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Newton C. Marcial Gomes

Newton C. Marcial Gomes

Principal Researcher

  • Department: Biology
  • Research Group: Marine & Estuarine Ecology
  • ISI Web of KnowledgeSM search factor : Author=(Gomes NCM) OR Author=(Gomes N) AND Address=(CESAM) NOT Author=(Gomes, Nuno)


Patents

Gomes, NCM, Oliveira, VJ, Coelho, FJRC, dos Santos, ARL. "A portable device, a method to read authentication labels and their uses”. International Patent: PCT/ IB2017/052570. Date of request: 28.04.2017. Publication Number: WO2017191575


Gomes NCM. “Molecular label containing dna molecules and process for marking and identifying the label”.  International Patent: PCT/PT2014/000056. Date of request: 22-09-2014. Publication Number: WO2015026254


Rocha, SM, Costa V, Ferreira J, Almeida A, Cunha A, Gomes NCM, Stein P, Petronilho S, Baptista I. "Equipment and flow extraction process of biological and chemical contaminants". International Patent: PCT (PT-PPI 42961-10), Date of request:10-12-2010. Publication Number: WO2012069888

Awards and Distinctions

2015 - University of Aveiro - 40 Years 40 Inventors 40 Entrepreneurs.
In September 2015, University of Aveiro published a special commemorative publication to celebrate its 40th anniversary. This joint initiative of the Technology Transfer Unit (UATEC) and the Business Incubator of the University of Aveiro (IEUA) recognized the work of 40 inventors and entrepreneurs from this institution in the last 40 years.
https://www.ua.pt/ReadObject.aspx?obj=39105


2014 - Prototype awarded - I Transfrontier Contest for Prototypes Oriented to the Market (Prototransfer). INESPO II - Innovation Network Spain-Portugal.


2014- PROVE IT - Financial award for development of the prototype “Use of chimeric DNA molecules for development of molecular barcode labels” (Newton Gomes). Technology Transfer Unit of the University of Aveiro (UATEC) and project GAPI 3. Portugal.


2010 - Awarded with National Innovation Prize (BES prize - Portugal) with the best Business Plan in the category of Ocean Economy. Portugal.


2009 - 1º prize for the best business proposal of the University of Aveiro presented in the Curso de Empreendedorismo de Base Tecnológica (CEBT09) with project "Fishcare". Portugal.

Scientific Entrepreneurship: innovation and stimulation of entrepreneurship activities in the biotechnology sector

February 2017 - Present - Member of the Mentall® mentor network for entrepreneurship of the Technology Transfer Unit of the University of Aveiro (UATEC). MentAll® is a mentoring network created by UATEC, whose main objectives are to support and consolidate entrepreneurial initiatives and encourage knowledge share between entrepreneurs and mentors.


 


July 2017 – For the second time DNA TRUSTAG was awarded with the Seal of Excellence by the European Commission within the EU Framework Programme for Research and Innovation. The proposal was scored as a high-quality project in a highly competitive evaluation process during the SME instrument phase 2 call (H2020-SMEInst-2016-2017). The company reached the 3º best score in Portugal and 9º place for all projects in the Topic: Engaging SMEs in security research and development. The technology commercialized by the company was developed by our group LEMAM at CESAM.


 


October 2016 - DNA TRUSTAG receives Horizon 2020 SME Instrument Phase 1 funding. The SME instrument is a funding program of the European Union, which aims to transform disruptive ideas into concrete innovative solutions with an European and global impact. https://uaonline.ua.pt/pub/detail.asp?lg=pt&c=48060


 


July 2016 - DNA TRUSTAG was awarded with the Seal of Excellence by the European Commission within the Horizon 2020 (EU Framework Programme for Research and Innovation). The seal certify the innovative character and commercialization potential of the technology developed by our group (LEMAM) at CESAM.


 


January 2016 - Co-Founder of DNA TRUSTAG a spin-off company of University of Aveiro. The company aims at providing and introducing into the market brand and product protection solutions based on an innovative DNA authentication technology. http://www.dnatrustag.com/


 


2012 – Present – Responsible for the course “Applied Environmental Microbiology and Bio-entrepreneurship” to promote/stimulate bio-entrepreneurial activities. University of Santa Cruz (UESC) (Bahia, Brazil). http://ppgbbm.uesc.br/

PROFESSIONAL ACTIVITIES

2016 - Present. Advisory Council Member of Broto Biotechnology Incubator. A bi-institutional incubator of State University of Santa Cruz (UESC) and State University of Feira de Santana (UEFS). http://broto.uesc.br/


2013 - Present. Principal Researcher (FCT Investigator Programme 2012) CESAM and Departament of Biology of the University of Aveiro, Portugal.


2009 - Present. Coordinator of the Laboratory for Molecular Studies of Marine Environments (LEMAM).


2007 -2013. Assistant Researcher at the Centre for Environmental and Marine Studies (CESAM) and Department of Biology (DeBio) of the University of Aveiro, Portugal.


2001 – 2007. Post-doctoral researcher. Federal Research Centre Julius Kühn-Institut (JKI), Germany.


1999 – 2000. Post-doctoral researcher. Federal Research Centre Julius Kühn-Institut (JKI), Germany.

ACADEMIC DETAILS

Ph.D. in Microbiology. Institute of Microbiology Prof. Paulo de Góes - Bloco I-CCS - Federal University of Rio de Janeiro - Rio de Janeiro-RJ - Brazil. Period: 01 of February 1995 - 20 of May 1999. Master in Microbiology. Dept. of Microbiology-Institute of Biological Sciences-Federal University of Minas Gerais-Belo Horizonte-MG-Brazil. Period: 01 of April 1992 - 28 of April 1995. Bachelor in Marine Biology. Integrated Faculties Maria Thereza, Niterói - RJ - Brazil. Period: 01 of August 1987 to 16 of July 1992.

RESEARCH INTERESTS

Multidisciplinary assessment of marine ecosystems exposed to anthropogenic contaminants and influence of global changes.


Structural and functional studies of microbial communities in marine ecosystems, plants and animal hosts.


From ecology to biotechnology: combine ecology and biotechnology disciplines for a better understanding of the diversity, eco physiological functions and biotechnological potential of marine microbes.


Development and validation of DNA based technologies for molecular diagnostics and authentication of natural and synthetic products.

Scientific Supervision

In progress
Concluded

Projects

In progress
  • RhizoMiS - Redesigning the rhizosphere microbiome of Salicornia for exploitation of bioproducts and improvement of bioprocesses See more
  • AquaHeal: Microbial modulation in aquacultures with recirculation system: towards a production system suppressor of diseases See more
  • EcoTech-SPONGE- Assessing the ecological functions and potential biotechnological applications of plasmid assemblages from microbial symbionts of marine sponges See more
Concluded
  • LínguaTox - Língua bioeletrónica para a deteção de toxinas marinhas em bivalves See more
  • NO RESET - Metamorphosis does not reset embryonic and larval history. Clarifying the role of offspring provisioning and larval feeding on early post-settlement performance of coastal marine invertebrates See more
  • Dynamics of the intestinal microbial flora, digestive enzymes activity and biochemical composition of marine invertebrate larvae in a globally changing ocean (Nº E-116/10) See more
  • SymbioCoRe - SYnergies through Merging BIOlogical and biogeochemical expertise in COral REsearch See more
  • STEP - Integrated System for Managing Fishfarm Effluents See more
  • LTER-RAVE - Long term monitoring in the Ria de Aveiro: towards a deeper understanding of ecological, environmental and economic processes See more
  • AQUASAFE - Development of new technologies to anticipate and diagnose disease outbreaks in aquaculture See more
  • RASTREMAR - Use of molecular tools in the traceability of marine food products See more
  • Phage therapy as a low environmental impact alternative to inactive phatogenic bacteria in fishfarming plants. See more
  • LUSOEXTRACT – Finding new natural compounds isolated from unique Portuguese ecosystems (AAC/SI/35/2009) See more
  • CARCACE - Colonization of mAmmal caRCasses in the deep Atlantic ocEan See more
  • Global climate change and pollution: a synergy designed for disaster? See more
  • Development of methods for the bioaccunulation of metals by endophytic bacteria See more
  • PORTONOVO- Water Quality in Harbours. / 2009-1/119 See more
  • SWIMGLO - The Gloria-SWIM plate boundary Faults connection and its importance on the propagation of tectonic deformation and deep See more
  • Remediation Processes in uranium and other mining areas See more
  • ARENA - Integrated ecological risk assessment of nanomaterials in temperate and tropical ecosystems See more
  • CAPTAR-Science and Environment for All See more
  • Desenvolvimento de um equipamento de medição do nível/grau de higienização e fúngico de produtos alimentares e de embalagem – MicroMed. See more

Publications

WoS Papers (119)
GOMES N. C. M., BORGES L., PARANHOS R., PINTO F. N., MENDONÇA-HAGLER L. C. S., SMALLA K. (2008) Exploring the diversity of bacterial communities in sediments of urban mangrove forests. In: Citation metrics. Fems Microbiology Ecology. 66, 1, 96-109.
Gomes N.C.M., Borges L., Paranhos R., Pinto F. N., Krögerrecklenfort E. , Mendonça-Hagler L.C.S., Smalla K. (2007) Diversity of ndo genes in mangrove sediments exposed to different sources of PAH pollution. In: Citation metrics. Applied And Environmental Microbiology. 73, 7392-7399.
Bihn C. T., Heur H., Gomes N. C. M., Kotzerke A., Fulle, M., Wilke, B. M., Schloter M., Smalla K. (2007) Short-term effects of amoxicillin on bacterial communities in manured soil. In: Citation metrics. Fems Microbiology Ecology. 62, 290-302.
Costa R., Gomes, N. C. M., Krögerrecklenfort E. , Opelt K., Berg G., Smalla K. (2007) Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses. In: Citation metrics. Environmental Microbiology. 9, 2260-2273.
SOUSA, O. V., MACRAE, A., MENEZES, F. G. R., GOMES, N. C. M., VIEIRA, R. H. S. F., MENDONÇA-HAGLER, L. C. S. (2006) The impact of shrimp farming effluent on bacterial communities in mangrove waters, Ceará, Brazil. In: Citation metrics. Marine Pollution Bulletin. 52, 1725-1734.
GÖTZ, M., GOMES, N. C. M. (shared first authorship), DRATWINSKI, A., COSTA, R. S., RESENDE, R.P., MENDONÇA-HAGLER, L. C. S., SMALLA, K. (2006) Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community. In: Citation metrics. Fems Microbiology Ecology. 56, 207-218.
COSTA, R., GOMES, N. C. M., PEIXOTO, R., RUMJANEK, N. G., BERG, G., MENDONÇA-HAGLER, L. C. S., SMALLA, K. (2006) Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm. In: Citation metrics. Soil Biology And Biochemistry. 38, 2434–2447
OROS-SICHLER, M., GOMES, N. C. M., NEUBER, G., SMALLA, K. (2006) A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities. In: Citation metrics. Journal Of Microbiological Methods. 65, 63-75.
GOMES, N. C. M., KOSHELEVA, I. A., ABRAHAM, W-R., SMALLA, K. (2005) Effects of the inoculant strain Pseudomonas putida KT2442 (pNF 142) and of naphthalene contamination on the soil bacterial community. In: Citation metrics. Fems Microbiology Ecology. 54, 21-33.
GOMES, N. C. M., FAGBOLA, O., COSTA, R. S., RUMJANEK, N. G., BUCHNER, A., MENDONÇA-HAGLER, L. C S. , SMALLA, K. (2003) Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. In: Citation metrics. . Applied And Environmental Microbiology. 69, 3758-3766.
GOMES, N. C. M., HEUER, H., SCHÖNFELD, J., COSTA, R. S., MENDONÇA-HAGLER, L. C. S., SMALLA, K. , SMALLA, K. (2001) Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. In: Citation metrics. Plant And Soil. 232, 167-180.
ROSA, C. A., HAGLER, A. N., MENDONÇA-HAGLER, L. C., MORAIS, P. B., GOMES, N. C. M., MONTEIRO, R. F. (1992) Clavispora opuntiae and other yeasts associated with the moth Sigelgaita sp. in the cactus Pilosocereus arrabidae of Rio de Janeiro, Brazil. In: Citation metrics. Antonie Van Leeuwenhoek. 62, 267-272.
DIAS, M. A., GOMES, N. C. M., CASTRO, H. F., PIMENTEL, P. F., ROSA, C. A., LINARDI, V. R. (2000) Removal of heavy metals from stainless steel effluents by waste biomass from Brazilian alcoholic beverage production. In: Citation metrics. World Journal Of Microbiology & Biotechnology. 16, 107-108.
GOMES, N. C. M., ROSA, C. A., PIMENTEL, P. F., LINARDI, V. R., MENDONÇA-HAGLER, L. C. S. (1999) Uptake of free and complexed silver ions by yeasts isolated from a gold mining industry in Brazil. In: Citation metrics. Journal Of General And Applied Microbiology. 45, 121-124.
GOMES, N. C. M., FIGUEIRA, M. M., CAMARGOS, E. R. S., MENDONÇA-HAGLER, L. C. S., DIAS, J. C. T., LINARDI, V. R. (1999) Cyano-metal complexes uptake by Aspergillus niger. In: Citation metrics. Biotechnology Letters. 21, 487-490.
BRANDÃO, R. L., CASTRO, L. M., BAMBIRRA, E. A., AMARAL, S. C., FIETTO, L. G., TROPIA, M. J. M., NEVES, M. J., SANTOS, R. G., GOMES, N. C M., NICOLI, J. R. (1998) Intracellular signal triggered by cholera toxin in Saccharomyces boulardii and Saccharomyces cerevisiae. In: Citation metrics. Applied And Environmental Microbiology. 64, 564-568.
GOMES, N. C. M., CAMARGOS, E. R. S., DIAS, J. C. T., LINARDI, V. R. (1998) Gold and silver accumulation by Aspergillus niger from cyanide-containing solution obtained from the gold mining industry. In: Citation metrics. . World Journal Of Microbiology & Biotechnology. 14, 149-149.
LINARDI, V. R., AMÂNCIO, M. C., GOMES, N. C. M. (1995) Maintenance of Rhodotorula rubra isolated from liquid samples of gold mine. In: Citation metrics. Folia Microbiologica - International Journal For Basic, Environmental & Applied Microbiology. 40, 487-489.
COSTA, R. S,, GOMES, N. C. M., MILLING, A., SMALLA, K. (2004) An optmized protocol for simultaneous extraction of DNA and RNA from soils. In: Citation metrics. Brazilian Journal Of Microbiology. 35, 230-234.
SOUZA-FAGUNDES, E. M,, GOMES, N. C. M., ROSA, L. H., SANTOS, M. H., PIMENTEL, P. F. (2004) Thiocyanate degradation by pure and mixed cultures of microorganisms. In: Citation metrics. Brazilian Journal Of Microbiology. 35, 333-336.
GOMES, N. C. M., ROSA, C. A., PIMENTEL, P. F., MENDONÇA-HAGLER, L. C. S. (2002) Uptake of free and complexed silver ions by different strains of Rhodotorula mucilaginosa. In: Citation metrics. Brazilian Journal Of Microbiology. 33, 62-66.
GOMES, N. C. M., MENDONÇA-HAGLER, L. C. S., SAVVAIDIS, I. (1998) Metal bioremediation by microorganisms. In: Citation metrics. Brazilian Journal Of Microbiology. 29, 85-92.
GOMES, N. C. M., LINARDI, V. R. (1996) Removal of gold, silver and copper by living and nonliving fungi from leach liquor obtained from the gold mining industry. In: Citation metrics. Brazilian Journal Of Microbiology. 27, 218-222.
Flocco C.G., Gomes N.C.M., Mac Cormack W., Smalla K. (2009) Occurrence and diversity of naphthalene dioxygenase genes in soil microbial communities from the Maritime Antarctic. In: Citation metrics. Environmental Microbiology. 11, 3, 700-714.
Weinert N., Meincke R., Gottwald C., Heuer H., Gomes N.C.M., Schloter M., Berg G., Smalla K. (2009) Rhizosphere Communities of Genetically Modified Zeaxanthin-Accumulating Potato Plants and Their Parent Cultivar Differ Less Than Those of Different Potato Cultivars. In: Citation metrics. Applied And Environmental Microbiology . 75, 12, 3859-3865.
Almeida A., Cunha Â., Gomes N.C.M., Alves E., Costa L., Faustino M.A.F. (2009) Phage therapy and photodynamic therapy: low environmental impact approaches to inactivate microorganisms in fish farming plants. In: Citation metrics. Marine Drugs. 7, 268-313.
Santos A.L., Mendes C., Gomes N.C.M., Henriques I., Correia A., Almeida A., Cunha A. (2009) Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton. In: Citation metrics. Journal Of Plankton Research. 31, 12, 1545-1555.
Tavares A., Carvalho C.M.B., Faustino M.A., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Alves E., Almeida A. (2010) Antimicrobial Photodynamic Therapy: Study of Bacterial Recovery Viability and Potential Development of Resistance after Treatment. In: Citation metrics. Marine Drugs. 8, 1, 91-105.
Gomes N.C.M., Landi L., Smalla K., Nannipieri P., Brookes P.C., Renella G. (2010) Effects of Cd- and Zn-enriched sewage sludge on soil bacterial and fungal communities. In: Citation metrics. Ecotoxicology And Environmental Safety. 73, 6, 1255-63.
Gomes N.C.M., Cleary D.F.R., Pinto F.N., Egas C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2010) Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves. In: Citation metrics. Plos One. 5, 11,
Santos A.L., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2011) Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: insights from microcosm studies. In: Citation metrics. Aquatic Sciences - Research Across Boundaries. 73, 1, 63-77.
Santos A.L., Lopes S., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2011) Diversity in UV-Sensitivity and Recovery Potential among Bacterioneuston and Bacterioplankton Isolates. In: Citation metrics. Letters In Applied Microbiology. 52, 4, 360-366.
Pereira C., Salvador S., Arrojado C., Silva Y.J., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy. In: Citation metrics. Journal Of Environmental Monitoring. 13, 4, 1053-1058.
Alexandrino M., Macías F., Costa R., Gomes N.C.M., Canário A.V.M., Costa M.C. (2011) A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance. In: Citation metrics. Journal Of Hazardous Materials. 187, 1-3, 362-370.
Baptista I., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation. In: Citation metrics. Aquatic Microbial Ecology. 62, 3, 299-310.
Coelho F.J.R.C., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M., Cunha A. (2011) Exploring hydrocarbonoclastic bacterial ­communities in the estuarine surface microlayer. In: Citation metrics. Aquatic Microbial Ecology. 64, 185-195.
Alves E., Faustino M.A.F., Tome J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2011) Photodynamic antimicrobial chemotherapy in aquaculture: photoinactivation studies of Vibrio fischeri. In: Citation metrics. Plos One. 6, 6, e20970
Oliveira V., Santos A.L., Coelho F., Gomes N.C.M., Silva H., Almeida A., Cunha A. (2010) Effects of monospecific banks of salt marsh vegetationon sediment bacterial communities. In: Citation metrics. Microbial Ecology. 60, 1, 167–179
Santos L.M.P., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2011) Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics. In: Citation metrics. Fems Microbiology Ecology. 77, 3, 636-646.
Costa L., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C, Cavaleiro J.A.S., Faustino M.A.F., Cunha A., Gomes N.C.M., Almeida A. (2011) Evaluation of resistance development and viability recovery by a non-enveloped virus after repeated cycles of aPDT. In: Citation metrics. Antiviral Research. 91, 3, 278-282.
Tavares A., Carvalho C.M.B., Faustino M.A., Neves M.G.P.M.S., Tomé J.P., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Almeida A. (2011) Mechanisms of Photoinactivation of Gram-negative recombinant bioluminescent bacteria by cationic porphyrins. In: Citation metrics. Photochemical & Photobiological Sciences. 10, 10, 1659-1669.
Arrojado C., Tavares C., Pereira C., Tomé J. P. C., Faustino M.A.F., Neves M.G.P., Tomé A.C., Cavaleiro J.A.S., Calado R., Cunha A., Gomes N.C.M., Almeida A. (2011) Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems. In: Citation metrics. Photochemical & Photobiological Sciences. 10, 10, 1691-1700.
Gomes M.C., Woranovicz-Barreira S.M., Tomé J.P.C., Faustino M.A.F., Cavaleiro J.A.S., Gomes N.C.M., Almeida A., Cunha A. (2011) Photodynamic inactivation of Penicillium chrysogenum conidia by cationic porphyrins. In: Citation metrics. Photochemical & Photobiological Sciences. 10, 11, 1735-1743.
Rocha J., Peixe L., Gomes N.C.M., Calado R. (2011) Cnidarians as a Source of New Marine Bioactive Compounds-An Overview of the Last Decade and Future Steps for Bioprospecting. In: Citation metrics. Marine Drugs. 9, 1860-1886;.
Pereira C., Silva Y., Santos A.L., Gomes N.C.M., Cunha A., Almeida A. (2011) Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival, host specificity and effect on bacterial community structure. In: Citation metrics. Marine Drugs. 9, 11, 2236-2255.
Prata C., Ribeiro A., Cunha A., Gomes N.C.M., Almeida A. (2012) Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particles enumeration as a new approach to determine the efficiency of recovery. In: Citation metrics. Journal Of Environmental Monitoring. 14, 1, 64-70.
Cleary D.F.R., Oliveira V., Gomes N.C.M., Pereira A. , Henriques I., Marques B., Almeida A., Cunha A., Correia A., Lillebø A.I. (2012) Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh. In: Citation metrics. Marine Pollution Bulletin. 64, 2, 263-271.
Cleary D.F.R., Smalla K., Mendonça-Hagler L.C.S., Gomes N.C.M. (2012) Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing. In: Citation metrics. Plos One. 7, 1, e29380
Leal M.C., Puga J., Serôdio J., Gomes N.C.M., Calado R. (2012) Trends in the discovery of new marine natural products from invertebrates over the last two decades – where and what are we bioprospecting?. In: Citation metrics. Plos One. 7, 1, e30580
Louvado A., Coelho F.J.R.C., Domingues P., Gomes NCM, Santos A.L., Almeida A., Cunha A . (2012) Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer. In: Citation metrics. Journal Of Microbiology And Biotechnology. 22, 3, 283–291
Oliveira V., Santos A.L., Aguiar C., Santos L., Salvador A.C., Gomes N.C.M., Silva H., Rocha S.M., Almeida A., Cunha A. (2012) Prokaryotes in salt marsh sediments of Ria de Aveiro: effects of halophyte vegetation on abundance and diversity. In: Citation metrics. Estuarine, Coastal And Shelf Science. 110, 61-68.
Pereira J., Carvalho E., Faustino M., Fernandes R., Neves G., Cavaleiro J., Gomes N.C.M., Cunha A., Almeida A., Tomé J. (2012) Phthalocyanine thio-pyridinium derivatives as antibacterial photosensitizers. In: Citation metrics. Photochemistry And Photobiology . 88, 3, 537-547.
Santos A.L., Oliveira V., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2012) Effects of UV-B Radiation on the Structural and Physiological Diversity of Bacterioneuston and Bacterioplankton. In: Citation metrics. Applied And Environmental Microbiology. 78, 6, 2066-2069.
Santos A.L., Lopes S., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia, A., Cunha A.L. (2012) The UV Responses of Bacterioneuston and Bacterioplankton Isolates Depend on the Physiological Condition and Involve a Metabolic Shift. In: Citation metrics. Fems Microbiology Ecology. 80, 3, 646-658.
Nogueira V., Lopes I., Rocha-Santos T., Santos A.L., Rasteiro G.M., Antunes F., Gonçalves F., Soares A.M.V.M., Cunha A., Almeida A., Gomes N.C.M., Pereira R. (2012) Impact of organic and inorganic nanomaterials in the soil microbial community structure. In: Citation metrics. Science Of The Total Environment. 424, 344-350.
Martins P., Lopes M.L, Rodrigues A.M., Gomes N.C.M, Quintino V. (2012) Bacterial communities associated with the decomposition of Fucus vesiculosus in transitional waters. In: Citation metrics. Estuarine Coastal And Shelf Science. 110, 116-124.
Pires A.C.C., Cleary D.F.R., Almeida A., Cunha A., Dealtry S., Mendonca-Hagler L.C.S., Smalla K., Gomes N.C.M. (2012) Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples. In: Citation metrics. Applied And Environmental Microbiology. 78, 16, 5520-5528.
Costa R., Keller T., Gomes N.C.M., Rocha U.N., van Overbeek L., van Elsas D. (2013) Evidence for selective bacterial community structuring in the freshwater sponge Ephydatia fluviatilis. In: Citation metrics. Microbial Ecology. 65, 1, 232-244.
Vieira A., Yolanda S., Cunha A., Gomes N.C.M., Ackermann H., Almeida A. (2012) Phage therapy to control multidrug-resistant Pseudomonas aeruginosa skin infections: in vitro and ex vivo experiments. In: Citation metrics. European Journal Of Clinical Microbiology & Infectious Diseases. 31, 11, 3241-3249.
Domingues P.M., Louvado A., Oliveira V., Coelho F.J., Almeida A., Gomes N.C.M., Cunha A. (2013) Selective cultures for the isolation of biosurfactant producing bacteria: comparison of environmental inocula and hydrophobic carbon sources. In: Citation metrics. Preparative Biochemistry & Biotechnology. 43, 3, 237-55.
Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2012) Contribution of reactive oxygen species to UV-B-induced damage in bacteria. In: Citation metrics. Journal Of Photochemistry And Photobiology B: Biology. 117, 40-46.
Santos A.L., Oliveira V., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2013) Wavelength Dependence of Biological Damage Induced by UV Radiation on Bacteria. In: Citation metrics. Archives Of Microbiology. 195, 1, 63-74.
Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2013) Role of Transition Metals in UV-B Induced Damage to Bacteria. In: Citation metrics. Photochemistry And Photobiology. 89, 3, 640-648.
Gomes N.C.M., Cruz S.C., Pires A.C.C., Gonçalves S.F., Calado R., Cleary D.F.R., Loureiro S. (2013) Richness and composition of sediment bacterial assemblages in an Atlantic port environment. In: Citation metrics. Science Of The Total Environment. 452-453, 172-180.
Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2013) Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate. In: Citation metrics. Photochemical & Photobiological Sciences. 12, 974-986.
Salvador A., Baptista I., Barros A., Gomes N.C.M., Cunha A., Almeida A., Rocha S.M. (2013) Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level in cereal grains and coffee beans?. In: Citation metrics. Plosone. 8, 4, e59338
Gonçalves S.F., Calado R., Gomes N.C.M., Soares A.M.V.M., Loureiro S. (2013) An ecotoxicological analysis of the sediment quality in a European Atlantic harbor emphasizes the current limitations of the Water Framework Directive. In: Citation metrics. Marine Pollutin Bulletin. 72, 1, 197-204.
Pinheiro J.N, Marques C.R., Pinto G., Mestiri A., Gomes N.C.M., Mendo S., Gonçalves F., Rocha-Santos T., Duarte A.C., Römbke J., Sousa J.P., Ksibi M., Haddioui A., Pereira R. (2013) The performance of Fraxinus angustifolia as a helper for metal phytoremediation programs and its relation to the endophytic bacterial communities. In: Citation metrics. Geoderma. 202, 171-182.
Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities. In: Citation metrics. Global Change Biology. 19, 8, 2584-2595.
Cleary D.F.R., Becking L.E., de Voogd N.J., Pires A.C.C., Polónia A.R.M., Egas C., Gomes N.C.M. (2013) Habitat and host related variation in sponge bacterial symbiont communities in Indonesian waters. In: Citation metrics. Fems Microbiology Ecology. 85, 3, 465–482
Alves E., Faustino M. A. F., Tomé J .P.C., Neves M. G. P. S., Tomé A. C., Cavaleiro J. A. S., Cunha A., Newton G., Almeida A. (2013) Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins. In: Citation metrics. Bioorganic & Medicinal Chemistry. 21, 14, 4311-4318.
Alves E., Melo T., Simões C., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S. , Cunha Â., Gomes N.C.M., Domingues P., Domingues M.R.M., Almeida A. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics. In: Citation metrics. Rapid Communications In Mass Spectrometry. 27, 14, 1607-1618.
Ribeiro A., Ramalheira E. , Cunha A., Gomes N.C.M., Almeida A. (2013) Incidence of Rotavirus and Adenovirus: Detection by Molecular and mmunological Methods in Human Faeces. In: Citation metrics. Journal Of Pure And Applied Microbiology. 7, 3,
Mendes C., Santos L., Cunha A., Gomes N.C.M., Almeida A. (2014) Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy. In: Citation metrics. Annals Of Microbiology. 64, 2, 773-778.
Silva Y.J., Costa L., Pereira C., Cunha A., Calado R., Gomes N.C.M., Almeida A. (2014) Influence of environmental variables in the efficiency of phage therapy in aquaculture. In: Citation metrics. Microbial Biotechnology. 7, 5, 401-413.
Martins P., Cleary D.F.R., Pires A.C.C., Rodrigues A.M., Quintino V., Calado R., Gomes N.C.M. (2013) Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis. In: Citation metrics. Plos One. 8, 11,
Santos A.L., Baptista I., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha Â. (2014) Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation. In: Citation metrics. Fems Microbiology Ecology. 87, 2, 517-535.
Silva Y.J., Manco S., Costa R., Rodrigues V., Dias J., Ferreira H., Pousao-Ferreira P., Almeida A., Cunha A., Calado R., Gomes N.C.M. (2015) Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758). In: Citation metrics. Aquaculture Research. 46, 7, 1760-1769.
Gomes N.C.M., Cleary D.F.R., Pires A.C.C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2014) Assessing variation in bacterial, composition between the rhizospheres of two mangrove tree species. In: Citation metrics. Estuarine Coastal And Shelf Science. 139, 40-45.
Santos L., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2014) Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro). In: Citation metrics. Journal Of Plankton Research. 36, 1, 230-242.
Polonia A.R.M., Cleary D.F.R., Duarte L.N., de Voogd N.J., Gomes N.C.M. (2014) Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia. In: Citation metrics. Microbial Ecology. 67, 3, 553-567. 1432-184X.
Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S., Simoes M.M.Q., Smalla K., Cunha A. (2014) Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria. In: Citation metrics. Molecular Ecology. 23, 6, 1392-1404.
Santos L., Vaz L., Gomes N.C.M., Vaz N., Dias J.M., Cunha A., Almeida A. (2014) Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro. In: Citation metrics. Estuarine Coastal And Shelf Science. 138, 107-120.
Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2015) Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes. In: Citation metrics. Antonie Van Leeuwenhoek International Journal Of General And Molecular Microbiology. 107, 3, 821-834.
Baptista I., Santos A.L., Pereira C., Santos L., Cunha A., Gomes N.C.M., Almeida A. (2014) Influence of incubation conditions on bacterial production estimates in an estuarine system. In: Citation metrics. Aquatic Ecology. 48, 3, 327-336.
Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S., Silva H., Cunha A. (2015) Microbe-Assisted Phytoremediation of Hydrocarbons in Estuarine Environments. In: Citation metrics. Microbial Ecology. 69, 1, 1-12.
de Voogd N.J., Cleary D.F.R., Polonia A.R.M., Gomes N.C.M. (2015) Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia. In: Citation metrics. Fems Microbiology Ecology. 91, 4,
Oliveira V., Gomes N.C.M., Cleary D.F.R., Almeida A., Silva A.M.S., Simoes M.M.Q., Silva H., Cunha A. (2014) Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons. In: Citation metrics. Fems Microbiology Ecology. 90, 3, 647-662.
Martins P., Navarro R.V.V., Coelho F.J.R.C., Gomes N.C.M. (2015) Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples. In: Citation metrics. Aquaculture. 435, 137-142.
Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Lillebo A.I., Almeida A., Cunha A., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R., Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities. In: Citation metrics. Global Change Biology. 21, 5, 1871-1886.
Silva Y.J., Costa L., Pereira C., Mateus C., Cunha A., Calado R., Gomes N.C.M., Pardo M.A., Hernandez I., Almeida A. (2014) Phage Therapy as an Approach to Prevent Vibrio anguillarum Infections in Fish Larvae Production. In: Citation metrics. Plos One. 9, 12,
Pegoraro N., Calado R., Duarte L.N., Manco S.C., Fernandes F.J., Polonia A.R.M., Cleary D.E.R., Gomes N.C.M. (2015) Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production. In: Citation metrics. Journal Of Food Protection. 78, 5, 983-989.
Polonia A.R.M., Cleary D.F.R., Freitas R., de Voogd N.J., Gomes N.C.M. (2015) The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment. In: Citation metrics. Molecular Ecology. 24, 2, 409-423.
Rocha J., Coelho F.J.R.C., Peixe L., Gomes N.C.M., Calado R. (2014) Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools. In: Citation metrics. Scientific Reports. 4,
Louvado A., Gomes N.C.M., Simoes M.M.Q., Almeida A., Cleary D.F.R., Cunha A. (2015) Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe-pollutant interactions in a remote environment. In: Citation metrics. Science Of The Total Environment. 526, 312-328.
Cleary D.F.R., de Voogd N.J., Polonia A.R.M., Freitas R., Gomes N.C.M. (2015) Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia. In: Citation metrics. Microbial Ecology. 70, 4, 889-903.
Silva Y.J., Moreirinha C., Pereira C., Costa L., Rocha R.J.M., Cunha A., Gomes N.C.M., Calado R., Almeida A. (2016) Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole (Solea senegalensis) with Phage AS-A. In: Citation metrics. Aquaculture. 450, 225-233.
Polonia A.R.M., Cleary D.F.R., de Voogd N.J., Renema W., Hoeksema B.W., Martins A., Gomes N.C.M. (2015) Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago. In: Citation metrics. Science Of The Total Environment. 537, 139-151.
Oliveira V, Silva A, Marques B, Almeida A, Gomes NCM, Lillebø A, Cunha A (2015) Microcosm assessment of the effect of an acute mercury contamination event on the structure and activity of sediment bacterial communities. In: Citation metrics. Applied Microbiology - Open Access. 1:102,
Oliveira J.M.M., Almeida A.R., Pimentel T., Andrade T.S., Henriques J.F., Soares A.M.V.M., Loureiro S., Gomes N.C.M., Domingues I. (2016) Effect of chemical stress and ultraviolet radiation in the bacterial communities of zebrafish embryos. In: Citation metrics. Environmental Pollution. 208, 626-636.
Coelho F.J.R.C., Santos A.L., Coimbra J., Almeida A., Cunha A., Cleary D.F.R., Calado R., Gomes N.C.M. (2013) Interactive effects of global climate change and pollution on marine microbes: the way ahead. In: Citation metrics. Ecology And Evolution. 3, 6, 1808-1818.
Pimentel T., Rocha R.J.M., Rosa R., Soares A.M.V.M., Gomes N.C.M., Leal M.C., Calado R. (2016) Bacterial communities from corals cultured ex situ remain stable under different light regimes - Relevance for in toto aquaculture. In: Citation metrics. Aquaculture. 450, 258-261.
Polonia A.R.M., Cleary D.F.R., Freitas R., Coelho F.J.R.C., de Voogd N.J., Gomes N.C.M. (2016) Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment. In: Citation metrics. Marine Genomics. 29, 69-80.
Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2016) Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes. In: Citation metrics. Fems Microbiology Ecology. 92, 5,
Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution. In: Citation metrics. Molecular Ecology. 25, 18, 4645-4659.
Cleary D.F.R., Polonia A.R.M., Sousa A.I., Lillebo A.I., Queiroga H., Gomes N.C.M. (2016) Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima. In: Citation metrics. Plant Biology. 18, 5, 824-834.
Coelho F.J.R.C., Louvado A., Domingues P.M., Cleary D.F.R., Ferreira M., Almeida A., Cunha M.R., Cunha A., Gomes N.C.M. (2016) Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz. In: Citation metrics. Scientific Reports. 6, 35272,
Cleary D.F.R., Coelho F.J.R.C., Oliveira V., Gomes N.C.M., Polonia A.R.M. (2017) Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment. In: Citation metrics. Marine Ecology. 38, 2, -e12411.
Polonia A.R.M., Cleary D.F.R., Freitas R., Gomes N.C.M., de Voogd N.J. (2017) Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment. In: Citation metrics. Journal Of Sea Research. 119, 37-53.
Fernandez L., Louvado A., Esteves V.I., Gomes N.C.M., Almeida A., Cunha A. (2017) Biodegradation of 17 beta-estradiol by bacteria isolated from deep sea sediments in aerobic and anaerobic media. In: Citation metrics. Journal Of Hazardous Materials. 323, 359-366.
Oliveira V., Gomes N.C.M., Santos M., Almeida A., Lillebo A.I., Ezequiel J., Serodio J., Silva A.M.S., Simoes M.M.Q., Rocha S.M., Cunha A. (2017) Effects of the Inoculant Strain Pseudomonas sp SPN31 nah (+) and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides. In: Citation metrics. Current Microbiology. 74, 5, 575-583.
Domingues P.M., Almeida A., Leal L.S., Gomes N.C.M., Cunha A. (2017) Bacterial production of biosurfactants under microaerobic and anaerobic conditions. In: Citation metrics. Reviews In Environmental Science And Bio-technology. 16, 2, 239-272.
Coelho F.J.R.C., Cleary D.F.R., Gomes N.C.M., Polonia A.R.M., Huang Y.M., Liu L.L., de Voogd N.J. (2018) Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems. In: Citation metrics. Microbial Ecology. 75, 1, 239-254.
Monteiro M., Seneca J., Torgo L., Cleary D.F.R., Gomes N.C.M., Santoro A.E., Magalhaes C. (2018) Environmental controls on estuarine nitrifying communities along a salinity gradient. In: Citation metrics. Aquatic Microbial Ecology. 80, 2, 167-180.
Boaventura C.M., Coelho F.J.R.C., Martins P.T., Pires A.C.C., Duarte L.N., Uetanabaro A.P.T., Cleary D.F.R., Gomes N.C.M. (2018) Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis. In: Citation metrics. Aquaculture. 490, 321-328.
Martins P., Coelho F.J.R.C., Cleary D.F.R., Pires A.C.C., Marques B., Rodrigues A.M., Quintino V., Gomes N.C.M. (2018) Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system. In: Citation metrics. Aquaculture. 490, 240-250.
Keller-Costa T., Eriksson D., Goncalves J.S., Gomes N.C.M., Lago-Leston A., Costa R. (2017) The gorgonian coral Eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation. In: Citation metrics. Fems Microbiology Ecology. 93, 12,
Gomes N.C.M., Flocco C.G., Costa R., Junca H., Vilchez R., Pieper D.H., Krogerrecklenfort E., Paranhos R., Mendonca-Hagler L.C.S., Smalla K. (2010) Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. In: Citation metrics. Fems Microbiology Ecology. 74, 2, 276-290.
Gomes N.C.M., Flocco C.G., Costa R., Junca H., Vilchez R., Pieper D.H., Krogerrecklenfort E., Paranhos R., Mendonca-Hagler L.C.S., Smalla K. (2010) Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. In: Citation metrics. Fems Microbiology Ecology. 74, 2, 276-290.
Other Papers (2)
Gomes N.C.M., Cleary D.F.R., Calado R., Costa R. (2011) Mangrove bacterial richness. In: Citation metrics. Communicative And Integrative Biology. 4, 4, 1-5.
ACC Pires, DFR Cleary, ARM Polónia, SC Lim, NJ de Voogd, V Oliveira, NCM Gomes Comparison of bacterial communities associated with Xestospongia testudinaria, sediment and seawater in a Singaporean coral reef ecosystem. In: Citation metrics. Journal Of The Marine Biological Association Of The United Kingdom.
Books (1)
Almeida A., Alves F.L., Bernardes C., Dias J.M., Gomes N.C.M., Pereira E., Queiroga H., Serôdio J., Vaz N. (2011) Actas das Jornadas da Ria de Aveiro 2011. In: Citation metrics. Aveiro. Universidade de Aveiro, CESAM – Centro de Estudos do Ambiente e do Mar. 978-972-789-337-9.
Book Chapter (10)
MILLING, A., GOMES, N. C. M., OROS-SICHLER, M., GÖTZ, M., SMALLA, K. (2005) Molecular Microbial Ecology. In: Advancedmethods. (EDS.), Citation metrics. Oxford. Taylor & Francis. 978-1-85996-283-1.
GOMES, N. C. M., COSTA, R. S., SMALLA, K. (2004) Molecular microbial ecology manual. In: Citation metrics. Kluwer Academic Publishers . 978-1-4020-2176-3.
HOLGER, H. , WEILAND, G., SCHÖNFELD, J., SCHÖNWÄLDER, A., GOMES, N. C. M., SMALLA, K. (2001) Environmental Molecular Microbiology: Protocols and Applications. In: Citation metrics. Horizon Scientific Press. 1-898486-29-8.
Binh C.T.T., Heuer H., Gomes N.C.M., Kaupenjohann M., Smalla K. (2010) Manure: Management, Uses and Environmental Impacts. In: Agriculture Issues and Policies. (EDS.), Citation metrics. Nova Science Publishers . 978-1-61668-647-5.
Costa C., Almeida A., Almeida A., Cunha A, Carvalho C.M.B., Cunha A., , Santos L., Tomé J.P.C, Salvador S., Santos L., Faustino M.A.F., Neves M.G.P.M.S., Gomes A., , Tomé A.C., Salvador S, Cavaleiro J.A.S., , Lin Z., Gomes N., , Rainho J.P., Rocha J., Cunha A., Almeida A. (2009) Current Research Topics in Applied Microbiology and Microbial Biotechnology. In: Citation metrics.
Cunha A., Almeida A., Coelho F.J.R.C., Gomes N.C.M., Oliveira V., Santos A.L. (2010) Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology. In: Citation metrics. Badajoz. Formatex. 2,
Santos A.L., Baptista I., Oliveira V., Henriques I, Gomes N.C.M., Almeida A., Correia A., Cunha A. (2010) Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products. In: Citation metrics. Singapore. World Scientific Publishing. 978-981-4322-10-2.
F.J.R.C. Coelho, S. Sousa, L. Santos, A. L. Santos, A. Almeida, N. C. M. Gomes, Â. Cunha (2010) Studies on Environmental Chemistry-Biological Responses to Contaminants. In: Citation metrics. Tokyo. © by TERRAPUB.
A. Louvado , A. L. Santos , F. Coelho, S. Sousa, A. Moreira, F. Gomes, A. Almeida, N. C. M. Gomes, Â. Cunha (2010) Interdisciplinary Studies on Environmental Chemistry-Biological Responses to Contaminants. In: Citation metrics. Tokyo. © by TERRAPUB.
Gomes N.C.M., Cleary D.F.R. (2013) Molecular microbial ecology of the rhizosphere. In: Citation metrics. Toulouse. John Wiley & Sons, Inc. 2, 978-1-118-29616-5.
Thesis (6)
Gomes N.C.M. (1995) Acumulação e recuperação de metais por uma linhagem de Aspergillus niger em solução cianetada de uma mineração de ouro. In: Citation metrics. MSc Thesis.
Gomes N.C.M. (1999) Imobilização de metais por fungos. In: Citation metrics. PhD Thesis.
Pegoraro N. (2012) Caracterização molecular da comunidade bacteriana da pele de bacalhau. In: Citation metrics. MSc Thesis.
Almeida A.R.M. (2013) Combined effects of Ultraviolet radiation and xenobiotics on zebrafish. In: Citation metrics. MSc Thesis.
Ribeiro, Andreia Marques (2009) Epidemiologia molecular de adenovirus: detecção em águas de superfície, em águas residuais e em águas doces. In: Citation metrics. MSc Thesis.
Marques, André Eduardo Baptista de Oliveira (2015) Estudo da variação da abundância e diversidade de procariotas em sedimentos subsuperficiais marinhos. In: Citation metrics. MSc Thesis.
Communications (120)
Coelho F., Sousa S., Santos A.L., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading bacterial community from the Sea Surface Microlayer in an estuarine system. In: Citation metrics.
Coelho F., Moreira A., Simões C., Gomes F., Sousa S., Ramos A., Louvado A., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) Microbiologia Ambiental: potencial biotecnológico da Ria de Aveiro. In: Citation metrics.
Coelho F., Sousa S., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading bacterial community in an estuarine system. Biological Responses to Chemical Contaminants: from molecular to community level. In: Citation metrics.
Prata C. , Ribeiro A. , Cunha A. , Gomes N. C. M. , Almeida A. (2009) Marine surface microlayer as a source of viruses. In: Citation metrics.
Tavares A., Dias S.R.S., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Almeida A. (2009) Photoinactivation mechanism of Gram negative recombinant bioluminescent bacteria by cationic porphyrins. In: Citation metrics.
Tavares A., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Costa L., Almeida A. (2009) Study of the photodynamic inactivation mechanism of a recombinant bioluminescent Escherichia coli. In: Citation metrics.
Tavares A., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J., Carvalho C., Cunha A., Gomes N., Alves E., Almeida A. (2009) Study of the photoinactivation mechanisms of a recombinant bioluminescent Escherichia coli. In: Citation metrics.
Mendes C., Santos A.L., Gomes N.C.M., Cunha A., Almeida A (2009) ROLE OF LYSOGENY AT THE AIR-WATER INTERFACE. In: Citation metrics.
Pereira C, Santos A L, Arrojado C, Santos M, Cunha A, Gomes NCM, Almeida A (2009) Phage effects on the structural bacterial diversity in aquaculture water. In: Citation metrics.
Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B, Tomé J.P.C, Faustino M.A.F, Neves M.G.P.M.S, Tomé A.C, Cavaleiro J.A.S, Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. In: Citation metrics.
Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S, Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. In: Citation metrics.
Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. In: Citation metrics.
Oliveira V., Santos A.L., Coelho F., Aguiar C., Sousa S., Lopes S., Gomes N.C.M, Almeida A., Cunha A. (2009) Bacterial in salt-marsh sediments: Influence of plant colonization on abundance, Physiological diversity and heterotrophic activity (Ria de Aveiro, Portugal). In: Citation metrics.
Oliveira V., Santos A.L., Coelho F., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Structural diversity, physiological profiles and abundance of sulfate-reducing bacteria in bacterial communities of salt-marsh sediments (Ria de Aveiro, Portugal). In: Citation metrics.
Oliveira V., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Património Microbiológico do Sapal da Ria de Aveiro: importância das bactérias para a reciclagem de matéria orgânica. Congresso Internacional de História e Património de Aveiro. In: Citation metrics.
Santos A.L., Baptista I., Oliveira V., Lopes S., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Role of Photochemically-Induced Oxidative Stress in Determining the Biological Effects of UV Radiation in Bacteria. In: Citation metrics.
Pereira C., Santos A. L., Arrojado C., Cunha A., Gomes N.C.M., Newton N.C.M., Almeida A. (2009) Bacterial diversity of aquaculture systems on the Ria de Aveiro estuarine. In: Citation metrics.
Santos A.L., Lopes S., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Resistance to DNA-Damage and UV-Induced Oxidative Stress in Estuarine Bacterioneuston. In: Citation metrics.
Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. In: Citation metrics.
Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Biotechnological Potential of Surfactant Resistant Bacteria from the Surface Microlayer. In: Citation metrics.
Pereira C., Santos A. L., Arrojado C., Cunha A., Gomes N.C.M., Almeida A. (2009) Bacterial diversity of aquaculture systems on the Ria de Aveiro estuarine. In: Citation metrics.
Santos A.L., Lopes S., Alves E., Gomes N.C.M., Correia A., Almeida A., Cunha A. (2009) Involvement of reactive oxygen species in UVR-induced damage of estuarine bacterioneuston isolates. In: Citation metrics.
Santos, A.L., Santos, A.L., Baptista, I., Baptista, I., Lopes, S., Lopes, S., Gomes, N.C.M., Henriques, I., Gomes, N.C.M., Henriques, I., Correia, A., Almeida, A., Almeida, A., Correia, A., Cunha, A., Cunha, A. (2009) Biological and physiological responses of bacterioneuston and bacterioplankton to experimental UV-B exposure. In: Citation metrics.
Santos A.L., Lopes S., João C., Henriques I., Gomes N.C.M., Correia A., Almeida A., Cunha A. (2009) UV Radiation induced inactivation and recovery potential in bacterioneuston isolates. In: Citation metrics.
Santos A.L., Coelho F., Santos L., Mendes C., Louvado A., Sousa S., Lopes S., Moreira A., Gomes F., Henriques I., Almeida A., Correia A., Gomes N.C.M., Cunha A. (2009) Characterization and Biotechnological Potential of Bacterioneuston. In: Citation metrics.
Santos A.L., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Impact of UV-B radiation on estuarine and freshwater microbial communities. In: Citation metrics.
Pires, A.C.C., Santos, A.L., Becking, L.E., Voogd, N.J., Almeida, A., Cunha, A., Calado, R., Cleary, D.F.R., Gomes, N.C.M (2009) Freeze-thaw pre-lysis may not improve microbial DNA extraction from sponges. In: Citation metrics.
Nogueira, V.I.J.O., Pereira, R., Lopes, I., Gonçalves, F., Soares, A.M.V.M., Almeida, A., Gomes, N.C. (2009) The impact of organic and inorganic nanomaterials in the soil microbial community structure. In: Citation metrics.
Gomes, N.C.M., Cleary, D.F.R., Pinto, F.N. , Egas, C., Almeida, A., Cunha, A., Mendonça-Hagler, L.C.S., Smalla, K. (2009) Rhizosphere Microbial Communities in Polluted Urban Mangroves: insights gained by massively parallel pyrosequencing. In: Citation metrics.
Gomes N.C.M. (2008) Mangrove rhizosphere effect on bacterial communities inhabiting intertidal marine sediments. In: Citation metrics.
Gomes N.C.M. (2008) Hydrocarbon pollution in urban mangroves: recent insights gained by molecular analysis of microbial communities. In: Citation metrics.
Alves E., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2010) Antimicrobial photodynamic therapy in aquaculture: effect of physical and chemical properties of water on the photoinactivation of Vibrio fischeri. In: Citation metrics.
Faustino M.A.F., Tavares A., Carvalho C.M.B., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Alves E., Almeida A. (2010) Potential development of bacterial resistance and bacterial viability recovery after photodynamic therapy. In: Citation metrics.
Pereira R., Ksibi M., Haddioui A., Römbke J. , Sousa J.P. , Gonçalves F., Marques C., Frankenbach S., Silva C., Mistiri A. , Hentati O. , Gomes N., Mendo S. (2010) Research on bioremediation of mining areas as part of a NATO Science for Peace Project. In: Citation metrics.
Pires, A.C.C., Cleary, D.F.R., Calado, R., Almeida, A., Cunha, Â., Cavalcanti, S.D.G.A., Smalla, K., Gomes, N.C.M. (2010) Rhizosphere Effect on Archaeal Communities Present in Mangrove Sediment. In: Citation metrics.
Cunha A., Almeida M.A., Coelho F., Framegas D., Gomes N.C.M., Louvado A. (2010) Surfactant-resistant bacteria from the marine surface microlayer. In: Citation metrics.
Costa L. , Lopes J., Cunha A., Gomes N., Carvalho C.M.B., Faustino M.A.F., Neves M.G.P.S, Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S, Almeida A. (2009) Importance of type I and type II pathways on sewage bacteriophage photoinactivation. In: Citation metrics.
Costa L. , Cunha A., Gomes N.C.M., Carvalho C.M.B., Faustino M.A.F., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S, Almeida A. (2009) Involvement of type I and type II mechanisms on MS2 sewage bacteriophage photoinactivation. In: Citation metrics.
Costa L. , Cunha A., Gomes N.C.M., Carvalho C.M.B., Faustino M.A.F., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S, Almeida A. (2009) Effect of different sources and light intensities on T4-like sewage bacteriophage photoinactivation. In: Citation metrics.
Oliveira, J., Gomes, N. C. M., Cunha, A., Almeida, A., Castilho, F., Pereira, M. J. (2009) Bacterial DNA extraction from the blue mussel Mytilus edulis and their surrounding environment – methodology comparison. In: Citation metrics.
Oliveira, J., Cunha, A., Almeida, A., Gomes, N. C. M., Castilho, F., Romalde, J. L., Pereira, M. J. (2009) Assessment of the Microbial Contamination in Bivalves - Future Perspectives. In: Citation metrics.
Oliveira, J., Gomes, N. C. M., Cunha, A., Almeida, A., Castilho, F., Pereira, M. J. (2009) Bacterial DNA extraction from the blue mussel Mytilus edulis and their surrounding environment – methodology comparison. In: Citation metrics.
Marques C.R., Mistiri A., Rodrigues C., Santos C., Pinheiro J., Bouguerra S., Lopes I., Santos B., Pinto G., Haddioui A., Ksibi M., GGonçalves F., Gomes N.C.M, Mendo S., Römbke J., Sousa J.P., Pereira R. (2011) Towards the phytoremediation of mining explorations – a NATO SfP project. In: Citation metrics.
Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria De Aveiro. In: Citation metrics.
Alves E., Arrojado C., Pereira C., Carvalho C., Faustino M., Tomé J., Neves M., Tomé A., Cavaleiro J., Cunha A., Gomes N., Almeida A. (2011) Terapia fotodinâmica antimicrobiana como alternativa aos antibióticos para inactivar bactérias patogénicas em pisciculturas. In: Citation metrics.
Domingues P.M., Louvado A., Coelho F.J.R.C., Santos A.L., Gomes N.C.M., Almeida A., Cunha A. (2011) Isolamento e Caracterização de Bactérias Hidrocarbonoclásticas Produtoras de Biossurfactantes da Ria de Aveiro. In: Citation metrics.
Almeida A., Cunha A. , Gomes N.C.M., Santos L., Mendes C., Pereira C. (2011) Impacto do Virioplâncton sobre a Comunidade Bacteriana da Ria de Aveiro. In: Citation metrics.
Santos L., Gomes N C M., Cunha A., Almeida A. (2011) Variação da abundância e produtividade bacteriana na Ria de Aveiro durante um período de 10 anos (1996-2007). In: Citation metrics.
Santos L., Santos A. L., Coelho F., Gomes N. C. M., Cunha A., Dias J. M. , Almeida A. (2011) Avaliação da hidrodinâmica estuarina na actividade bacteriana na microcamada superficial. In: Citation metrics.
Pereira C., Silva Y. J., Cunha A., Gomes N.C.M., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em Pisciculturas. In: Citation metrics.
Santos L. M. P., Santos A. L., Coelho F., Gomes N., Cunha A., Almeida A. (2011) Different strategies of organic matter decomposition and utilization by bacterioneuston and bacterioplankton in an estuarine system. In: Citation metrics.
Oliveira V., Santos A.L., Aguiar C., Gomes N.C.M., Almeida A., Rocha S., Cunha A. (2011) Bacteria in salt-marsh sediments of Ria de Aveiro: influence of halophyte root exudates on abundance and diversity. In: Citation metrics.
Martins, P., Lopes, M.L., Rodrigues, A.M., Gomes, N., Quintino, V. (2011) Microbial communities associated with the decomposition process of Phragmites australis in transitional systems. In: Citation metrics.
Pereira C., Silva Y.J., Cunha A., Gomes N.C.M., Almeida A. (2011) Bacteriophages with potential for inactivation of fish pathogenic bacteria : survival and effect on bacterial community structure . In: Citation metrics.
Rocha J., Peixe L., Gomes N.C.M., Calado R. (2011) Cnidarians as a source of new marine drugs - most promising compounds in the 21st century and future steps for bioprospecting. In: Citation metrics.
Santos L., Santos A.L., Coelho F., Gomes N.C.M., Cunha A., Dias J.M., Almeida A. (2011) Avaliação da hidrodinâmica estuarina na actividade bacteriana na microcamada superficial. In: Citation metrics.
Santos, A.L., Oliveira, V., Baptista, I., Moreirinha, C., Henriques, I., Gomes, N.C.M., Almeida, A., Delgadillo, I., Correia, A., Cunha, A. (2011) Wavelength dependence of the molecular targets involved in UV-induced damage to aquatic bacteria. In: Citation metrics.
Costa L , Carvalho CMB, Faustino MAF, Tomé JPC, Neves GPMS, Tomé AC, Cavaleiro JAS, Cunha A, Gomes NCM, Almeida A (2011) Behaviour of a non-enveloped virus after ten repeated cycles of aPDT. In: Citation metrics.
Costa L, Carvalho CMB, Faustino MAF, Tomé JPC, Neves GPMS, Tomé AC, Cavaleiro JAS, Cunha A, Gomes NCM, Almeida A (2010) Study of viral resistance following repeated exposure to aPDT and recovery of viability. In: Citation metrics.
Alves A.E.M., Almeida A., Gomes N.C.M., Faustino M.A.F., Neves M.G.P.M.S., Cunha A. (2011) Aplicação de uma porfirina catiónica na inactivação fotodinâmica de um biofilme bacteriano. In: Citation metrics.
Alves E., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2010) Antimicrobial photodynamic therapy in aquaculture: effect of temperature, pH, salinity, oxygen and organic matter on the photoinactivation of Vibrio fischeri. In: Citation metrics.
Alves E., Tomé J., Neves G. , Tomé A., Cavaleiro J.A.S., Faustino A., Cunha A., Gomes N., Almeida A. (2011) Antimicrobial photodynamic therapy: Low environmental impact approach to inactivate pathogenic bacteria in aquaculture systems. In: Citation metrics.
Cunha A., Coelho F.J., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M. (2011) Oil degrading bacteria from the marine surface microlayer. In: Citation metrics.
Cunha A., Louvado A., Domingues P., Coelho F.J.R.C., Santos A.L., Almeida A., Gomes N.C.M. (2011) Surfactant-Resistant and Biosurfactant-Producing Pseudomonads from the Estuarine Surface Microlayer. In: Citation metrics.
Gomes C.F.A.C., Woranovicz-Barreira S.M., Faustino M.A.F., Fernandes R., Neves M.G.P.M.S., Tomé A.C., Gomes N.C.M., Almeida A., Cavaleiro J.A.S., Cunha A., Tomé J.P.C. (2011) Photodynamic Inactivation of Penicillium chrysogenum Conidia by Cationic Porphyrins. In: Citation metrics.
Marques CR, Marques C.R., Mestiri A., Mistiri A, Rodrigues C., Rodrigues C, Santos C., Pinheiro J, Pinheiro J., Bouguerra S, Bouguerra S., Lopes I, Lopes I., Santos B, Santos B., Pinto G, Pinto G., Haddioui A, Ksibi M, Haddioui A., Gonçalves F, Ksibi M., Gomes NCM, Gonçalves F., Gomes NCM, Mendo S, Römbke J, Mendo S., Römbke J., Sousa JP, Pereira R, Sousa J.P., Pereira R. (2011) Towards the phytoremediation of mining explorations – a NATO SfP project. In: Citation metrics.
Reis A., Fidalgo L., Almeida A., Gomes N.C.M., Cunha A. , Saraiva J. (2011) Desenvolvimento de resistência à inactivação por alta pressão em Salmonella typhimurium. In: Citation metrics.
Silva Y., Calado R., Gomes N.C.M., Cunha A., Almeida A. (2011) Application of a rapid method for bacteria detection, in order to evaluate the efficiency of phage therapy as an alternative to inactivate pathogenic bacteria in fish farms. In: Citation metrics.
Silva Y.J., Calado R.J., Gomes N.C.M., Cunha A., Almeida A. (2011) Aplicação de um método rápido de detecção bacteriana para avaliar a eficácia da terapia fágica como alternativa para inactivar bactérias patogénicas em pisciculturas. In: Citation metrics.
Pinto A.G.M., Gomes N.C.M., Santos L., Cunha A., Santos E.B.H., Almeida A. (2011) Composição da matéria orgânica dissolvida na água da Ria de Aveiro: efeito da irradiação solar. In: Citation metrics.
Pereira C., Silva Y.J., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2012) Phage Therapy. Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival and effect on bacterial community structure. In: Citation metrics.
Pereira C., Silva Y. J., Cunha A., Gomes N.C.M., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em Pisciculturas. In: Citation metrics.
Gonçalves S., Pereira C.G., Manco S., Gonzalez-Rey F., Calado R., Cravo A., Gomes N.C.M., Duarte D., Soares A.M.V.M., Loureiro S., Bebianno M.J. (2012) Water Quality in Harbors - the PORTONOVO project in Portugal. In: Citation metrics.
Leal M.C., Puga J., Gomes N.C.M., Serôdio J., Calado R. (2011) New Marine Drugs from Marine Invertebrates in the 21st century - Where and What are we Bioprospecting?. In: Citation metrics.
Coelho F.J.R.C., Rocha R. J.M., Pires A.C.C., Castanheira J., Costa R., Lillebø A.I., Almeida A., Cunha Â., Calado R., Cleary D., Gomes N.C.M. (2012) Marine experimental life support system for microbial communities. In: Citation metrics.
Silva Y.J., Carla Pereira, Ângela Cunha, Newton C.M. Gomes, Adelaide Almeida (2012) Evaluating seasonal dynamics of bacterial communities in a marine fish aquaculture: a preliminary study before applying phage therapy. In: Citation metrics.
Silva Y.J., Manco S., Costa R., Rodrigues V., Ferreira H., Pousão-Ferreira P., Almeida M.A., Cunha A., Calado R., Gomes N.C.M., Dias J. (2012) Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata. In: Citation metrics.
Silva Y.J., Calado R., Gomes N.C.M., Cunha A., Almeida M.A. (2012) Application of a rapid method for bacteria detection, in order to evaluate the effect of different cultural conditions on the efficacy of phage therapy as an alternative to inactivate pathogenic bacteria in fish farms. In: Citation metrics.
Rocha R.J.M., Serôdio J., Gomes N.C.M., Furtado J., Cartaxana P., Calado R. (2010) The effect of light in the photosynthetic pigments and zooxanthellae density of cultivated ahermatypic coral Sarcophyton sp. In: Citation metrics.
Rocha R.J.M., Serôdio J., Gomes N.C.M., Cartaxana P., Calado R. (2011) The effects of light in the photobiology of cultured monoclonal fragments of the ahermatypic coral Sinularia flexibilis. In: Citation metrics.
Rocha R.J.M., Cartaxana P., Gomes N.C.M., Calado R. , Serôdio J. (2012) Sarcophyton glaucum and Sinularia flexibilis photosynthesis under different light regimes. In: Citation metrics.
Rocha R.J.M., Serôdio J., Gomes N.C.M., Cartaxana P., Calado R. (2012) The effect of light photosynthetically active radiation in the photosynthetic performance of cultured soft coral Sinularia flexibilis and Sarcophyton glaucum. In: Citation metrics.
Bouguerra, S., Hentati, O., Marques, C.R., Sousa, J.P., Nogueira, I.V., Gomes, N.C., Mendo, S., Gonçalves F., Ksibi, M., Roembke, J., Haddioui, A., Pereira R. (2012) The impact of Contamination with phosphogypsum on the structural and functional diversity of the soil microbial community Sfax, Tunisia. In: Citation metrics.
Pinheiro, J.N., Marques, C.R., Pinto, G., Amira, M., Mendo, S., Gomes, N.C., Gonçalves, F., Rocha-Santos, T., Duarte, A.C., Roembke, J., Sousa, J.P., Ksibi, M., Haddioui, A., Pereira, R. (2013) Selection of arboreous species for the phytoremediation of metal contaminated soils: Fraxinus angustifolia. In: Citation metrics.
Calado R., Leal M.C., Eiras F.R., Neto G., Queiroga H., Cleary D.F.R., Rotllant G., Guerao G., Gomes N.C.M., Silva J.M., Giménez L., Anger K., Pechenik J.A., Nejstgaard J.C., Frischer M.E. (2013) Project NO RESET - Shedding light over the trophic regimes of brachyuran crab larvae supplied to coastal habitats before and during upwelling events. In: Citation metrics.
Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Almeida A., Cunha Â., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Ocean acidification and oil contamination have a synergistic effect on microbial community composition. Abstract Book: 2231. In: Citation metrics.
Santos L., Batista I., Santos A.L., Coelho F.J.R.C., Gomes, N., Dias, J.M., Cunha, Â., Almeida, A. (2013) Heterotrophic activity in the surface microlayer of an estuarine system (Ria de Aveiro). Abstract Book: 2265. In: Citation metrics.
Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A,, Lillebø A.I., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Synergistic effects of global climate change and oil pollution on estuarine sediment bacterial communities. Abstract Book: 2005. In: Citation metrics.
Pereira C, Baptista I, Silva AP, Cunha A, Gomes NCM, Romalde JL, Nunes ML, Almeida A (2013) Seasonal variation of bacterial community composition of bivalve molluscs harvesting waters. In: Citation metrics.
Almeida A, Pereira C, Silva YJ, Cunha A, Gomes NCM (2012) Preliminary studies of the applicability of phage therapy with new isolated bacteriophages in marine fish aquaculture. In: Citation metrics.
Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S, Simões M.M.Q., Smalla K., Cunha A. (2013) Characterization of endophytic community structure and functional diversity associated with two salt marshes plants (Halimione portulacoides and Sarcocornia perennis). In: Citation metrics.
Silva A.P., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2013) Effect of culture medium in the production of bacterial rhamnolipids. In: Citation metrics.
Alves E., Faustino M.A.F., Tomé J.P.C., Neves M.G. P. M. S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2013) Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins. In: Citation metrics.
Alves E., Melo T., Simões C., Faustino M.A.F., Tomé J.P.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Domingues P., Domingues M.R.M., Almeida A., Neves M.G.P.M.S. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics. In: Citation metrics.
Silva YJ, Pereira C, Costa L, Cunha A, Gomes NCM, Almeida A (2013) Influence of organic matter content in the inactivation of the fish pathogenic Aeromonas salmonicida by a new isolated bacteriophage. In: Citation metrics.
Silva YJ, Costa L, Pereira C, Calado R, Gomes NCM, Cunha A, Almeida A (2013) Application of a rapid method for bacteria detection, in order to evaluate the effect of different environmental variables in the efficiency of phage therapy in fish farms. In: Citation metrics.
Baptista I., Salvador A., Petronilho S., Stein P., Ferreira J., Costa V., Gomes N., Cunha A., Almeida A., Rocha S.R. (2013) Food Flow Extract - Flow Extraction of Microbiological Contaminants. In: Citation metrics.
Santos L, Vaz L, Gomes NMC, Vaz N, Dias JM, Cunha A, Almeida A (2013) Impact of freshwater inflow on bacterial abundance and activity in the estuarine sytem Ria de Aveiro. In: Citation metrics.
Santos L., Gomes N.G.M., Santos E.B.H. , Dias J.M., Cunha A., Almeida A. (2013) Photochemical and microbial alterations of DOM spectroscopic properties in the estuarine system Ria de Aveiro. In: Citation metrics.
Pinto A.G.M., Cunha A., Gomes NMC, Santos E.B.H., Almeida A. (2013) Effect of solar irradiation on heterotrophic bacteria in the marine environment. In: Citation metrics.
Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Calado R., Cleary D.R.F., Gomes N.C.M. (2013) Synergistic impact of global climate change and oil pollution on estuarine sediment communities simulated in laboratory microcosms. In: Citation metrics.
Santos L., Vaz L., Gomes N.C.M., Vaz N., Dias J.M., Cunha A., Almeida A. (2013) Impact Freshwater Inflow on Bacterial Abundance and Activity in the Estuarine System Ria de Aveiro. In: Citation metrics.
Alves E., Melo T., Santos N., Simões C., Maciel E., Dória M.L., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Helguero L., Domingues P., Domingues M.R.M., Almeida A. (2014) Photodynamic oxidation of bacterial membrane phospholipids: a new insight provided by lipidomics. In: Citation metrics.
Polónia ARM, Cleary DRF, Duarte LN, de Voogd NJ, Gomes NCM Composition of Archaea in seawater, sediment and sponges in the Kepulauan Seribu reef system, Indonesia. In: Citation metrics.
Almeida, R., Pimentel, T., Monteiro, M., Oliveira, J., Andrade, T., Henriques, J., Soares, A.M.V.M., Loureiro, S., Gomes, N. and Domingues, I. (2014) Effects of combined stress to zebrafish embryos microbiome and biochemical markers. In: Citation metrics.
Almeida, R., Oliveira, J. M. M., Pimentel, T., Monteiro, M., Andrade, T. S., Henriques, J. F., Soares, A. M. V. M. Loureiro, S., Gomes, N.C.M. and Domingues, I. (2015) Effects of combined stress in the microbiome and biochemical markers of zebrafish embryos. . In: Citation metrics.
de Figueiredo D.R., Cleary D., Saraiva P., Gomes N., Gonçalves A.M.M., Reboleira A.S., Gonçalves F., Oliveira J., Condesso de Melo M.T., Abrantes N. (2014) Metagenomic overview of bacterioplankton diversity from Estremenho karst massif aquifer (Portugal). In: Citation metrics.
Oliveira, V., Gomes, N.C.M., Cleary, D.F.R., Almeida, A., Silva, A., Simões, M.M.Q., Silva, H., Cunha, A. In depth molecular analysis of bacterial communities in salt marshes chronically exposed to oil hydrocarbons. In: Citation metrics.
Silva, Y. J., Pereira, C., Costa, L., Santos, L., Cunha, A., Gomes, N.C.M., Calado, R., Almeida, A. (2015) Phage therapy as an approach to prevent Aeromonas salmonicida infections in juvenile sole fish. In: Citation metrics.
Rita Almeida, Tânia Pimentel, Susana Loureiro, Newton Gomes, Amadeu M.V.M. Soares and Inês Domingues (2014) Combined effects of Ultraviolet radiation and xenobiotics on zebrafish embryos - changes in bacterial communities. In: Citation metrics.
Bouguerra S. , Hentati O., Marques C.R., Sousa J.P., Nogueira V.I., Gomes N.C, Mendo S., Gonçalves F., Ksibi M., Römbke J., Haddioui A., Pereira R. (2012) ) The impact of contamination by phophogypsum on the structural and functional diversity of the soil microbial community in a deposition area (Sfax, Tunisia). In: Citation metrics.
Bouguerra S. , Hentati O., Marques C.R., Sousa J.P., Nogueira V.I., Gomes N.C, Mendo S., Gonçalves F., Ksibi M., Römbke J., Haddioui A., Pereira R. (2012) The impact of contamination by phophogypsum on the structural and functional diversity of the soil microbial community in a deposition area (Sfax, Tunisia). (Poster presentation). In: Citation metrics.
Cunha M.R. , Hilário A. , Vieira R.P. , Magalhães V. , Adão H. , Aranda da Silva A. , Génio L. , Gomes N. , Pinheiro L. , Ravara A. , Rodrigues C. , Terrinha P. , Scholz F. , Hensen C. (2012) A possible link between hydrothermal vents and cold seeps – new mud volcanoes along deep-reaching transform faults in the SW Iberian Margin (NE Atlantic). In: Citation metrics.
Silva Y.J., Calado R., Gomes N.C.M., Cunha A., Almeida M.A. (2012) Genotoxic Activity of Sulforaphane in an Osteosarcoma In vitro model. In: Citation metrics.
Coelho FJRC, Cleary DFR, Ferreira M, Gomes NCM (2015) Response of sediment archaeal communities to ocean acidification and oil pollution. In: Citation metrics.
Oliveira V., Pires A.C.C., Cleary D.F.R., Pólonia A.R.M., Lim S.C., de Voogd N.J., Gomes N.C.M. (2017) Bacterial communities of Xestospongia testudinaria, sediment and water in a singaporean coral reef ecosystem. In: Citation metrics.
Domingues, P.M., Almeida, A., Serafim, L.S., Gomes, N.C.M., Cunha, A. (2016) Response of bacterial communities from deep-sea active and inactive mud volcanoes to the presence of crude oil in nitrate-reduction conditions. . In: Citation metrics.
Silva, Y., Pereira, C., Costa, L., Santos, L., Cunha, A., Gomes, N.C.M., Calado, R., Almeida, A. (2015) Phage therapy as an approach to prevent Aeromonas salmonicida infections in juvenile sole fish. In: Citation metrics.
Louvado, A., Almeida, A., Simões, M.M. Q., Gomes, N.C.M., Cunha, A. (2015) Biodegradation of PAHs and biosurfactant production in deep sea bacteria. In: Citation metrics.
Sena, C., Azevedo, M.R., Ribeiro, S., Gomes, N., Coelho, F., Marques, A., Cunha, A., Almeida, A., Pinheiro, L.M. & Expedition 351 Scientists. (2015) Water-rock interactions and geomicrobiology in a sedimentary basin that records large volcanic eruptions – IODP Expedition 351. In: Citation metrics.
Other Publications (13)
ROSA, L. H., GOMES, N. C. M., PIMENTEL, P. F., FIGUEIRA, M. M., MENDONÇA-HAGLER, L. C. S. (1999) Biosorption of free and complexed cadmium ions by Aspergillus niger. In: International Biohydrometallurgy Symposium - IBS´99, 1999, San Lorenzo de El Escorial. Biohydrometallurgy and the environment toward the mining of the 21st century. Amsterdam : Elsevier, p. 513-519. In: Citation metrics.
NIUA, H., GOMES, N. C. M., VOLESKY, B. (1999) Enhancement of gold-cyanide biosorption by L-cysteine. In: International Biohydrometallurgy Symposium - IBS´99, 1999, San Lorenzo de El Escorial. Biohydrometallurgy and the environment toward the mining of the 21st century. Amsterdam : Elsevier. p. 493-502. In: Citation metrics.
ROSA, L. H., GOMES, N. C. M., FAGUNDES, E. M. S., SANTOS, M. H., DIAS, J. C. T., PIMENTEL, P. F. (1999) Degradation of thiocyanate by immobilized cells of mixed and pure cultures. In: International Biohydrometallurgy Symposium - IBS´99, 1999, San Lorenzo de El Escorial. Biohydrometallurgy and the environment toward the mining of the 21st century. Amsterdam : Elsevier. p. 819-823. In: Citation metrics.
GOMES, N. C. M., ROSA, C. A., LINARDI, V. R., PIMENTEL, P. F., ROCHA, O. G. F., SANTOS, M. H., SILVA, W. F. R., COIMBRA, R. S., MENDONÇA-HAGLER, L. C. S. (1996) Preliminary studies on yeast strains tolerant to high concentrations of silver dicyanide. In: Environmental Biotechnology, 1996, Palmerston North. Environmental Biotechnology, v. 1. p. 155-161. In: Citation metrics.
GOMES, N. C. M., DIAS, J. C. T., LINARDI, V. R., MENDONÇA-HAGLER, L. C S. (1995) Preliminary studies on metal and cyanide removal by Aspergillus niger. Chile. Biohydrometallurgical Processing, Vol.2, Proc. Internat. Biohydromet. Symp., Jerez, CA, Vargas, T, Toledo, H & Wiertz, JV (eds.) Univ. Chile, Santiago, Chile, p. p. 401-405. In: Citation metrics.
Louvado A., Santos A. L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N. C. M., Cunha Â. (2010) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer, Interdisciplinary Studies on Environmental Chemistry-Biological Responses to Contaminants, Eds., N. Hamamura, S. Suzuki, S. Mendo, C. M. Barroso, H. Iwata and S. Tanabe, pp. 89-95. © by TERRAPUB, Tokyo, 2010. In: Citation metrics.
Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria de Aveiro. Actas das Jornadas da Ria de Aveiro. 295-301. In: Citation metrics.
Alves E., Arrojado C., Pereira C., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2011) Terapia Fotodinâmica Antimicrobiana como Alternativa aos Antibióticos para Inactivar Bactérias Patogénicas em Águas de Piscicultura. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp. In: Citation metrics.
Alves E., Tomé J., Neves G., Tomé A., Cavaleiro J., Faustino A., Cunha Â., Gomes N., Almeida A. (2011) Antimicrobial photodynamic therapy: Low environmental impact approach to inactivate pathogenic bacteria in aquaculture systems. Research Day@UA. University of Aveiro. 8th June 2011, Aveiro, Portugal. In: Citation metrics.
Domingues P.M., Louvado A., Coelho F.J.R.C., Santos A.L., Gomes N.C.M., Almeida A., Cunha A. (2011) Isolamento e Caracterização de Bactérias Produtoras de Biossurfactantes da Ria de Aveiro. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.). Actas das Jornadas da Ria de Aveiro. CESAM, Universidade de Aveiro. Aveiro. Portugal. 214-218. In: Citation metrics.
Almeida A., Cunha C. , Gomes N.C.M., Santos L., Mendes C. , Pereira C. (2011) Impacto do Virioplâncton sobre a Comunidade Bacteriana da Ria de Aveiro. Jornadas da Ria de Aveiro (2011). In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp. In: Citation metrics.
Santos L., Gomes N. C. M., Cunha A., Almeida A. (2011) Variação da abundância e produtividade bacteriana na Ria de Aveiro durante um período de 10 anos (1996-2007) In: Almeida A. AFL, Bernardes C., Dias J. M., Gomes N. C. M., Pereira E., Queiroga H., Serôdio J. e Vaz N. (ed) Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar, Aveiro, p 205-213. In: Citation metrics.
Pereira C., Silva Y.J., Gomes N.C.M., Cunha A., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em pisciculturas.In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. pp. 340-348 . In: Citation metrics.

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