/pdf/BR_03089.pdf
  7. Oliveira A., Almeida A., Carvalho C., Tomé J., Faustino M.A., Neves M.G., Tomé A.C., Cavaleiro J., Cunha A. (2009) Assessment of the performance of porphyrin derivatives as photosensitizers for the inactivation of bacterial endospores. In: Current Research Topics in Applied Microbiology and Microbial Biotechnology. Singapore. World Scientific Publishing Co. (see details)
  8. Costa L., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Lin Z., Rainho J.P., Rocha J., Cunha A., Almeida A. (2007) Sewage bacteriophage photoinactivation by immobilized porphyrins in solid matrixes. In: Current Research Topics in Applied Microbiology and Microbial Biotechnology. Singapore. World Scientific Publishing Co. (see details)
  9. Almeida A., Cunha A., Santos L., Salvador S., Gomes A. (2007) Evaluation of the impact of two aquaculture systems on bacterial communities of the estuarine system Ria de Aveiro. In: Current Research Topics in Applied Microbiology and Microbial Biotechnology. Singapore. World Scientific Publishing Co. (see details)
  10. Cunha A., Almeida A., Ré A., Martins A., Alcântara F. (2006) Perylene toxicity in the estuarine environment of Ria de Aveiro (Portugal). In: Modern Multidisciplinary Applied Microbiology - Exploiting Microbes and their Interactions. Weinheim. Wiley-VCH Verlag GmbH & Co. KGaA. ISBN-13: 978-3-527-31611-3. (see details)
  1. Marques, André Eduardo Baptista de Oliveira (2015) Estudo da variação da abundância e diversidade de procariotas em sedimentos subsuperficiais marinhos. MSc Thesis. [supervisor] (see details)
  2. Pereira, Ângela Maria da Costa (2015) Inactivation of Pseudomonas spp. biofilms with natural and synthetic photossensitizers. MSc Thesis. [supervisor] (see details)
  3. Rocha, D.M. (2014) Inativação fotodinâmica de microrganismos com ftalocianinas multicarregadas . MSc Thesis. (see details)
  4. Couceiro, J. (2014) Inativação fotodinâmica de endósporos bacterianos: aplicação de alta pressão como coadjuvante na ligação do fotossensibilizador. . MSc Thesis. (see details)
  5. Santos, L. (2014) Estudos de possíveis aplicabilidades de extratos de duas plantas invasoras em Portugal: o Pittosporum undulatum e Eryngium pandanifolium . MSc Thesis. (see details)
  6. Araújo, V. (2014) O efeito do stresse frio na virulência de Listeria monocytogenes . MSc Thesis. (see details)
  7. Coelho F.J.R.C (2013) Oil hydrocarbon-bacteria interactions in coastal environments. PhD Thesis. (see details)
  8. Ferreira M.R.S. (2013) Efeito da taxa sde pressurização na inativação de Listeria innocua. MSc Thesis. (see details)
  9. Santos L. (2013) Hydrological and photochemical influence on dynamics of estuarine bacteria. PhD Thesis. [co-supervisor] (see details)
  10. Pereira S.M.L. (2013) Efeito da temperatura e pH na inativação de Listeria por alta pressão. MSc Thesis. (see details)
  11. Santos, A.L.M. (2013) Responses to UV-induced stress in bacterioneuston communities: mechanisms and ecological implications. PhD Thesis. (see details)
  12. Ferreira, M. (2013) Efeito da taxa de compressão na inactivação de microrganismos por tecnologia de alta pressão. MSc Thesis. (see details)
  13. Pereira, S. (2013) Efeito da temperatura na cinética de inativação de Listeria innocua por alta pressão. MSc Thesis. (see details)
  14. Beirão, S. (2012) Inactivação Fotodinâmica de Biofilmes Bacterianos. MSc Thesis. (see details)
  15. Fernandes, S. (2012) Porfirinas expandidas: avaliação da eficiência em aPDT. MSc Thesis. (see details)
  16. Lykoholat, V. (2012) Genes de proteorrodopsinas em bacterioneuston e bacterioplâncton da Ria de Aveiro . MSc Thesis. (see details)
  17. Silva, A.P. (2012) Efeito do meio de cultura na produção de ramnolípidos bacterianos. MSc Thesis. (see details)
  18. Oliveira, J. (2012) Salubridade Microbiológica dos Moluscos Bivalves – Relevância na Segurança Alimentar / Microbiological quality of bivalves - relevance to food safety. PhD Thesis. [co-supervisor] (see details)
  19. Reis, A. (2011) Desenvolvimento de resistência à inactivação por alta pressão em bactérias. MSc Thesis. (see details)
  20. Medeiros, J. (2011) Optimal sample size for assessing bacterioneuston structural diversity. MSc Thesis. (see details)
  21. Domingues, P.M. (2011) Produção de biossurfactantes em bactérias hidrocarbonoclásticas. MSc Thesis. (see details)
  22. Silva, C. (2011) Avaliação Bacteriológica de Sangue do Cordão Umbilical. MSc Thesis. (see details)
  23. Gomes, D. (2011) . Detecção do Ag HLA-B27 – Métodos: Citometria de Fluxo e PCR-GenoQuick . MSc Thesis. (see details)
  24. Martins, C. (2011) Polímeros funcionais como agentes microbianos para desinfeção oral. MSc Thesis. (see details)
  25. Louvado, A. (2010) António Louvado. MSc Thesis. (see details)
  26. Gomes, C. (2010) Glycosilated porphyrines as photosensitizers for the inactivation of microorganisms . MSc Thesis. (see details)
  27. Almeida, P.R. (2010) Estudo da incidência de septicemias em doentes oncológicos e comparação do resultado das respectivas hemoculturas com a determinação da procalcitonina . MSc Thesis. (see details)
  28. Rodrigues S. (2009) Microbial warfare: the role of valinomycin and cereulide. MSc Thesis. (see details)
    Link: http://hdl.handle.net/10773/4555
  29. Branco S. (2009) Aplicação das técnicas de FISH e PCR no diagnóstico da leucemia mieloide crónica. MSc Thesis. (see details)
  30. Fernandes S. (2009) Caracterização microbiológica de amostras de solos potencialmente contaminados com resíduos radioactivos. MSc Thesis. (see details)
  31. Branco, S. (2009) Aplicação das técnicas de FISH e PCR no diagnóstico da leucemia mieloide crónica (Co-orientação). MSc Thesis. (see details)
  32. Osório N. (2009) Importância das bactérias fixadoras de azoto na rizosfera de halófitas. MSc Thesis. (see details)
    Link: http://ria.ua.pt/handle/10773/8924
  33. Santos, A.L.M. (2008) Impacto da radiação UV sobre a integridade do DNA, metabolismo heterotrófico composição das comunidades bacterioneustónicas (MSc Thesis). MSc Thesis. (see details)
  34. Oliveria, A.A. (2008) Aplicação de derivados porfirínicos como fotosensibilizadores na inactivação de endosporos bacterianos (MSc Thesis). (see details)
  35. Coelho F.J.R., (2008) Bacterioneuston da Ria de Aveiro: abundância, actividade e degradação de hidrocarbonetos aromáticos policíclicos. MSc Thesis. (see details)
    Link: http://ria.ua.pt/handle/10773/10854
  36. Oliveira A. (2008) Aplicação de derivados porfirínicos como fotosensibilizadores na inactivação de endosporos bacterianos. MSc Thesis. (see details)
  37. Oliveira V. (2008) Diversidade microbiana em rizosferas de plantas de sapal. MSc Thesis. (see details)
  38. Sousa, I. (2007) Descrição e caracterização de um microssatélite no gene IFF8 de Candida albicans. (MSc Thesis). MSc Thesis. (see details)
  39. Bessa V.S.S. (2007) Dinâmica do Bacterioplâncton da Lagoa da Vela – Influência de Factores Bióticos e Abióticos. MSc Thesis. (see details)
  40. Cunha A. (2001) Bacterioplâncton de Ria de Aveiro: actividade ectoenzimática e metabolismo de monómeros. PhD Thesis. (see details)
    Link: http://ria.ua.pt/handle/10773/924
  41. Cunha A. (1993) Estudo da microflora bacteriana das águas do Canal de Mira (Ria de Aveiro). Aveiro. Departamento de Biologia - Universidade de Aveiro. (see details)
  42. Cunha A. (1993) Resposta de uma comunidade bacteriana estuarina à adição de matéria orgânica na presença de mercúrio: uma experiência de microcosmos. Aveiro. Departamento de Biologia - Universidade de Aveiro. (see details)
  43. Oliveira, V.J. Mediação microbiana na recuperação de sapais. PhD Thesis. (see details)
  1. Almeida A, Bartolomeu M, Rocha S, Cunha Â, Neves MGPMS, Faustino MAF (2017) Effect of photodynamic therapy on the virulence factors of Staphylococcus aureus. (see details)
  2. Fernández, L., Borzecka, W., Lin, Z., Schneider, R.J., Esteves, V.I. , Cunha, A., Tomé, J.P.C. (2016) Cationic magnetic nanoparticles functionalized with photosensitizers for photodynamic inactivation of microorganisms. (see details)
  3. Cunha, A. (2016) Dinâmica do bacterioplâncton da ria de Aveiro. 49-57. (see details)
  4. Cunha, A. (2016) Microbial biofilms: going sessile to succeed. (see details)
  5. Fernández, L., Lin, Z., Almeida, A., Schneider, R.J., Esteves, V.I. , Cunha, A., Tomé, J.P.C. (2016) Photodynamic inactivation of E. coli using magnetic nanoparticles containing glycosylated porphyrins. . (see details)
  6. Domingues, P.M., Almeida, A., Serafim, L.S., Gomes, N.C.M., Cunha, A. (2016) Response of bacterial communities from deep-sea active and inactive mud volcanoes to the presence of crude oil in nitrate-reduction conditions. . (see details)
  7. Gomes, M.C., Cunha, A., Tomé, J.P.C., Trindade, T., Zheng, G. (2016) Carbohydrate coated gold nanoparticles as SERS probes for confocal raman microscopy of cancer cells. . (see details)
  8. Silva, R.N., Cunha, A., Almeida, A., Tomé, A.C. (2016) Photodynamic inactivation of gram positive and gram negative bacteria with phthalocyanines bearing sulfonamide units. (see details)
  9. Silva, Y. J., Pereira, C., Costa, L., Santos, L., Cunha, A., Gomes, N.C.M., Calado, R., Almeida, A. (2015) Phage therapy as an approach to prevent Aeromonas salmonicida infections in juvenile sole fish. (see details)
  10. Alves, E., Faustino, M.A.F., Tomé, J.P.C., Tomé, A.C., Neves, M.G.P.M.S., Cavaleiro, J.A.S., Cunha, A., Domingues, M.R.M., Almeida, A. (2015) Seven years of research in environmental antimicrobial PDI at the University of Aveiro: contributions and challenges. . (see details)
  11. Couceiro, J., Martins, C., Neves, M.G.P.M.S., Faustino, M.A.F., Saraiva, J.M., Almeida, A., Cunha, A. (2015) Light-induced inactivation of bacterial endospores: high-pressure enhances photosensitizer binding and improves inactivation efficiency. (see details)
  12. Neves, M.G.P.M.S., Alves, E., Mesquita, M., Rodrigues, J.M.M., Almeida, A., Cunha, A., Faustino, M.A.F. (2015) Development of photoactive materials for environmental applications. . (see details)
  13. Santos, L.M.P., Pinto, A., Filipe, O., Cunha, A., Santos, E.B.H., Almeida, (2015) A. Insights on the optical properties of estuarine DOM – and biological influences. (see details)
  14. Bartolomeu, M.M., Rocha, S., Cunha, A., Neves, M.G.P.M.S., Faustino, M.A.F., Almeida, A. (2015) Effect of photodynamic therapy on the virulence factors of Staphylococcus aureus. (see details)
  15. Bonifácio, D., Couceiro, J., Fernandes, A.A., Faustino, M.A.F., Almeida, A., Cunha, A. (2015) Interactive effect of visible light and an extract of Curcuma longa on Listeria biofilms. (see details)
  16. Castro, K.A.D.F., Moura, N.M.M., Fernandes, A., Faustino, M.A.F., Simões, M.M.Q., Cavaleiro, J.A.S., Nakagaki, S., Almeida, A., Cunha, A., Silvestre, A.J.D., Freire, C.S.R., Pinto, R.J.B., Neves, M.G.P.M.S 1, M. Graça P.M.S. Neves (2015) Study of inactivation of Listeria monocytogenes with porphyrins and porphyrin-chitosan materials. (see details)
  17. Nunes-da-Silva, R.S.O., Cunha, A., Almeida, A., Tomé, A.C. (2015) New phthalocyanines bearing sulfonamide units. (see details)
  18. Reis, S., Cunha, A., Neves, M.G.P.M.S., Fontes, M., Faustino, M.A.F., Almeida, A. (2015) Photodynamic inactivation of microorganisms in wastewaters. (see details)
  19. Rocha, D., Venkatramaiah, N., Gomes, M.C., Faustino, M.A.F., Almeida, A., Paz, F., Cunha, A., Tomé, J.P.C. (2015) Photodynamic inactivation of Escherichia coli with quaternized amphiphilic water-soluble Zn(II)phthalocyanines. (see details)
  20. Santos, L., E.B.H. Santos, Cunha, A., Almeida, A. (2015) Photochemical and microbial alterations of DOM spectroscopic properties in the estuarine system Ria de Aveiro. (see details)
  21. Silva, Y., Pereira, C., Costa, L., Santos, L., Cunha, A., Gomes, N.C.M., Calado, R., Almeida, A. (2015) Phage therapy as an approach to prevent Aeromonas salmonicida infections in juvenile sole fish. (see details)
  22. Tedim, J., Bastos, A.C., Domingues, E.M., Yasakau, K., Salak, A.N., Cunha, A., Almeida, A., Zheludkevich, M.L. Ferreira, M.G.S. (2015) Exploring the versatility of layered double hydroxides conversion films towards different applications. (see details)
  23. Bartolomeu, M., Rocha, S., Cunha, A., Neves, M.G.P.M.S., Faustino, M.A.F., Almeida, A. (2015) Photodynamic inactivation of Staphylococcus aureus: effects on virulence factors. (see details)
  24. Nunes-da-Silva, R.S.O., Cunha, A., Almeida, A., Tomé, A.C. (2015) New phthalocyanines bearing sulfonamide units. (see details)
  25. Louvado, A., Almeida, A., Simões, M.M. Q., Gomes, N.C.M., Cunha, A. (2015) Biodegradation of PAHs and biosurfactant production in deep sea bacteria. (see details)
  26. Sena, C., Azevedo, M.R., Ribeiro, S., Gomes, N., Coelho, F., Marques, A., Cunha, A., Almeida, A., Pinheiro, L.M. & Expedition 351 Scientists. (2015) Water-rock interactions and geomicrobiology in a sedimentary basin that records large volcanic eruptions – IODP Expedition 351. (see details)
  27. Cunha, A. (2015) Photodynamic inactivation of resistant bacterial forms: endospores and biofilms. (see details)
  28. Inácio, R.S., Santos, D.I., Gomes, P., Loureiro, M., Carvalho, F., Da Silva, J.L., Cunha, A., Almeida, A., Delgadillo, I., Saraiva, J. (2015) Microbial and sensorial shelf-life extension of sliced cooked ham by high pressure pasteurization. (see details)
  29. Cunha, A. (2015) UV effects on estuarine bacterioneuston. (see details)
  30. Alves E., Melo T., Santos N., Simões C., Maciel E., Dória M.L., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Helguero L., Domingues P., Domingues M.R.M., Almeida A. (2014) Photodynamic oxidation of bacterial membrane phospholipids: a new insight provided by lipidomics. (see details)
    Link: http://uaonline.ua.pt/pub/detail.asp?c=38266&lg=en
  31. Alves E., Neves M.G.P.M.S., Cunha A., Almeida A., Faustino M.A.F. (2014) Porphyrins In the Photodynamic Inactivation of Microorganisms Beyond the Medical Scope . (see details)
    Link: http://www.photobiology.org/UserFiles/File/ASP2014%20FINAL%20Online_Prog...
  32. Almeida A., Alves E., Moreirinha C., Faustino A., Cunha C., Delgadillo I., Neves M.G.P.M.S. (2014) Overall Biochemical Changes in Bacteria Photosensitized with Cationic Porphyrins studied by Infrared Spectroscopy. (see details)
    Link: http://www.icpp-spp.org/general/ICPP-8-program_2014.pdf
  33. Neves M.G.P.M.S., Alves E., Costa L., Rodrigues J.M.M., Carvalho C.M.B., Almeida A., Cunha C., Faustino M.A.F., Tomé J.P.C. (2014) New Photoactive Nanomaterials for Environmental Applications. (see details)
    Link: http://www.icpp-spp.org/general/ICPP-8-program_2014.pdf
  34. Tedim, J., Maia, F., Kuznetsova, A., Silva, A.P., Martins, R., Cunha, A., Almeida, A., Loureiro, S., Freitas, R., Soares, A.M.V., Zheludkevich, M.L., Ferreira, M.G.S. (2014) Use of nanostructured materials in marine corrosion protection: an integrated approach. (see details)
  35. Guerra, C., Pedrosa-de-Jesus, H., Correia, A., Cunha, A., Almeida, A., Watts, M. (2014) Promoting academic development trough situated critical reflection. . (see details)
  36. Mesquita, M., Menezes, J.C.M.D.S, Faustino, M.A.F., Neves, M.G.P.M.S., Tomé, A.C., Cunha, A., Almeida, A., Hackbarth, S., Röder, B., Cavaleiro, J.A.S. (2014) Photodynamic inactivation of bioluminescent Escherichia coli by cationic pyrrolidine-fused chlorins and isobacteriochlorins. (see details)
  37. Pedrosa-de-Jesus, H., Watts, M., Pedrosa, J., Almeida, A., Cunha, A., Guerra, C., (2014) Self-reflection on the Strengths, Weaknesses and Possibilities in the Academic Development of University Teachers. (see details)
  38. | Neves, M.G.P.M.S., Alves, E., Costa, L., Santos, C.I.M., Tomé, J.P.C., Faustino, M.A.F., Almeida, A., Cunha, A. (2014) New photoactive nanomaterials for environmental and sensing applications. (see details)
  39. Almeida, J., Alves, E., Neves, M.J.P.M.S., Tomé, J.P.C., Tomé, A.C., Cunha, A., Almeida, A., Faustino, M.A.F. (2014) Photodynamic inactivation of bacteria by porphyrins: influence of light parameters and antibiotics in its efficiency. (see details)
  40. Baptista, I., Queirós, R.P., Cunha, A., Rocha, S.M., Saraiva, J.A., Almeida, A. (2014) Evaluation of resistance development and viability recovery by toxigenic and non-toxigenic Staphylococcus aureus strains after repeated cycles of high hydrostatic pressure. . (see details)
  41. Beirão, S., Fernandes, S., Coelho, J., Almeida, A., Neves, M.G.P.M.S., Tomé, A.C., Faustino, M.A.F., Tomé, J., Cunha, A. (2014) Inactivation of microbial biofilms by visible light witha porphyrinic photosensitizer. . (see details)
  42. da Silva R. .N., Tomé A., Tomé J., Neves M., Faustino M., Cavaleiro J., Oliveira A., Almeida A., Cunha Â. (2014) Photoinactivation of Bacillus endospores: inter-specific variability of the inactivation efficiency. (see details)
  43. Fernandez, L., Esteves, V.I., Cunha, A., Schneider, R.J., Tomé, J.P.C. (2014) Degradation of pharmaceuticals in environmental waters: combined action of bacteria, light and photosensitizers. XX Encontro Luso-Galego de Química, 26-28 November 2014, . (see details)
  44. Pereira, C., Santos, L., Silva, A.P., Cunha, A., Romalde, J.L., Nunes, M.L., Almeida, A. (2014) Seasonal variation of bacterial communities in shellfish harvesting waters: a preliminary study before applying phage therapy. . (see details)
  45. Ramalho SP, Cunha MR, Lins L, Pape E, Cordova EA, Lampadariou N, Vanreusel A (2014) Bottom trawling impacts on the deep-sea benthic communities from the SW Portuguese continental slope (NE Atlantic). (see details)
  46. Rocha, D., Venkatramaiah, N., Gomes, M.C.P., Almeida, A., Paz, F.A.A., Cunha, A., Tomé, J.P.C. (2014) Water Soluble zinc(II)phthalocyanines with multi-charged substituents for the photodynamic inactivation of microorganisms. . (see details)
  47. Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Almeida A., Cunha Â., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Ocean acidification and oil contamination have a synergistic effect on microbial community composition. Abstract Book: 2231. (see details)
  48. Santos L., Batista I., Santos A.L., Coelho F.J.R.C., Gomes, N., Dias, J.M., Cunha, Â., Almeida, A. (2013) Heterotrophic activity in the surface microlayer of an estuarine system (Ria de Aveiro). Abstract Book: 2265. (see details)
  49. Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A,, Lillebø A.I., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Synergistic effects of global climate change and oil pollution on estuarine sediment bacterial communities. Abstract Book: 2005. (see details)
  50. Pereira C, Baptista I, Silva AP, Cunha A, Gomes NCM, Romalde JL, Nunes ML, Almeida A (2013) Seasonal variation of bacterial community composition of bivalve molluscs harvesting waters. (see details)
  51. Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S, Simões M.M.Q., Smalla K., Cunha A. (2013) Characterization of endophytic community structure and functional diversity associated with two salt marshes plants (Halimione portulacoides and Sarcocornia perennis). (see details)
  52. Silva A.P., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2013) Effect of culture medium in the production of bacterial rhamnolipids. (see details)
  53. Silva A.P., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2013) Effect of culture medium in the production of bacterial rhamnolipids. (see details)
  54. Alves E., Faustino M.A.F., Tomé J.P.C., Neves M.G. P. M. S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2013) Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins. (see details)
    Link: http://liege2013.photobiology.eu/programme
  55. Alves E., Melo T., Simões C., Faustino M.A.F., Tomé J.P.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Domingues P., Domingues M.R.M., Almeida A., Neves M.G.P.M.S. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics. (see details)
    Link: http://liege2013.photobiology.eu/programme
  56. Silva YJ, Pereira C, Costa L, Cunha A, Gomes NCM, Almeida A (2013) Influence of organic matter content in the inactivation of the fish pathogenic Aeromonas salmonicida by a new isolated bacteriophage. (see details)
  57. Silva YJ, Costa L, Pereira C, Calado R, Gomes NCM, Cunha A, Almeida A (2013) Application of a rapid method for bacteria detection, in order to evaluate the effect of different environmental variables in the efficiency of phage therapy in fish farms. (see details)
  58. Baptista I., Cunha A., Saraiva J., Rocha S.M., Almeida A. (2013) High Pressure Processing in the Inactivation of Enterotoxic Bacterial Strains. (see details)
  59. Baptista I., Salvador A., Petronilho S., Stein P., Ferreira J., Costa V., Gomes N., Cunha A., Almeida A., Rocha S.R. (2013) Food Flow Extract - Flow Extraction of Microbiological Contaminants. (see details)
  60. Santos L, Vaz L, Gomes NMC, Vaz N, Dias JM, Cunha A, Almeida A (2013) Impact of freshwater inflow on bacterial abundance and activity in the estuarine sytem Ria de Aveiro. (see details)
    Link: http://www.same13.eu/images/dates/same13%20abstract%20book.pdf
  61. Santos L., Gomes N.G.M., Santos E.B.H. , Dias J.M., Cunha A., Almeida A. (2013) Photochemical and microbial alterations of DOM spectroscopic properties in the estuarine system Ria de Aveiro. (see details)
  62. Gomes M.C., Silva S. , Faustino M.A.F., Neves M.G.P.M.S. , Almeida A., Cavaleiro J., Tomé J.P.C., CunhaA. (2013) Cationic galactoporphyrin photosensitisers against UV-B resistant bacteria: oxidation of lipids and proteins by 1O2. (see details)
  63. Pinto A.G.M., Cunha A., Gomes NMC, Santos E.B.H., Almeida A. (2013) Effect of solar irradiation on heterotrophic bacteria in the marine environment. (see details)
    Link: http://www.same13.eu/images/dates/same13%20abstract%20book.pdf
  64. Beirão S., Fernandes S., Tomé J.P.C., Neves M.G.P.M.S., Almeida A., Cunha A., Faustino A. (2013) Photodynamic inactivation of bacterial and yeast biofilms with a cationic porphyrin. (see details)
  65. Almeida A., Mateus L., Silva Y., Costa L., Pereira P. , Cunha A. (2013) Efficacy of a phage cocktail against Vibrio parahemolyticus infection in aquaculture. (see details)
  66. Almeida A., Pereira M., Amparo F., Tomé J., Neves G., Tomé A., Cavaleiro J., Cunha Â. (2013) Influence of external bacterial structures in the efficiency of photodynamic inactivation. (see details)
  67. Carla Pereira, Yolanda J. Silva, Ângela Cunha, Jesus L. Romalde, Maria L. Nunes, Adelaide Almeida (2013) SEASONAL VARIATION OF SANITARY QUALITY OF BIVALVE HARVESTING WATERS: PRELIMINARY STUDY BEFORE APPLYING PHAGE THERAPY. (see details)
  68. Carla Pereira, Yolanda J. Silva, Liliana Costa, Frederico Azevedo, Ângela Cunha, Adelaide Almeida (2013) Bacteriophages with potential to treat furunculosis in marine fish: survival, host specificity and host phage dynamics. (see details)
  69. Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Calado R., Cleary D.R.F., Gomes N.C.M. (2013) Synergistic impact of global climate change and oil pollution on estuarine sediment communities simulated in laboratory microcosms. (see details)
  70. Inês Baptista, Ana Luísa Santos, Carla Pereira, Newton C.M.Gomes, Ângela Cunha, Adelaide Almeida (2013) CAN INCUBATION CONDITIONS AFFECT BACTERIOPLANKTON BIOMASS PRODUCTIVITY ESTIMATES. (see details)
  71. Inês Baptista, Rui Queirós, Ângela Cunha, Jorge Saraiva, Sílvia M. Rocha, Adelaide Almeida (2013) HIGH PRESSURE PROCESSING IN THE INACTIVATION OF ENTEROTOXIC STAPHYLOCOCCUS AUREUS. (see details)
  72. Lília Mateus, Carla Pereira, Yolanda J. Silva, Liliana Costa, Ângela Cunha, Adelaide Almeida (2013) INACTIVATION OF AQUACULTURE VIBRIO PARAHEMOLYTICUS BY THE USE OF PHAGE COCKTAILS. (see details)
  73. Oliveira V., Gomes N.C.M., Almeida A., Ezequiel J., Serôdio J., Silva A.M.S. , Simões M.M.Q. , Silva H., Cunha A. (2013) Evaluation of plant-microbe interaction in 2-methylnaphthalene contaminated sediments. (see details)
  74. Pedrosa-de-Jesus M.H., Correia A., Mendo S., Cunha A., Almeida A., Guerra C., Lopes B., Moreira A., Pedrosa J. (2013) INOVAÇÃO NO ENSINO SUPERIOR. UM ESTUDO SOBRE O DESENVOLVIMENTO ACADÉMICO. (see details)
    Link: http://www.aforges.org/conferencia3/docs_documentos/SESSOES%20PARALELAS/...
  75. Silva A.P., Oliveira V., Sousa F., Gomes N.C.M., Almeida A., Serafim L., Cunha A. (2013) Effect of salinity in the production of rhamnolipids by Pseudomonas strains isolated from Ria de Aveiro. (see details)
  76. Santos L., Vaz L., Gomes N.C.M., Vaz N., Dias J.M., Cunha A., Almeida A. (2013) Impact Freshwater Inflow on Bacterial Abundance and Activity in the Estuarine System Ria de Aveiro. (see details)
  77. Coelho F.J.R.C., Rocha R. J.M., Pires A.C.C., Castanheira J., Costa R., Lillebø A.I., Almeida A., Cunha Â., Calado R., Cleary D., Gomes N.C.M. (2012) Marine experimental life support system for microbial communities. (see details)
  78. Silva Y.J., Carla Pereira, Ângela Cunha, Newton C.M. Gomes, Adelaide Almeida (2012) Evaluating seasonal dynamics of bacterial communities in a marine fish aquaculture: a preliminary study before applying phage therapy. (see details)
  79. Costa L., Tomé J., Neves M.G., Tomé A. C., Cavaleiro J.A.S., Cunha A., Faustino M.A.F., Almeida A. (2012) Susceptibility of non-enveloped DNA- and RNA–type viruses to photodynamic inactivation. (see details)
    Link: Caderno de resumos, p.573
  80. Almeida J,, Tomé J, , Tomé A, , Neves G, , Cavaleiro J, , Cunha A, , Faustino A, Costa L., Almeida J (2012) Photoinactivation of multidrug-resistant bacteria in hospital wastewaters: influence of antibiotics in its effectiveness. (see details)
  81. Silva Y.J., Manco S., Costa R., Rodrigues V., Ferreira H., Pousão-Ferreira P., Almeida M.A., Cunha A., Calado R., Gomes N.C.M., Dias J. (2012) Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata. (see details)
  82. Silva Y.J., Calado R., Gomes N.C.M., Cunha A., Almeida M.A. (2012) Application of a rapid method for bacteria detection, in order to evaluate the effect of different cultural conditions on the efficacy of phage therapy as an alternative to inactivate pathogenic bacteria in fish farms. (see details)
  83. Cunha, A., Almeida, A., Nunes da Silva, R., Tomé, J.P.C, Neves, M.G.PM.S., Faustino, M.A.F., Cavaleiro, J.A.S., Oliveira, A., Tomé, A.C. (2012) Photoinactivation of Bacillus endospores: inactivation efficiency varies significantly among species. (see details)
  84. Cunha, A. (2012) The antimicrobial photodynamic effect prospects on environmental applications. (see details)
  85. Cunha, A (2012) Photodynamic inactivation of resistant microbial structures: bacterial endospores, fungal conidia and microbial biofilms. (see details)
  86. Almeida A, Pereira C, Silva YJ, Cunha A, Gomes NCM (2012) Preliminary studies of the applicability of phage therapy with new isolated bacteriophages in marine fish aquaculture. (see details)
  87. Oliveira, J., Castilho, F., Cunha, A., Pereira, M. J. (2012) Development of the Portuguese bivalve production: an overview. (see details)
  88. Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria De Aveiro. (see details)
  89. Alves E., Arrojado C., Pereira C., Carvalho C., Faustino M., Tomé J., Neves M., Tomé A., Cavaleiro J., Cunha A., Gomes N., Almeida A. (2011) Terapia fotodinâmica antimicrobiana como alternativa aos antibióticos para inactivar bactérias patogénicas em pisciculturas. (see details)
    Link: http://la.cesam.ua.pt/encontros_cientificos/2011/LivroResumosJornadasRia...
  90. Almeida A., Cunha A. , Gomes N.C.M., Santos L., Mendes C., Pereira C. (2011) Impacto do Virioplâncton sobre a Comunidade Bacteriana da Ria de Aveiro. (see details)
  91. Santos L., Gomes N C M., Cunha A., Almeida A. (2011) Variação da abundância e produtividade bacteriana na Ria de Aveiro durante um período de 10 anos (1996-2007). (see details)
  92. Santos L., Santos A. L., Coelho F., Gomes N. C. M., Cunha A., Dias J. M. , Almeida A. (2011) Avaliação da hidrodinâmica estuarina na actividade bacteriana na microcamada superficial. (see details)
  93. Pereira C., Silva Y. J., Cunha A., Gomes N.C.M., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em Pisciculturas. (see details)
    Link: http://2workshopbiotecnologiaua.weebly.com/posters.html
  94. Gomes M.C., Carvalho E.F.A., Carvalho C.M.B., Alves E., Faustino M.A.F., Neves M.G.P.M.S. , Tomé A.C., Cavaleiro J.A.S., Almeida M.A., Cunha M.A., Lin Z., Rocha J., Tomé J.P.C. (2011) Porphyrins and phthalocyanines for wastewater treatment. (see details)
    Link: http://www.esoc2011.com/default.aspx
  95. Alves E., Costa L., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F. , Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Almeida A., Cunha Â., Lin Z. (2011) Photodynamic inactivation of bacteria and bacteriophages with new cationic nanomagnet-porphyrin hybrids. (see details)
    Link: http://www.esp-photobiology.it/2011congress/index.html
  96. Costa L , Carvalho CMB, Faustino MAF, Tomé JPC, Neves GPMS, Tomé AC, Cavaleiro JAS, Cunha A, Gomes NCM, Almeida A (2011) Behaviour of a non-enveloped virus after ten repeated cycles of aPDT. (see details)
  97. Silva Y., Calado R., Gomes N.C.M., Cunha A., Almeida A. (2011) Application of a rapid method for bacteria detection, in order to evaluate the efficiency of phage therapy as an alternative to inactivate pathogenic bacteria in fish farms. (see details)
  98. Silva Y.J., Calado R.J., Gomes N.C.M., Cunha A., Almeida A. (2011) Aplicação de um método rápido de detecção bacteriana para avaliar a eficácia da terapia fágica como alternativa para inactivar bactérias patogénicas em pisciculturas. (see details)
  99. Alves E., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2010) Antimicrobial photodynamic therapy in aquaculture: effect of physical and chemical properties of water on the photoinactivation of Vibrio fischeri. (see details)
    Link: http://www.esp-photobiology.it/school.html
  100. Faustino M.A.F., Tavares A., Carvalho C.M.B., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Alves E., Almeida A. (2010) Potential development of bacterial resistance and bacterial viability recovery after photodynamic therapy. (see details)
    Link: http://www.icpp-spp.org/index.php
  101. Tomé J.P.C., Almeida M.A., Alves E., Carvalho C.M.B., Cavaleiro J.A.S., Costa L., Cunha M.A., Faustino M.A.F., Lin Z., Neves M.G.P.M.S., Rocha J., Tomé A.C. (2010) Nanomagnet-Porphyrin Hybrids for Microorganisms Photoinactivation. (see details)
    Link: http://www.icpp-spp.org/index.php
  102. Pires, A.C.C., Cleary, D.F.R., Calado, R., Almeida, A., Cunha, Â., Cavalcanti, S.D.G.A., Smalla, K., Gomes, N.C.M. (2010) Rhizosphere Effect on Archaeal Communities Present in Mangrove Sediment. (see details)
  103. Gomes C.F.A.C., Faustino M.A.F., Neves M.G.P.M.S., Cavaleiro J.A.S., Almeida A., Cunha A., Tomé J.P.C. (2010) Cationic Galactoporphyrins on Microorganism Photoinactivation. (see details)
  104. Melo M.N., Costa D.D., Santos M.C., Oliveira V., Saraiva J., Cunha A., Almeida A. (2010) Conteúdo em flavonóides e fenóis totais e actividade antioxidante de extractos de lúpulo obtidos sob alta pressão. (see details)
  105. Pereira J.B., Alves E.F.A., Faustino M.A.F., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A, Almeida A., Tomé J.P.C. (2010) Cationic Phthalocyanines as Antimicrobial Agents. (see details)
  106. Pereira J.B., Alves E.F.A., Faustino M.A.F., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A, Almeida A., Tomé J.P.C. (2010) Cationic Phthalocyanines as Antimicrobial Agents. (see details)
  107. Moreira A., Pedrosa-de-Jesus M.H., Correia A., Cunha A. (2010) Assessing student’s questioning in group-based learning: A study with biology. (see details)
  108. Gomes C., Gomes C., Neves M.G., Neves M.G., Cavaleiro J., Cavaleiro J., Almeida A., Almeida A., Cunha A., Cunha A., Tomé J. (2010) New cationic glycoporphyrin for the photoinactivation of microorganisms. (see details)
  109. Pereira J., Carvalho C., Alves E., Neves G., Cavaleiro J., Almeida A., Cunha A., Tomé J., , , , , (2010) Multi-charge phthalocyanines for microorganisms photoinactivation. (see details)
  110. Cunha A., Almeida M.A., Coelho F., Framegas D., Gomes N.C.M., Louvado A. (2010) Surfactant-resistant bacteria from the marine surface microlayer. (see details)
  111. Salvador A., Baptista I., Barros A., Cunha A., Almeida A., Rocha S.M. (2010) HS-SPME combined with GC × GC-ToFMS: a powerful toll for assesssing microbial contamination of cereals and coffee beans. (see details)
  112. Salvador A., Baptista I., Barros A., Cunha A., Almeida A., Rocha S.M. (2010) HS-SPME combined with GC × GC-ToFMS: a powerful toll for assesssing microbial contamination of cereals and coffee beans. (see details)
  113. Costa L, Carvalho CMB, Faustino MAF, Tomé JPC, Neves GPMS, Tomé AC, Cavaleiro JAS, Cunha A, Gomes NCM, Almeida A (2010) Study of viral resistance following repeated exposure to aPDT and recovery of viability. (see details)
  114. Alves E., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2010) Antimicrobial photodynamic therapy in aquaculture: effect of temperature, pH, salinity, oxygen and organic matter on the photoinactivation of Vibrio fischeri. (see details)
  115. Coelho F., Sousa S., Santos L., Santos A. L., Almeida A., Cunha A. (2009) Bacterioneuston of Ria de Aveiro: abundance, heterotrophic activity and degradation of PAH. (see details)
  116. Coelho F., Moreira A., Simões C., Gomes F., Sousa S., Ramos A., Louvado A., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) Microbiologia Ambiental: potencial biotecnológico da Ria de Aveiro. (see details)
  117. Coelho F., Sousa S., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading bacterial community in an estuarine system. Biological Responses to Chemical Contaminants: from molecular to community level. (see details)
  118. Prata C. , Ribeiro A. , Cunha A. , Gomes N. C. M. , Almeida A. (2009) Marine surface microlayer as a source of viruses. (see details)
  119. Tavares A., Dias S.R.S., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Almeida A. (2009) Photoinactivation mechanism of Gram negative recombinant bioluminescent bacteria by cationic porphyrins. (see details)
    Link: http://www.esp-photobiology.it/2009congress/
  120. Carneiro I.V.M., Pereira J.B., Tomé J.P.C., Carvalho C.M.B., Tomé A.C., Neves M.G.P.M.S., Faustino M.A.F., Alves E., Tavares A., Cunha Â., Almeida A., Cavaleiro J.A.S. (2009) Synthesis and biological evaluation of pyridine-4-sulfanyl-substituted-substituted phthalocyanines. (see details)
  121. Costa D.C.S. , Alves D.A., Carvalho C.M.B., Tomé J.P.C., Tomé A.C., Neves M.G.P.M.S., Faustino M.A.F., Cavaleiro J.A.S., Alves E., Tavares A., Cunha Â., Almeida A. (2009) Synthesis and biological evaluation of new water-soluble porphyrins. (see details)
  122. Dias S.R.S., Carvalho C.M.B., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Alves E., Costa L., Tavares A., Almeida A., Cunha Â., Cavaleiro J.A.S. (2009) New immobilized photosensitizers for the photoinactivation of environmental microorganisms. (see details)
  123. Teixeira D.F.R., Neves M.G.P.M.S., Marques M.G.S., Ramos C.I.V., Tomé J.P.C., Tomé A.C., Alves E., Tavares A., Almeida A., Cunha Â., Faustino M.A.F., Cavaleiro J.A.S. (2009) New photosensitizing materials based on immobilized chlorin on silica. (see details)
  124. Tavares A., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Costa L., Almeida A. (2009) Study of the photodynamic inactivation mechanism of a recombinant bioluminescent Escherichia coli. (see details)
    Link: http://www.iuf.uni-duesseldorf.de/ICP2009/
  125. Tavares A., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J., Carvalho C., Cunha A., Gomes N., Alves E., Almeida A. (2009) Study of the photoinactivation mechanisms of a recombinant bioluminescent Escherichia coli. (see details)
    Link: http://capgb.web.ua.pt/34F2021C-F81D-4075-9C28-F9AB932760D9_files/Progra...
  126. Mendes C., Santos A.L., Gomes N.C.M., Cunha A., Almeida A (2009) ROLE OF LYSOGENY AT THE AIR-WATER INTERFACE. (see details)
  127. Pereira C, Santos A L, Arrojado C, Santos M, Cunha A, Gomes NCM, Almeida A (2009) Phage effects on the structural bacterial diversity in aquaculture water. (see details)
  128. Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B, Tomé J.P.C, Faustino M.A.F, Neves M.G.P.M.S, Tomé A.C, Cavaleiro J.A.S, Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. (see details)
  129. Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S, Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. (see details)
  130. Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S, Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. (see details)
  131. Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. (see details)
  132. Oliveira V., Santos A.L., Coelho F., Aguiar C., Sousa S., Lopes S., Gomes N.C.M, Almeida A., Cunha A. (2009) Bacterial in salt-marsh sediments: Influence of plant colonization on abundance, Physiological diversity and heterotrophic activity (Ria de Aveiro, Portugal). (see details)
  133. Oliveira V., Santos A.L., Coelho F., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Structural diversity, physiological profiles and abundance of sulfate-reducing bacteria in bacterial communities of salt-marsh sediments (Ria de Aveiro, Portugal). (see details)
  134. Oliveira V., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Património Microbiológico do Sapal da Ria de Aveiro: importância das bactérias para a reciclagem de matéria orgânica. Congresso Internacional de História e Património de Aveiro. (see details)
  135. Silva R.N., Tómas A.C., Tómas J.P.C., Neves M.G.P.M.S., Faustino M.A.F., Cavaleiro J.A.S., Oliveira V., Almeida A., Cunha A. (2009) Evaluation of the adsorvation/activity relationship of a cationic porphyrin in Bacillus endospores. (see details)
  136. Santos A.L., Baptista I., Oliveira V., Lopes S., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Role of Photochemically-Induced Oxidative Stress in Determining the Biological Effects of UV Radiation in Bacteria. (see details)
  137. Pereira C., Santos A. L., Arrojado C., Cunha A., Gomes N.C.M., Newton N.C.M., Almeida A. (2009) Bacterial diversity of aquaculture systems on the Ria de Aveiro estuarine. (see details)
  138. Santos A.L., Lopes S., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Resistance to DNA-Damage and UV-Induced Oxidative Stress in Estuarine Bacterioneuston. (see details)
  139. Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. (see details)
  140. Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Biotechnological Potential of Surfactant Resistant Bacteria from the Surface Microlayer. (see details)
  141. Pereira C., Santos A. L., Arrojado C., Cunha A., Gomes N.C.M., Almeida A. (2009) Bacterial diversity of aquaculture systems on the Ria de Aveiro estuarine. (see details)
  142. Santos A.L., Lopes S., Alves E., Gomes N.C.M., Correia A., Almeida A., Cunha A. (2009) Involvement of reactive oxygen species in UVR-induced damage of estuarine bacterioneuston isolates. (see details)
    Link: http://www.esp-photobiology.it/2009congress/
  143. Santos A.L., Baptista I., Henriques I., Correia A., Almeida A., Cunha A. (2009) Effects of Ultraviolet Radiation on the Activity, Structure and Diversity of Estuarine Bacterioneuston. (see details)
  144. Santos, A.L., Santos, A.L., Baptista, I., Baptista, I., Lopes, S., Lopes, S., Gomes, N.C.M., Henriques, I., Gomes, N.C.M., Henriques, I., Correia, A., Almeida, A., Almeida, A., Correia, A., Cunha, A., Cunha, A. (2009) Biological and physiological responses of bacterioneuston and bacterioplankton to experimental UV-B exposure. (see details)
  145. Santos A.L., Lopes S., João C., Henriques I., Gomes N.C.M., Correia A., Almeida A., Cunha A. (2009) UV Radiation induced inactivation and recovery potential in bacterioneuston isolates. (see details)
  146. Santos A.L., Coelho F., Santos L., Mendes C., Louvado A., Sousa S., Lopes S., Moreira A., Gomes F., Henriques I., Almeida A., Correia A., Gomes N.C.M., Cunha A. (2009) Characterization and Biotechnological Potential of Bacterioneuston. (see details)
  147. Santos A.L., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Impact of UV-B radiation on estuarine and freshwater microbial communities. (see details)
  148. Pires, A.C.C., Santos, A.L., Becking, L.E., Voogd, N.J., Almeida, A., Cunha, A., Calado, R., Cleary, D.F.R., Gomes, N.C.M (2009) Freeze-thaw pre-lysis may not improve microbial DNA extraction from sponges. (see details)
  149. Gomes, N.C.M., Cleary, D.F.R., Pinto, F.N. , Egas, C., Almeida, A., Cunha, A., Mendonça-Hagler, L.C.S., Smalla, K. (2009) Rhizosphere Microbial Communities in Polluted Urban Mangroves: insights gained by massively parallel pyrosequencing. (see details)
  150. Coelho F. L. , Santos L, Santos A. L. , Almeida A., Cunha A. (2008) Comparative analysis of bacterioneuston and bacterioplankton along a gradient of contamination with polycyclic aromatic hydrocarbon. (see details)
  151. Santos A.L., Henriques I., Correia A., Almeida A., Cunha A. (2008) Effects of Ultraviolet Radiation on Estuarine Bacterioneuston and Bacterioplankton (Ria de Aveiro, Portugal). (see details)
  152. Santos A.L., Santos L., Henriques I., Correia A., Almeida A., Cunha A. (2008) Alretações globais e ecossistemas estuarinos: Impacto da radiação ultravioleta nas comunidades bacterianas da Ria de Aveiro. (see details)
  153. Coelho F., Santos L., Santos A.L., Almeida A., Cunha A. (2008) Microrganismos nas águas da Ria de Aveiro: Comparação entre bacterioneuston e bacterioplâncton ao longo de um gradiente de contaminação. (see details)
  154. Silva Y., Salvador S. , Cunha A,., Almeida A . (2008) Avaliação da qualidade microbiológica em aquaculturas localizadas na Ria de Aveiro. (see details)
  155. Coelho F., Santos L., Santos A. L., Almeida A., Cunha A. (2008) Comparative analysis of bacterioneuston and bacterioplankton along a gradient of contamination with polycyclic aromatic hydrocarbon. (see details)
  156. Santos A.L., Henriques I., Correia A., Almeida A., Cunha A. (2008) UV-induced stress and UV resistance in bacterioneuston. (see details)
  157. Baptista, I., Cunha, A., Almeida, A. (2008) Determination of Specific Conversion Factors and Incubation Conditions for the Estimation of Bacterial Biomass Productivity in the Estuarine System of Ria de Aveiro. (see details)
  158. Rodrigues, A.M., Quintino, V. , Pinho, R., Lourenço, A., Lopes, M.L., Leão, F., Almeida, M.A., Cunha, M.A., Pereira, R. (2008) Descobrindo a Biodiversidade na Cidade. (see details)
  159. Rodrigues, A.M., Quintino, V., Pinho, R., Lourenço, A., Lopes, M., Leão, F., Almeida, M.A., Cunha, M.A., Pereira, R. (2008) Descobrindo a Biodiversidade na Cidade. (see details)
  160. Oliveira, J., Cunha, A., Castilho, F., Romalde, J. L., Pereira, M. J. (2008) Bivalve Microbial Contamination and Depuration. (see details)
  161. Almeida MA, Baptista I, Cunha MA, Carvalho CMB, Gomes ATPC, Faustino MAF, Tomé JPC, Neves MGPMS, Tomé AC, Zhi Lin, Rainho JP, Rocha J, Cavaleiro JAS (2007) Photoinactivation of sewage bacteriophages using cationic porphyrins. (see details)
  162. Santos L, Cunha MA, Gomes A, Santos AL, Hornibrook E, Pinheiro LM, Nuzzo M, Oliveira V, Almeida MA (2007) Distribution and activity of prokaryote communities in the sediments of the mud volcano Porto (Gulf of Cadiz). (see details)
  163. Santos L, Almeida MA, Niemann H, Boetius A, Boetius A, Cunha MA, Pinheiro LM, Niemann H, Cunha MA, Almeida MA, Magalhães V, Pinheiro LM (2007) Microbial communities involved in anaerobic methane oxidation in mud volcanoes from the Gulf of Cadiz. (see details)
  164. L. Santos, F. Coelho, C. Mendes, L. Nance, E. Santos, A. Cunha, A. Almeida (2007) Does photochemical alteration of dissolved organic matter influence the structure and activity of the estuarine prokaryote communities?. (see details)
  165. Oliveira V, Santos AL, Mendes C, Santos L, Almeida A, Cunha A (2007) Influence of plant colonization on te size, physological diversity and heterotrophic activityof salt marsh bacteriobenthos (Ria de Aveiro, Portugal). (see details)
  166. Santos AL, Mendes C, Coelho F, Oliveira V, Santos L, Almeida A, Cunha A (2007) Dynamics of bacterioneuston and bacterioplankton communities in the estuarine system Ria de Aveiro, Portugal. (see details)
  167. Bessa V, Lopes AR, Santos L, Pereira MJ, Almeida A, Cunha A (2007) Bacterioplankton dynamics during the development of cyanobacteria bloom in a Portuguese freshwater shallow lake (Lagoa da Vela). (see details)
  168. Almeida A , Cunha A, Gomes A, Santos L, Trigo C (2007) Viruses and pathogenic bacteria f fish in two aquaculture systems of the estuarine system Ria de Aveiro. (see details)
  169. Almeida A, Costa L, Cunha A, Carvalho C, Tomé J, Faustino M A, Neves M. G, Tomé A, Cavaleiro J (2007) Effects of light intensity and porhyrin concentration on sewage bacteriophage inactivation. (see details)
  170. Oliveira A, Cunha A, Almeida A, Carvalho C, Tomé J, Faustino MAF, Neves MG , Tomé AC , Cavaleiro J (2007) Porphyrin derivatives as photosensitizes for the inactivation of bacterial endospores. (see details)
  171. Almeida A, Almeida A., Cunha A, Cunha A., Santos L, Santos L., Salvador S, Salvador S., Gomes A, Gomes A. (2007) Evaluation of the impact of two aquaculture systems on bacterial communities of the estuarine system Ria de Aveiro. (see details)
  172. Alves E., Carvalho C., Tomé J., Faustino A., Neves G., Tomé A., Cavaleiro J., Cunha A., Almeida A. (2007) Recombinant bioluminescent Escherichia coli: photodynamic inactivation by cationic porphyrin derivatives under artificial and solar light irradiation. (see details)
    Link: http://www.formatex.org/biomicroworld2007/acceptedabstracts.php
  173. Costa L, Carvalho C, Tomé J, Faustino A, Neves G, Tomé A, Cavaleiro J, Zhi Lin, Rainho J, Rocha J, Cunha A, Almeida A (2007) Sewage bacteriophage photoinactivation by porphyrins immobilized in solid matrixes. (see details)
  174. Carvalho, C. M. B., , Faustino, M. A. F., , Tomé, J. P. C., , Neves, M. G. P. M. S., , Tomé, A. C., , Lin, Z., , Rainho, J. P., , Almeida, M. A., , Cunha, M. A., , Rocha, J., , Cavaleiro J. (2007) Immobilized porphyrins: synthesis and antiviral evaluation. 1. (see details)
  175. Almeida A., Salvador S., Loureiro C., Cunha A., Lopes A.R., Bessa V.S., Pereira M.J. (2007) Variation of viruses-to-bacterium ratio during a phytoplankton bloom in a shallow freshwater lake. (see details)
  176. Alves E., Almeida A., Cunha A., Carvalho C., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J., Lin Z., Rainho J., Rocha J. (2007) Antibacterial activity of cationic porphyrin derivatives against enteric bactéria. (see details)
    Link: http://capgb.web.ua.pt/34F2021C-F81D-4075-9C28-F9AB932760D9_files/Resumo...
  177. Costa L., Costa L. , Almeida A., Almeida A., Cunha A., Cunha A., Carvalho C., Tomé J., Faustino M.A., Tomé J., Neves M.G., Faustino M.A.F., Neves M.G., Tomé A., Cavaleiro J., Tomé A., Cavaleiro J. (2007) Photoinactivation of sewage bacteriophages with cationic porphyrins. (see details)
  178. Oliveirra A., Cunha A., Carvalho C., Tomé J., Faustino M.A.F. , Neves M.G., Tomé A.C., Cavaleiro J. (2007) Porphyrin derivatives as photosensitizes for the inactivation of bacterial endospores. (see details)
  179. Santos L., Coelho F., Loureiro N., Santos E., Cunha A., Almeida A. (2007) Effect of photochemical organic matter degradation on microbial activity in the estuarine system Ria de Aveiro. (see details)
  180. Sousa I., Cunha A., Sampaio P., Pais C. (2007) Descrição e caracterização de um microssatélite no gene IFF8 de Candida albicans. (see details)
  181. Almeida A., Costa L., Cunha A., Carvalho C., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J. (2007) Effects of light intensity and porhyrin concentration on sewage bacteriophage inactivatio. (see details)
  182. Bessa V.S.S., Lopes A.R., Santos L., Almeida A., Cunha A., Pereira M.J. (2007) Bacterioplankton assessing during the course of a cyanobacterial bloom in a PPortuguese freshwater shallow lake (Lagoa da Vela). (see details)
  183. Gomes A., Santos L., Cunha A., Almeida A. (2007) Prokaryote and viral profiles of abundance in the Semenovich, Porto and Bonjardim mud volcanoes. (see details)
  184. Mendes C., Santos A.L., Santos L., Cunha A,, Almeida A. (2007) Profiles of abundance, viability and productivity of bacterioneuston in the estuarine system Ria de Aveiro. (see details)
  185. Oliveira A., Cunha A., Almeida A., Carvalho C., Faustino M.A.F. , Neves M.G., Tomé A.C., Cavaleiro J. (2007) Porphyrin derivatives as photosensitizers for the inactivation of bacterial endospores. (see details)
  186. Santos A.L., Mendes C., Coelho F., Oliveira V., Santos L., Almeida A., Cunha A. (2007) Seasonal and spatial patterns of bacterioneuston and bacterioplankton communities in the estuarine system Ria de Aveiro, Portugal. (see details)
  187. Almeida A., Cunha A., Gomes A., Santos L., Trigo C (2007) Viruses and pathogenic bactéria of fish in two aquaculture systems of the estuarine system Ria de Aveiro. (see details)
  188. Almeida A., Cunha A., Santos L., Salvador S., Gomes A. (2007) Evaluation of the impact of two aquaculture systems on bacterial communities of the estuarine system Ria de Aveiro. (see details)
  189. Alves E., Almeida A., Cunha A., Carvalho C., Tomé J., Faustino M.A.F., Neves M.G., Tomé A., Cavaleiro J. (2007) Effect of porphyrin charge in the inactivation of enteric bacteria. (see details)
    Link: http://www.fcma.ualg.pt/same10/
  190. Costa L., Almeida A., Cunha A., Carvalho C., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J. (2007) Effects of cationic porphyrins charge on a sewage bacteriophage inactivation. (see details)
  191. Cunha A., Coelho F., Santos A.L., Oliveira V., Santos L., Almeida A. (2007) Characterization of bacterioplankton and bacterioneuston in the estuarine system Ria de Aveiro, Portugal. (see details)
  192. Santos L., Coelho F., Loureiro N., Santos E., Cunha A., Almeida A. (2007) Does photochemical alteration of dissolved organic matter influence the structure and activity of estuarine prokaryote communities?. (see details)
  193. Cruz C, Santos AL, Santos L, Cunha A, Almeida A (2007) Profiles of abundance, viability and productivity of bacterioneuston in the estuarine system Ria de Aveiro. (see details)
  194. Alves E., Almeida A., Cunha Â., Carvalho C., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J. (2007) Antibacterial activity of cationic porphyrin derivatives against enteric bacteria. (see details)
    Link: http://www.ciimar.up.pt/enpgcb/
  195. Alves E., Almeida A., Cunha Â., Carvalho C., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J. (2007) Terapia Fotodinâmica Antimicrobiana. (see details)
  196. Santos, L.,, Baptista I., Henriques I., Sousa I., Correia A., Cunha A., Almeida A. (2006) Structure of bacterial assemblages down water column of a shallow estuarine system (Ria de Aveiro, Portugal). (see details)
  197. Rodrigues S., Pereira M.E., Cunha A., Almeida A., Duarte A.C. (2006) Recommendations from environmental monitoring in “Ria de Aveiro”: organic and inorganic loads, microorganisms and industrial discharges. (see details)
  198. Coelho F., Santos L., Almeida A., Cunha A. (2006) Comparative analysis of bacterioneuston and bacterioplankton in na estuarine system (Ria de Aveiro, Portugal). (see details)
  199. Cunha A., Santos L., Coelho F., Almeida A. (2006) Heterotrophic activity of bacterioneuston and bacterioplankton in an estuarine system (Ria de Aveiro, Portugal). (see details)
  200. Cunha A., LIma E., Matos P., Coelho F., Loureiro N., Almeida A. (2006) Abundance, physiological diversity and activity of salt marsh bacteriobenthos (Ria de Aveiro, Portugal). (see details)
  201. Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Lin Z., Rainho J.P., Almeida M.A., Cunha M.A., Rocha J., Cavaleiro J.A.S. (2006) Synthesis and photochemical properties of immobilized porphyrins. (see details)
  202. Almeida A,, Loureiro N., Baptista I., Cunha A., Coelho F., Santos L. (2006) Relashionship between bacterial membrane integrity and bacterial production in the surface microlayer of the estuarine system Ria de Aveiro. 5º Simpósio sobre a Margem Ibérica Atlântica. (see details)
  203. Almeida A., Salvador S., Cunha A. (2006) Evaluation of bacterial contamination of two aquaculture systems: impact on water quality of the estuarine system Ria de Aveiro. (see details)
  204. Almeida MA.., Cunha MA.. (2006) Vertical Variation of Bacterial Production in Water Column of the Coastal Atlantic Region off Aveiro (NW Portugal). (see details)
  205. Almeida MA, Baptista I, Coelho F, Cunha A, Loureiro.N, Salvador S, Santos, L (2006) Vertical variation of viruses-to-bacterium ratio in a estuarine System (Ria de Aveiro, Portugal). (see details)
  206. Santos L, Almeida MA, Coelho F, Cunha MA, Lima E, Loureiro N, Matos P, Salvador S, Pinheiro LM (2006) Distribution, activity and diversity of microbial communities from sediments of the mud volcano Mercator (Gulf of Cadiz). (see details)
  207. Santos L, Niemann H, Boetius A, Pinheiro LM, Cunha A, Almeida A (2006) Microbial communities involved in anaerobic methane oxidation in mud volcanoes from the Gulf of Cadiz. (see details)
  208. Coelho F., Santos L., Almeida A., Cunha A. (2006) Comparative Analysis of Bacterioneuston and Bacterioplankton in an Estuarine System (Ria De Aveiro, Portugal). (see details)
  209. Cunha A., Almeida A. (2005) Bacterial activity in portuguese coastal waters between an estuarine plume and a sewage outfall. (see details)
  210. Cunha A., Almeida A., Ré A., Martins A., Alcântara F. (2005) Perylene toxicity in the estuarine environment of Ria de Aveiro (Portugal). (see details)
  211. Cunha A., Almeida A. (2005) Relations between nitrogen availability, bacterioplankton ectoenzymatic activity and monomer incorporation in an estuarine system. (see details)
  212. Carvalho C.M.B., Gomes A.T.P.C., Faustino M.A.F., Tomé J.P.C, Neves M.G.P.M.S., Tomé A.C., Lin Z., Fernandes S.C.D., Prata C.C.B., Almeida M.A., Cunha M.A., Rocha J., Cavaleiro J.A.S. (2005) Photoinactivation of sewage bacterial assemblages present in wastewater by neutral and cationic porphyrins. (see details)
  213. Carvalho C.M.B., Gomes A.T.P.C., Faustino M.A.F., Tomé J.P.C, Neves M.G.P.M.S., Tomé A.C., Lin Z., Rainho J.P., Fernandes S.C.D., Prata A.C., Almeida M.A., Cunha M.A., Rocha J., Cavaleiro J.A.S. (2005) Photoinactivation of wastewater microorganisms by neutral porphyrins. (see details)
  214. Almeida M.A., Cunha M.A . (2005) Influence of nitrogen availability on the distribution of bacterial productivity in an estuarine system. (see details)
  215. Baptista I., Santos L., Sousa I., Santos E., Cunha M.A., Almeida M.A. (2005) Factors underlying the shape of vertical profiles of bacterial density, viability and productivity in the ecosystem Ria de Aveiro. (see details)
  216. Almeida M.A., Cunha M.A., Santos L., Baptista I., Malatkova B., Santos E.B.H. (2005) Effect of organic matter composition on bacterial activity distribution down the water column of a shallow estuarine system. (see details)
  217. Almeida MA, Cunha MA, Fernandes S, Sobral P, Alcântara F (2005) Copper effects in bacterial activity of estuarine silty sediments. (see details)
  218. Gomes A, Carvalho C, Faustino MA, Tomé JP, Neves MG, Tomé AC, Zhi Lin, Rainho J, Fernandes S, Prata AC, Almeida MA, Cunha MA, Rocha J, Cavaleiro J (2005) Photoinactivation of wastewater microorganisms by cationic and neutral porphyrins. (see details)
  219. Gomes A, Carvalho C, Faustino MA, Tomé JP, Neves MG, Tomé AC, Zhi Lin, Rainho JP, Fernandes SC, Prata AC, Almeida MA, Cunha MA, Rocha J, Cavaleiro JA (2005) Cationic Porphyrins as Photosensitizers in Cationic Porphyrins as Photosensitizers in Photoinactivation of Sewage Bacterial Assemblages. (see details)
  220. Rainho J.P., Rocha J., Lin Z., Faustino M.A., Cunha M.A., Almeida M.A., Tomé J., Tomé A., Neves G., Cavaleiro J., Carvalho C., Gomes A. (2005) Preparation of new immobilized photosensitizers. (see details)
  221. Sousa I., Baptista I., Santos L., Almeida M.A., Santos E., Cunha M.A. (2005) Effect of solar radiation on DOM quality and on marine bacterioplankton ectoenzymatic activity and monomer uptake. (see details)
  222. Sousa I., Batista I., Santo L., Almeida M.A., Santos E., Cunha M.A. (2005) Effect of solar radiation on DOM quality and on marine bacterioplankton ectoenzymatic activity and monomer uptake. (see details)
  223. Santos L, Cunha MA, Matos J, Pedrosa F, Almeida MA (2005) Impact of salt marsh bacterial communities to the bacterioplankton dynamics of two estuarine systems (Ria de Aveiro and Tagus Estuary). (see details)
  224. Henriques I., Alves A., Tacão M., Cunha A., Almeida A., Correia A. (2005) Genetic diversity and dynamics of free-living bacterial communities along an estuarine gradient (Ria de Aveiro, portugal). (see details)
  225. Cunha M.A., Almeida M.A., Pedrosa F., Matos J., Santos L. (2004) Actividade heterotrófica de comunidades bacterianas de sapais (Ria de Aveiro e estuário do Tejo). (see details)
  226. Pato P., Pinto C., Cunha A., Almeida A., Pereira M.E., Vale C., Duarte A.C . (2004) Tidal variability in the transport of particulate mercury. . (see details)
  227. Santos L, Cunha MA, Matos J, Pedrosa F, Almeida MA (2004) Exportação de carbono bacteriano do sapal para o estuário (Ria de Aveiro). (see details)
  228. Almeida M.A., Cunha M.A., Alcântara F. (2003) Reactivity of estuarine bacterioplankton production to spatial and seasonal changes in the trophic background (Ria de Aveiro, Portugal). II Plankton Symposium, 16-19 October ). (see details)
  229. Almeida M.A., Cunha M.A., Silva H., Caçador I (2003) Influence of the composition of salt marsh vegetation on bacterial activity. (see details)
  230. Pedro P, Tação M, Almeida A, Silva H, Cunha A (2003) Growth efficiency of heterotrophic bacteria in a salt marsh. (see details)
  231. Henriques I., Almeida A., Cunha A., Saavedra M.J., Correia A. (2003) Analysis of the bacterioplankton community in Ria de Aveiro: a molecular approach. (see details)
  232. Henriques I., Saavedra M. J., Almeida A., Cunha A., Correia A. (2003) Phylogenetic analysis of bacterioplankton community in Ria de Aveiro. (see details)
  233. Henriques I., Almeida A., Cunha A., Saavedra M.J., Correia A. (2003) Use of denaturing gradient gel electrophoresis to characterise bacterioplankton communities. (see details)
  234. Yamasaki A., Cunha M.A., Coelho E.V.M., Oliveira J.A.B.P., Duarte A.C., Gomes M.T.S.R. (2002) An acoustic wave biosensor to evaluate copper toxicity. (see details)
  235. Cunha M.A., Dias J.M., Almeida M.A., Fortes J.F., Alcântara F. (2001) Fluxes of bacterioplankton communuties and associated heterotrophic activities at the estuarine-ocean boundary (Ria de Aveiro, Portugal). (see details)
  236. Cunha M.A., Almeida M.A., Alcântara F. (2001) Ectoenzymatic activity and glucose heterotrophic metabolism in a shallow estuary (Ria de Aveiro, Portugal): influence of bed sediments and salt marshes. (see details)
  237. Almeida MA, Cunha MA, Alcântara F (2001) Bacterioplankton production in a shallow estuarine system (Ria de Aveiro): impact of salt marsh and bed sediments. (see details)
  238. Almeida MA, Cunha MA, Alcântara F (2001) Physiological responses of marine and brackish water bacterial assemblages in a tidal estuary (Ria de Aveiro, Portugal).,. (see details)
  239. Almeida M. A, Cunha M. A. (2000) Bacterioplâncton da Ria de Aveiro: variações tidais e geográficas. (see details)
  240. Almeida M.A., Cunha M.A., Alcântara F. (2000) Bacterioplankton thriving against the seasonal fluctuation of primary production in a shallow estuary. (see details)
  241. Cunha A., Almeida A., Alcântara F. (1998) Processos microbianos de degradação e reciclagem de matéria orgânica na Ria de Aveiro. (see details)
  242. Cunha M.A., Almeida M.A., Alcântara F. (1998) Variação da actividade bacteriana ao longo de um gradiente de salinidade. (see details)
  243. Cunha M.A., Almeida M.A., Alcântara F. (1998) Short term responses of the bacterial communities in the frontier with the sea. (see details)
  244. Cunha M.A., Almeida M.A., Alcântara F. (1998) Compartimentação da actividade respiratória aeróbia em ambientes estuarinos (Ria de Aveiro, Portugal). (see details)
  245. Cunha M.A., Almeida M.A., Alcântara F. (1997) Variação da actividade planctónica com o regime de marés na Ria de Aveiro. (see details)
  246. Cunha M.A., Alcântara F. (1995) HgCl2: Interferência na resposta de comunidades bacterianas estuarinas a pulsos de matéria orgânica. (see details)
  247. Rodrigues R., Cunha M.A., Alcântara F. (1992) Estudo da actividade do bacterioplancton no Canal de Mira (Ria de Aveiro): produção bacteriana e carga energética. (see details)
  248. Cunha M.A., Pereira M.G., Rodrigues R., Alcântara F. (1991) Flutuações anuais e tidais de parâmetros microbiológicos e hidrográficos no Canal de Mira (Ria de Aveiro). (see details)
  249. Cunha M.A., Almeida M.A., Alcântara F. (1990) Bacterial populations in the Ria de Aveiro, Western coast of Portugal. (see details)
  250. Cunha M.A., Bio A., Alcântara F. (1989) Géneros dominantes de bactérias saprófitas junto à embocadura do Canal de Mira. (see details)
  251. Alves E., Melo T., Santos N., Simões C., Maciel E., Dória M.L., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Helguero L., Domingues P., Domingues M.R.M., Almeida A. Photodynamic oxidation of bacterial membrane phospholipids: a new insight provided by lipidomics. (see details)
  252. Silva R. .N., Tomé A., Tomé J., Neves M., Faustino M., Cavaleiro J., Oliveira A., Almeida A., Cunha Â. Photoinactivation of Bacillus endospores: inter-specific variability of the inactivation efficiency. (see details)
  253. Almeida A Almeida J, Tomé JP, Neves MGPMS, Tomé AC, Cavaleiro JAS, Cunha A, Costa L,. Faustino MAF Photodynamic processes for disinfection of hospital wastewaters. (see details)
  254. Pereira C, Santos L, Silva AP, Cunha A, Romalde JL, Nunes ML, Almeida A Seasonal variation of bacterial communities in shellfish harvesting waters: preliminary study before applying phage therapy. (see details)
  255. New phtalocyanines bearing sulfonamide units. (see details)
  256. Teles, L.C, Lourencço, L., Cunha, A., Faulstino, M.A.F., Neves, M.G.P.M.S., Cavaleiro, J.A.S., Tomé, J.P.C., Almeida, A. Application of phthalocyanines and porphyrins in bloo sterilization. (see details)
  257. Mesquita, M., Menezes, J.C.M.D.S, Neves, M.G.P.M.S., Cavaleiro, J.A.S., Cunha, A., Almeida, A., Faustino, M.A.F., Immobilized cholrine derivatives and its reusability on photodynamic inactivation of bioluminescent e. coli . (see details)
  258. Fernández, L., Almeida, A., esteves, V., cunha, A., Schneider, R., Tomé, J.P.C., Efficient removal of 17beta-estradiol from aqueous media by visible-light assisted photosensitization and biodegradationt . (see details)
  1. Tchepel O., Pereira E., Evtyugina M., Almeida A., Cunha A., Nunes T., Duarte R. (2010) Biosphere-Atmosphere Interaction in a Changing Environment: from Local to Global Scale. Workshop Proceeding. CESAM, Universidade de Aveiro. AMB-QA-10/2010, (see details)
  2. Correia A., Duarte A.C., Borrego C., Moreira M.H., Almeida A., Cunha A., Barroso C.M., Lopes C., Pereira E., Queiroga H., Sampaio L., Cunha M.R., Válega M., Monterroso P., Abreu S. (2001) Desassoreamento da Ria de Aveiro/1ª Fase – Monitorização da Qualidade da Água, Sedimentos e Bentos na Ria de Aveiro. Relatório Final,. Instituto de Ambiente e Desenvolvimento. IMA 16.01-00/19, (see details)
  3. Quintino V., Neves R., Leitão P.C., Ferreira J., Coelho H., Silva J.F., Duck R., Duarte A.C., Rocha T., Pereira E., Cunha A., Almeida A., Lopes C., Abreu S., Pereira A., Pereira T., Oliveira M., Henriques I., Rodrigues A., Subida M.D., Oliveira J., Gil O., Santos I., Brito P., Válega M., Granja R., Antunes P., Santos C., Mendonça E., Barreiros A., RAvara A., Monterroso P., Catarino J. (2001) Monitorização Ambiental Associada ao Funcionamento do Emissário de S. Jacinto. Relatório de Progresso. IPIMAR, Inst. Hidrográfico, INETI, Inst. Superior Técnico, Univesidade de Aveiro. (see details)
  4. Borrego C., Coutinho M., Mata P., Correia A., Cunha A., Duarte A.C., Pereira C., Pereira E., Moreira M..H., Válega M., Monterroso P., Abreu S. (2000) Desassoreamento da Ria de Aveiro/1ª Fase – Análise da Qualidade da Água, Sedimentos e Bentos na Ria de Aveiro. Relatório de Progresso. Instituto de Ambiente e Desenvolvimento. REL. 55.00-00/19, (see details)
  1. Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria de Aveiro. Actas das Jornadas da Ria de Aveiro. 295-301. (see details)
  2. Alves E., Arrojado C., Pereira C., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2011) Terapia Fotodinâmica Antimicrobiana como Alternativa aos Antibióticos para Inactivar Bactérias Patogénicas em Águas de Piscicultura. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp. (see details)
    Link: http://la.cesam.ua.pt/encontros_cientificos/2011/LivroActasJornadasRiaAv...
  3. Alves E., Tomé J., Neves G., Tomé A., Cavaleiro J., Faustino A., Cunha Â., Gomes N., Almeida A. (2011) Antimicrobial photodynamic therapy: Low environmental impact approach to inactivate pathogenic bacteria in aquaculture systems. Research Day@UA. University of Aveiro. 8th June 2011, Aveiro, Portugal. (see details)
    Link: http://www.ua.pt/research/PageText.aspx?id=13053
  4. Domingues P.M., Louvado A., Coelho F.J.R.C., Santos A.L., Gomes N.C.M., Almeida A., Cunha A. (2011) Isolamento e Caracterização de Bactérias Produtoras de Biossurfactantes da Ria de Aveiro. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.). Actas das Jornadas da Ria de Aveiro. CESAM, Universidade de Aveiro. Aveiro. Portugal. 214-218. (see details)
  5. Almeida A., Cunha C. , Gomes N.C.M., Santos L., Mendes C. , Pereira C. (2011) Impacto do Virioplâncton sobre a Comunidade Bacteriana da Ria de Aveiro. Jornadas da Ria de Aveiro (2011). In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp. (see details)
  6. Santos L., Gomes N. C. M., Cunha A., Almeida A. (2011) Variação da abundância e produtividade bacteriana na Ria de Aveiro durante um período de 10 anos (1996-2007) In: Almeida A. AFL, Bernardes C., Dias J. M., Gomes N. C. M., Pereira E., Queiroga H., Serôdio J. e Vaz N. (ed) Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar, Aveiro, p 205-213. (see details)
  7. Pereira C., Silva Y.J., Gomes N.C.M., Cunha A., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em pisciculturas.In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. pp. 340-348 . (see details)
    Link: http://la.cesam.ua.pt/encontros_cientificos/2011/LivroActasJornadasRiaAv...
  8. Rodrigues M., Dias J.M., Leandro S., Morgado F., Cunha A., Almeida A., Oliveira A., Queiroga H. (2011) Caracterização Sinóptica dos Gradientes nos Canais da Ria de Aveiro. Parte II: Oxigénio, Clorofila e Zonação Ecológica. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. and Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM – Centro de Estudos do Ambiente e do Mar. Aveiro. 373 pp., ISBN: 978-972-789-337-9, 151-158. (see details)
    Link: http://la.cesam.ua.pt/encontros_cientificos/2011/LivroActasJornadasRiaAv...
  9. Lopes J.F., Almeida M.A., Cunha M.A. (2011) Alves E., Arrojado C., Pereira C., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A.(2011) Terapia Fotodinâmica Antimicrobiana como Alternativa aos Antibióticos para Inactivar Bactérias Patogénicas em Águas de Piscicultura. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp. (see details)
  10. Louvado A., Santos A. L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N. C. M., Cunha Â. (2010) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer, Interdisciplinary Studies on Environmental Chemistry-Biological Responses to Contaminants, Eds., N. Hamamura, S. Suzuki, S. Mendo, C. M. Barroso, H. Iwata and S. Tanabe, pp. 89-95. © by TERRAPUB, Tokyo, 2010. (see details)
    Link: http://www.terrapub.co.jp/onlineproceedings/ec/03/pdf/BR_03089.pdf
  11. Tchepel O., Pereira E., Evtyugina M., Almeida A., Cunha A., Nunes T. , Duarte R. (2010) Biosphere-Atmosphere Interaction in a Changing Environment: from Local to Global Scale. Workshop Proceeding. CESAM, Universidade de Aveiro. AMB-QA-10/2010, Aveiro, Portugal. (see details)
  12. Carvalho C.M.B., Costa L., Alves E., Almeida A., Cunha M.A.S.D.A., Tomé J.P.C., Faustino M.A.F, Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Lin Z., Rainho J.P., Rocha J. (2007) Patente Nacional nº 103828 Materiais híbridos nanomagnete-porfirina, processo para a síntese e respectiva aplicação em desinfecção de águas. (see details)
  13. Pato P., Pinto C., Cunha A., Almeida M.A., Pereira M.E., Vale C., Duarte A.C. (2004) Tidal variability in the transport of particulate mercury. In: Proceedings of the 7th International Conference on Mercury as a Global Pollutant. Horvat M, Ogrinc N, Faganeli J, Kotnik J (Eds.), RMZ - Materials and Geoenvironment 51(2), pp. 1300-1303. (see details)
    Link: http://www.rmz-mg.com/letniki/rmz51/rmz51_1095-1466.pdf