Almeida J.F., Marques M., Oliveira V., Egas C., Mil-Homens D., Viana R., Cleary D.F.R., Huang Y.M., Fialho A.M., Teixeira M.C., Gomes N.C.M., Costa R., Keller-Costa T. (2023) Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities Against Human Pathogens.
Marine Drugs, 21
, (1), 34.
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Boaventura J., Caetano T., Mendo S., Cleary DFR., Gomes NCM., Oliveira V (2022) Draft Genome Sequence of Vibrio mediterranei Strain CyArs1.
Microbiology Resource Announcements,
e00155-22.
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Cleary, D.F.R., Polónia, A.R.M., Swierts, T., Coelho, F.J.R.C., de Voogd, N.J., Gomes, N.C.M. (2022) Spatial and environmental variables structure sponge symbiont communities.
Molecular Ecology, 31
, (19), 4932-4948.
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Sousa, J. M. G., Louvado, A., Coelho, F. J. R. C., Oliveira, V., Oliveira, H., Cleary, D. F. R., Gomes, N. C. M. (2022) In vitro study of the modulatory effects of heat-killed bacterial biomass on aquaculture bacterioplankton communities.
Scientific Reports,
1-13.
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Oliveira V., Polónia A.R.M., Cleary D.F.R., Huang Y.u.s.h.e.n.g. .M., de Voogd N.J., Keller-Costa T., Costa R., Gomes N.C.M. (2022) Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts.
Microbiological Research, 265
.
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Ferreira M.R., Cleary D.F.R., Bat N.K., Polónia A.R., Gomes, N.C.M. (2022) Assessing the core microbial symbionts of jellyfish in Indonesian and Vietnamese marine lakes.
Journal Of The Marine Biological Association Of The United Kingdom,
486-494.
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Stuij, T. M., Cleary, D.F.R., Gomes, N.C.M., Mehrotra, R., Visser, P. M., Speksnijder, A. G., Hoeksema, B. W. (2022) High diversity of benthic cyanobacterial mats on coral reefs of Koh Tao, Gulf of Thailand.
Coral Reefs,
1-15.
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Barcelos e Ramos J., Ribeiro S.C., Schulz K.G., Coelho F.J.R.C., Oliveira V., Cunha A., Gomes N.C.M., Brownlee C., Passow U., de Azevedo E.B. (2022) Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations.
Microorganisms, 10
, (12), 2461.
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Nata’ala, M.K., Avila Santos, A.P., Coelho Kasmanas, J., Bartholomäus, A., Saraiva, J.P., Godinho Silva, S., Keller-Costa, T., Costa, R., Gomes, N.C.M., Ponce de Leon Ferreira de Carvalho, A.C. and Stadler, P.F. (2022) MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.
Environmental Microbiome,
1-10.
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Oliveira V., Polonia A.R.M., Cleary D.F.R., Huang Y.S.M., de Voogd N.J., da Rocha U.N., Gomes N.C.M. (2021) Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification.
MOLECULAR ECOLOGY RESOURCES, 21
, (1), 110-121.
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Borges N., Keller-Costa T., Sanches-Fernandes G.M.M., Louvado A., Gomes N.C.M., Costa R. (2021) Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps.
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 9, 2021, 9
423-452.
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Louvado, A, Cleary, DFR, Pereira, LF, Coelho, FJRC, Pousao-Ferreira, P, Ozorio, ROA , Gomes, NCM (2021) Humic substances modulate fish bacterial communities in a marine recirculating aquaculture system.
Aquaculture, 544
.
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Ferreira M.R.S., Cleary D.F.R., Coelho F.J.R.C., Gomes N.C.M., Huang Y.M., Polonia A.R.M., de Voogd N.J. (2020) Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor.
ANNALS OF MICROBIOLOGY, 70
, (1), .
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Domingues P.M., Oliveira V., Serafim L.S., Gomes N.C.M., Cunha A. (2020) Biosurfactant Production in Sub-Oxic Conditions Detected in Hydrocarbon-Degrading Isolates from Marine and Estuarine Sediments.
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 17
, (5), .
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Louvado A., Coelho F.J.R.C., Palma M., Tavares L.C., Ozorio R.O.A., Magnoni L., Viegas I., Gomes N.C.M. (2020) Effect of glycerol feed-supplementation on seabass metabolism and gut microbiota.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,
.
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Pires, ACC, Oliveira, V, Cleary, DFR, Polónia AR, Coelho, FJRC, Waheed, Z, de Voogd, NJ, Gomes, NCM (2020) Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia.
Marine Biology Research, 16
729-743.
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Cleary D.F.R., Ferreira M.R.S., Bat N.K., Polonia A.R.M., Gomes N.C.M., de Voogd N.J. (2020) Bacterial composition of sponges, sediment and seawater in enclosed and open marine lakes in Ha Long Bay Vietnam.
MARINE BIOLOGY RESEARCH, 16
, (1), 18-31.
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Pires A.C.C., Cleary D.F.R., Polonia A.R.M., Lim S.C., De Voogd N.J., Oliveira V., Gomes N.C.M. (2019) Comparison of bacterial communities associated with Xestospongia testudinaria, sediment and seawater in a Singaporean coral reef ecosystem.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, 99
, (2), 331-342.
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Duarte L.N., Coelho F.J.R.C., Cleary D.F.R., Bonifacio D., Martins P., Gomes N.C.M. (2019) Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): A seasonal survey.
AQUACULTURE, 503
59-69.
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Cleary D.F.R., Swierts T., Coelho F.J.R.C., Polonia A.R.M., Huang Y.S.M., Ferreira M.R.S., Putchakarn S., Carvalheiro L., van der Ent E., Ueng J.P., Gomes N.C.M., de Voogd N.J. (2019) The sponge microbiome within the greater coral reef microbial metacommunity.
NATURE COMMUNICATIONS, 10
.
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Cleary D.F.R., Gomes N.C.M. (2019) Baseline information on prokaryotic and microeukaryotic plankton communities inside and outside of Indonesian marine lakes.
JOURNAL OF SEA RESEARCH, 148
23-32.
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Duarte L.N., Coelho F.J.R.C., Oliveira V., Cleary D.F.R., Martins P., Gomes N.C.M. (2019) Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production.
PLOS ONE, 14
, (1), .
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Cleary D.F.R., Polonia A.R.M., Huang Y.M., Putchakarn S., Gomes N.C.M., de Voogd N.J. (2019) A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs.
FEMS MICROBIOLOGY ECOLOGY, 95
, (12), .
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Louvado A., Coelho F.J.R.C., Oliveira V., Gomes H., Cleary D.F.R., Simoes M.M.Q., Cunha A., Gomes N.C.M. (2019) Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment.
JOURNAL OF APPLIED MICROBIOLOGY, 127
, (1), 134-149.
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Coelho F.J.R.C., Cleary D.F.R., Gomes N.C.M., Polonia A.R.M., Huang Y.M., Liu L.L., de Voogd N.J. (2018) Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.
MICROBIAL ECOLOGY, 75
, (1), 239-254.
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Monteiro M., Seneca J., Torgo L., Cleary D.F.R., Gomes N.C.M., Santoro A.E., Magalhaes C. (2018) Environmental controls on estuarine nitrifying communities along a salinity gradient.
AQUATIC MICROBIAL ECOLOGY, 80
, (2), 167-180.
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Cleary D.F.R., Polonia A.R.M., Becking L.E., de Voogd N.J., Purwanto ., Gomes H., Gomes N.C.M. (2018) Compositional analysis of bacterial communities in seawater, sediment and high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIODIVERSITY, 48
, (4), 1889-1901.
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Dealtry S., Ghizelini A.M., Mendonca-Hagler L.C.S., Chaloub R.M., Reinert F., de Campos T.M.P., Gomes N.C.M., Smalla K. (2018) Petroleum contamination and bioaugmentation in bacterial rhizosphere communities from Avicennia schaueriana.
BRAZILIAN JOURNAL OF MICROBIOLOGY, 49
, (4), 757-769.
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Boaventura C.M., Coelho F.J.R.C., Martins P.T., Pires A.C.C., Duarte L.N., Uetanabaro A.P.T., Cleary D.F.R., Gomes N.C.M. (2018) Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis.
AQUACULTURE, 490
321-328.
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Martins P., Coelho F.J.R.C., Cleary D.F.R., Pires A.C.C., Marques B., Rodrigues A.M., Quintino V., Gomes N.C.M. (2018) Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system.
AQUACULTURE, 490
240-250.
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Louvado A., Coelho F.J.R.C., Gomes H., Cleary D.F.R., Cunha A., Gomes N.C.M. (2018) Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 25
, (32), 32756-32766.
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Polonia A.R.M., Cleary D.F.R., Coelho F.J.R.D., Becking L.E., de Voogd N.J., Toha A.H.A., Gomes N.C.M. (2018) Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia.
MARINE BIOLOGY RESEARCH, 14
, (6), 537-550.
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Cleary D.F.R., Coelho F.J.R.C., Oliveira V., Gomes N.C.M., Polonia A.R.M. (2017) Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment.
Marine Ecology, 38
, (2), -e12411.
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Polonia A.R.M., Cleary D.F.R., Freitas R., Gomes N.C.M., de Voogd N.J. (2017) Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment.
JOURNAL OF SEA RESEARCH, 119
37-53.
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Oliveira V., Gomes N.C.M., Santos M., Almeida A., Lillebo A.I., Ezequiel J., Serodio J., Silva A.M.S., Simoes M.M.Q., Rocha S.M., Cunha A. (2017) Effects of the Inoculant Strain Pseudomonas sp SPN31 nah (+) and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides.
CURRENT MICROBIOLOGY, 74
, (5), 575-583.
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Domingues P.M., Almeida A., Leal L.S., Gomes N.C.M., Cunha A. (2017) Bacterial production of biosurfactants under microaerobic and anaerobic conditions.
REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY, 16
, (2), 239-272.
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Keller-Costa T., Eriksson D., Goncalves J.S., Gomes N.C.M., Lago-Leston A., Costa R. (2017) The gorgonian coral Eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation.
FEMS MICROBIOLOGY ECOLOGY, 93
, (12), .
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Fernandez L., Louvado A., Esteves V.I., Gomes N.C.M., Almeida A., Cunha A. (2017) Biodegradation of 17 beta-estradiol by bacteria isolated from deep sea sediments in aerobic and anaerobic media.
JOURNAL OF HAZARDOUS MATERIALS, 323
359-366.
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Oliveira J.M.M., Almeida A.R., Pimentel T., Andrade T.S., Henriques J.F., Soares A.M.V.M., Loureiro S., Gomes N.C.M., Domingues I. (2016) Effect of chemical stress and ultraviolet radiation in the bacterial communities of zebrafish embryos.
ENVIRONMENTAL POLLUTION, 208
626-636.
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Polonia A.R.M., Cleary D.F.R., Freitas R., Coelho F.J.R.C., de Voogd N.J., Gomes N.C.M. (2016) Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment.
MARINE GENOMICS, 29
69-80.
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Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2016) Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes.
FEMS MICROBIOLOGY ECOLOGY, 92
, (5), .
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Coelho F.J.R.C., Cleary D.F.R., Costa R., Ferreira M., Polonia A.R.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Gomes N.C.M. (2016) Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution.
MOLECULAR ECOLOGY, 25
, (18), 4645-4659.
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Cleary D.F.R., Polonia A.R.M., Sousa A.I., Lillebo A.I., Queiroga H., Gomes N.C.M. (2016) Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima.
PLANT BIOLOGY, 18
, (5), 824-834.
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Coelho F.J.R.C., Louvado A., Domingues P.M., Cleary D.F.R., Ferreira M., Almeida A., Cunha M.R., Cunha A., Gomes N.C.M. (2016) Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz.
SCIENTIFIC REPORTS, 6
, (35272), .
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Pimentel T., Rocha R.J.M., Rosa R., Soares A.M.V.M., Gomes N.C.M., Leal M.C., Calado R. (2016) Bacterial communities from corals cultured ex situ remain stable under different light regimes - Relevance for in toto aquaculture.
AQUACULTURE, 450
258-261.
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Silva Y.J., Moreirinha C., Pereira C., Costa L., Rocha R.J.M., Cunha A., Gomes N.C.M., Calado R., Almeida A. (2016) Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole (Solea senegalensis) with Phage AS-A.
AQUACULTURE, 450
225-233.
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Silva Y.J., Manco S., Costa R., Rodrigues V., Dias J., Ferreira H., Pousao-Ferreira P., Almeida A., Cunha A., Calado R., Gomes N.C.M. (2015) Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758).
AQUACULTURE RESEARCH, 46
, (7), 1760-1769.
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Cleary D.F.R., Becking L.E., Polonia A.R.M., Freitas R.M., Gomes N.C.M. (2015) Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 107
, (3), 821-834.
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Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S., Silva H., Cunha A. (2015) Microbe-Assisted Phytoremediation of Hydrocarbons in Estuarine Environments.
MICROBIAL ECOLOGY, 69
, (1), 1-12.
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de Voogd N.J., Cleary D.F.R., Polonia A.R.M., Gomes N.C.M. (2015) Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.
FEMS MICROBIOLOGY ECOLOGY, 91
, (4), .
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Martins P., Navarro R.V.V., Coelho F.J.R.C., Gomes N.C.M. (2015) Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples.
AQUACULTURE, 435
137-142.
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Coelho F.J.R.C., Cleary D.F.R., Rocha R.J.M., Calado R., Castanheira J.M., Rocha S.M., Silva A.M.S., Simoes M.M.Q., Oliveira V., Lillebo A.I., Almeida A., Cunha A., Lopes I., Ribeiro R., Moreira-Santos M., Marques C.R., Costa R., Pereira R., Gomes N.C.M. (2015) Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.
GLOBAL CHANGE BIOLOGY, 21
, (5), 1871-1886.
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Pegoraro N., Calado R., Duarte L.N., Manco S.C., Fernandes F.J., Polonia A.R.M., Cleary D.E.R., Gomes N.C.M. (2015) Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production.
JOURNAL OF FOOD PROTECTION, 78
, (5), 983-989.
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Polonia A.R.M., Cleary D.F.R., Freitas R., de Voogd N.J., Gomes N.C.M. (2015) The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment.
MOLECULAR ECOLOGY, 24
, (2), 409-423.
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Louvado A., Gomes N.C.M., Simoes M.M.Q., Almeida A., Cleary D.F.R., Cunha A. (2015) Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe-pollutant interactions in a remote environment.
SCIENCE OF THE TOTAL ENVIRONMENT, 526
312-328.
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Cleary D.F.R., de Voogd N.J., Polonia A.R.M., Freitas R., Gomes N.C.M. (2015) Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.
MICROBIAL ECOLOGY, 70
, (4), 889-903.
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Polonia A.R.M., Cleary D.F.R., de Voogd N.J., Renema W., Hoeksema B.W., Martins A., Gomes N.C.M. (2015) Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago.
SCIENCE OF THE TOTAL ENVIRONMENT, 537
139-151.
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Oliveira V, Silva A, Marques B, Almeida A, Gomes NCM, Lillebø A, Cunha A (2015) Microcosm assessment of the effect of an acute mercury contamination event on the structure and activity of sediment bacterial communities.
Applied Microbiology - Open Access, 1:102
.
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Mendes C., Santos L., Cunha A., Gomes N.C.M., Almeida A. (2014) Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy.
Annals Of Microbiology, 64
, (2), 773-778.
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Silva Y.J., Costa L., Pereira C., Cunha A., Calado R., Gomes N.C.M., Almeida A. (2014) Influence of environmental variables in the efficiency of phage therapy in aquaculture.
MICROBIAL BIOTECHNOLOGY, 7
, (5), 401-413.
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Santos A.L., Baptista I., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha Â. (2014) Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation.
FEMS Microbiology Ecology, 87
, (2), 517-535.
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Gomes N.C.M., Cleary D.F.R., Pires A.C.C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2014) Assessing variation in bacterial, composition between the rhizospheres of two mangrove tree species.
Estuarine Coastal And Shelf Science, 139
40-45.
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Santos L., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2014) Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro).
Journal Of Plankton Research, 36
, (1), 230-242.
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Polonia A.R.M., Cleary D.F.R., Duarte L.N., de Voogd N.J., Gomes N.C.M. (2014) Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia.
Microbial Ecology, 67
, (3), 553-567. 1432-184X.
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Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S., Simoes M.M.Q., Smalla K., Cunha A. (2014) Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria.
Molecular Ecology, 23
, (6), 1392-1404.
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Santos L., Vaz L., Gomes N.C.M., Vaz N., Dias J.M., Cunha A., Almeida A. (2014) Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro.
Estuarine Coastal And Shelf Science, 138
107-120.
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Baptista I., Santos A.L., Pereira C., Santos L., Cunha A., Gomes N.C.M., Almeida A. (2014) Influence of incubation conditions on bacterial production estimates in an estuarine system.
Aquatic Ecology, 48
, (3), 327-336.
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Oliveira V., Gomes N.C.M., Cleary D.F.R., Almeida A., Silva A.M.S., Simoes M.M.Q., Silva H., Cunha A. (2014) Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons.
FEMS MICROBIOLOGY ECOLOGY, 90
, (3), 647-662.
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Silva Y.J., Costa L., Pereira C., Mateus C., Cunha A., Calado R., Gomes N.C.M., Pardo M.A., Hernandez I., Almeida A. (2014) Phage Therapy as an Approach to Prevent Vibrio anguillarum Infections in Fish Larvae Production.
PLOS ONE, 9
, (12), .
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Rocha J., Coelho F.J.R.C., Peixe L., Gomes N.C.M., Calado R. (2014) Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.
SCIENTIFIC REPORTS, 4
.
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Costa R., Keller T., Gomes N.C.M., Rocha U.N., van Overbeek L., van Elsas D. (2013) Evidence for selective bacterial community structuring in the freshwater sponge Ephydatia fluviatilis.
Microbial Ecology, 65
, (1), 232-244.
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Domingues P.M., Louvado A., Oliveira V., Coelho F.J., Almeida A., Gomes N.C.M., Cunha A. (2013) Selective cultures for the isolation of biosurfactant producing bacteria: comparison of environmental inocula and hydrophobic carbon sources.
Preparative Biochemistry & Biotechnology, 43
, (3), 237-55.
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Santos A.L., Oliveira V., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2013) Wavelength Dependence of Biological Damage Induced by UV Radiation on Bacteria.
Archives Of Microbiology, 195
, (1), 63-74.
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Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2013) Role of Transition Metals in UV-B Induced Damage to Bacteria.
Photochemistry And Photobiology, 89
, (3), 640-648.
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Gomes N.C.M., Cruz S.C., Pires A.C.C., Gonçalves S.F., Calado R., Cleary D.F.R., Loureiro S. (2013) Richness and composition of sediment bacterial assemblages in an Atlantic port environment.
Science Of The Total Environment, 452-453
172-180.
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Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2013) Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate.
Photochemical & Photobiological Sciences, 12
974-986.
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Salvador A., Baptista I., Barros A., Gomes N.C.M., Cunha A., Almeida A., Rocha S.M. (2013) Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level in cereal grains and coffee beans?.
PlosOne, 8
, (4), e59338.
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Gonçalves S.F., Calado R., Gomes N.C.M., Soares A.M.V.M., Loureiro S. (2013) An ecotoxicological analysis of the sediment quality in a European Atlantic harbor emphasizes the current limitations of the Water Framework Directive.
Marine Pollutin Bulletin, 72
, (1), 197-204.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Ladeiro B., Castanheira J.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Ribeiro R., Pereira R., Lopes I., Marques C., Moreira-Santos M., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.
GLOBAL CHANGE BIOLOGY, 19
, (8), 2584-2595.
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Cleary D.F.R., Becking L.E., de Voogd N.J., Pires A.C.C., Polónia A.R.M., Egas C., Gomes N.C.M. (2013) Habitat and host related variation in sponge bacterial symbiont communities in Indonesian waters.
FEMS Microbiology Ecology, 85
, (3), 465–482.
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Pinheiro J.N, Marques C.R., Pinto G., Mestiri A., Gomes N.C.M., Mendo S., Gonçalves F., Rocha-Santos T., Duarte A.C., Römbke J., Sousa J.P., Ksibi M., Haddioui A., Pereira R. (2013) The performance of Fraxinus angustifolia as a helper for metal phytoremediation programs and its relation to the endophytic bacterial communities.
Geoderma, 202
171-182.
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Alves E., Faustino M. A. F., Tomé J .P.C., Neves M. G. P. S., Tomé A. C., Cavaleiro J. A. S., Cunha A., Newton G., Almeida A. (2013) Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins.
Bioorganic & Medicinal Chemistry, 21
, (14), 4311-4318.
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Alves E., Melo T., Simões C., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S. , Cunha Â., Gomes N.C.M., Domingues P., Domingues M.R.M., Almeida A. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics.
Rapid Communications In Mass Spectrometry, 27
, (14), 1607-1618.
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Ribeiro A., Ramalheira E. , Cunha A., Gomes N.C.M., Almeida A. (2013) Incidence of Rotavirus and Adenovirus: Detection by Molecular and mmunological Methods in Human Faeces.
Journal Of Pure And Applied Microbiology, 7
, (3), .
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Martins P., Cleary D.F.R., Pires A.C.C., Rodrigues A.M., Quintino V., Calado R., Gomes N.C.M. (2013) Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis.
PLOS ONE, 8
, (11), .
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Coelho F.J.R.C., Santos A.L., Coimbra J., Almeida A., Cunha A., Cleary D.F.R., Calado R., Gomes N.C.M. (2013) Interactive effects of global climate change and pollution on marine microbes: the way ahead.
ECOLOGY AND EVOLUTION, 3
, (6), 1808-1818.
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Prata C., Ribeiro A., Cunha A., Gomes N.C.M., Almeida A. (2012) Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particles enumeration as a new approach to determine the efficiency of recovery.
Journal Of Environmental Monitoring, 14
, (1), 64-70.
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Cleary D.F.R., Oliveira V., Gomes N.C.M., Pereira A. , Henriques I., Marques B., Almeida A., Cunha A., Correia A., Lillebø A.I. (2012) Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh.
Marine Pollution Bulletin, 64
, (2), 263-271.
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Cleary D.F.R., Smalla K., Mendonça-Hagler L.C.S., Gomes N.C.M. (2012) Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing.
PLoS ONE, 7
, (1), e29380.
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Leal M.C., Puga J., Serôdio J., Gomes N.C.M., Calado R. (2012) Trends in the discovery of new marine natural products from invertebrates over the last two decades – where and what are we bioprospecting?.
PLoS ONE, 7
, (1), e30580.
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Louvado A., Coelho F.J.R.C., Domingues P., Gomes NCM, Santos A.L., Almeida A., Cunha A . (2012) Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer.
Journal Of Microbiology And Biotechnology, 22
, (3), 283–291.
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Oliveira V., Santos A.L., Aguiar C., Santos L., Salvador A.C., Gomes N.C.M., Silva H., Rocha S.M., Almeida A., Cunha A. (2012) Prokaryotes in salt marsh sediments of Ria de Aveiro: effects of halophyte vegetation on abundance and diversity.
Estuarine, Coastal And Shelf Science, 110
61-68.
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Pereira J., Carvalho E., Faustino M., Fernandes R., Neves G., Cavaleiro J., Gomes N.C.M., Cunha A., Almeida A., Tomé J. (2012) Phthalocyanine thio-pyridinium derivatives as antibacterial photosensitizers.
Photochemistry And Photobiology , 88
, (3), 537-547.
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Santos A.L., Oliveira V., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2012) Effects of UV-B Radiation on the Structural and Physiological Diversity of Bacterioneuston and Bacterioplankton.
Applied And Environmental Microbiology, 78
, (6), 2066-2069.
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Santos A.L., Lopes S., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia, A., Cunha A.L. (2012) The UV Responses of Bacterioneuston and Bacterioplankton Isolates Depend on the Physiological Condition and Involve a Metabolic Shift.
FEMS Microbiology Ecology, 80
, (3), 646-658.
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Nogueira V., Lopes I., Rocha-Santos T., Santos A.L., Rasteiro G.M., Antunes F., Gonçalves F., Soares A.M.V.M., Cunha A., Almeida A., Gomes N.C.M., Pereira R. (2012) Impact of organic and inorganic nanomaterials in the soil microbial community structure.
Science Of The Total Environment, 424
344-350.
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Martins P., Lopes M.L, Rodrigues A.M., Gomes N.C.M, Quintino V. (2012) Bacterial communities associated with the decomposition of Fucus vesiculosus in transitional waters.
Estuarine Coastal And Shelf Science, 110
116-124.
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Pires A.C.C., Cleary D.F.R., Almeida A., Cunha A., Dealtry S., Mendonca-Hagler L.C.S., Smalla K., Gomes N.C.M. (2012) Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78
, (16), 5520-5528.
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Vieira A., Yolanda S., Cunha A., Gomes N.C.M., Ackermann H., Almeida A. (2012) Phage therapy to control multidrug-resistant Pseudomonas aeruginosa skin infections: in vitro and ex vivo experiments.
European Journal Of Clinical Microbiology & Infectious Diseases, 31
, (11), 3241-3249.
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Santos A.L., Gomes N.C.M., Henriques I., Almeida A., Correia A., Cunha A. (2012) Contribution of reactive oxygen species to UV-B-induced damage in bacteria.
Journal Of Photochemistry And Photobiology B: Biology, 117
40-46.
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Santos A.L., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2011) Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: insights from microcosm studies.
Aquatic Sciences - Research Across Boundaries, 73
, (1), 63-77.
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Santos A.L., Lopes S., Baptista I., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2011) Diversity in UV-Sensitivity and Recovery Potential among Bacterioneuston and Bacterioplankton Isolates.
Letters In Applied Microbiology, 52
, (4), 360-366.
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Pereira C., Salvador S., Arrojado C., Silva Y.J., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy.
Journal Of Environmental Monitoring, 13
, (4), 1053-1058.
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Alexandrino M., Macías F., Costa R., Gomes N.C.M., Canário A.V.M., Costa M.C. (2011) A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance.
Journal Of Hazardous Materials, 187
, (1-3), 362-370.
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Baptista I., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2011) Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation.
Aquatic Microbial Ecology, 62
, (3), 299-310.
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Coelho F.J.R.C., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M., Cunha A. (2011) Exploring hydrocarbonoclastic bacterial communities in the estuarine surface microlayer.
Aquatic Microbial Ecology,
, (64), 185-195.
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Alves E., Faustino M.A.F., Tome J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2011) Photodynamic antimicrobial chemotherapy in aquaculture: photoinactivation studies of Vibrio fischeri.
PLoS One, 6
, (6), e20970.
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Santos L.M.P., Santos A.L., Coelho F.J.R.C., Gomes N.C.M., Dias J.M., Cunha A., Almeida A. (2011) Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics.
FEMS Microbiology Ecology, 77
, (3), 636-646.
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Costa L., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C, Cavaleiro J.A.S., Faustino M.A.F., Cunha A., Gomes N.C.M., Almeida A. (2011) Evaluation of resistance development and viability recovery by a non-enveloped virus after repeated cycles of aPDT.
Antiviral Research, 91
, (3), 278-282.
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Gomes M.C., Woranovicz-Barreira S.M., Tomé J.P.C., Faustino M.A.F., Cavaleiro J.A.S., Gomes N.C.M., Almeida A., Cunha A. (2011) Photodynamic inactivation of Penicillium chrysogenum conidia by cationic porphyrins.
Photochemical & Photobiological Sciences, 10
, (11), 1735-1743.
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Tavares A., Carvalho C.M.B., Faustino M.A., Neves M.G.P.M.S., Tomé J.P., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Almeida A. (2011) Mechanisms of Photoinactivation of Gram-negative recombinant bioluminescent bacteria by cationic porphyrins.
Photochemical & Photobiological Sciences, 10
, (10), 1659-1669.
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Arrojado C., Tavares C., Pereira C., Tomé J. P. C., Faustino M.A.F., Neves M.G.P., Tomé A.C., Cavaleiro J.A.S., Calado R., Cunha A., Gomes N.C.M., Almeida A. (2011) Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems.
Photochemical & Photobiological Sciences, 10
, (10), 1691-1700.
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Rocha J., Peixe L., Gomes N.C.M., Calado R. (2011) Cnidarians as a Source of New Marine Bioactive Compounds-An Overview of the Last Decade and Future Steps for Bioprospecting.
MARINE DRUGS, 9
, (10), 1860-1886.
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Pereira C., Silva Y., Santos A.L., Gomes N.C.M., Cunha A., Almeida A. (2011) Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival, host specificity and effect on bacterial community structure.
Marine Drugs, 9
, (11), 2236-2255.
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Tavares A., Carvalho C.M.B., Faustino M.A., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Alves E., Almeida A. (2010) Antimicrobial Photodynamic Therapy: Study of Bacterial Recovery Viability and Potential Development of Resistance after Treatment.
Marine Drugs, 8
, (1), 91-105.
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Gomes N.C.M., Landi L., Smalla K., Nannipieri P., Brookes P.C., Renella G. (2010) Effects of Cd- and Zn-enriched sewage sludge on soil bacterial and fungal communities.
Ecotoxicology And Environmental Safety, 73
, (6), 1255-63.
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Gomes N.C.M., Cleary D.F.R., Pinto F.N., Egas C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. (2010) Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves.
PLOS ONE, 5
, (11), .
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Oliveira V., Santos A.L., Coelho F., Gomes N.C.M., Silva H., Almeida A., Cunha A. (2010) Effects of monospecific banks of salt marsh vegetationon sediment bacterial communities.
Microbial Ecology, 60
, (1), 167–179.
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Gomes N.C.M., Flocco C.G., Costa R., Junca H., Vilchez R., Pieper D.H., Krogerrecklenfort E., Paranhos R., Mendonca-Hagler L.C.S., Smalla K. (2010) Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia.
FEMS MICROBIOLOGY ECOLOGY, 74
, (2), 276-290.
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Gomes N.C.M., Flocco C.G., Costa R., Junca H., Vilchez R., Pieper D.H., Krogerrecklenfort E., Paranhos R., Mendonca-Hagler L.C.S., Smalla K. (2010) Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia.
FEMS MICROBIOLOGY ECOLOGY, 74
, (2), 276-290.
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Weinert N., Meincke R., Gottwald C., Heuer H., Gomes N.C.M., Schloter M., Berg G., Smalla K. (2009) Rhizosphere Communities of Genetically Modified Zeaxanthin-Accumulating Potato Plants and Their Parent Cultivar Differ Less Than Those of Different Potato Cultivars.
Applied And Environmental Microbiology , 75
, (12), 3859-3865.
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Almeida A., Cunha Â., Gomes N.C.M., Alves E., Costa L., Faustino M.A.F. (2009) Phage therapy and photodynamic therapy: low environmental impact approaches to inactivate microorganisms in fish farming plants.
Marine Drugs, 7
268-313.
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Santos A.L., Mendes C., Gomes N.C.M., Henriques I., Correia A., Almeida A., Cunha A. (2009) Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton.
Journal Of Plankton Research, 31
, (12), 1545-1555.
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Flocco C.G., Gomes N.C.M., Mac Cormack W., Smalla K. (2009) Occurrence and diversity of naphthalene dioxygenase genes in soil microbial communities from the Maritime Antarctic.
ENVIRONMENTAL MICROBIOLOGY, 11
, (3), 700-714.
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GOMES N. C. M., BORGES L., PARANHOS R., PINTO F. N., MENDONÇA-HAGLER L. C. S., SMALLA K. (2008) Exploring the diversity of bacterial communities in sediments of urban mangrove forests.
FEMS Microbiology Ecology, 66
, (1), 96-109.
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Gomes N.C.M., Borges L., Paranhos R., Pinto F. N., Krögerrecklenfort E. , Mendonça-Hagler L.C.S., Smalla K. (2007) Diversity of ndo genes in mangrove sediments exposed to different sources of PAH pollution.
Applied And Environmental Microbiology, 73
7392-7399.
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Bihn C. T., Heur H., Gomes N. C. M., Kotzerke A., Fulle, M., Wilke, B. M., Schloter M., Smalla K. (2007) Short-term effects of amoxicillin on bacterial communities in manured soil.
FEMS Microbiology Ecology, 62
290-302.
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Costa R., Gomes, N. C. M., Krögerrecklenfort E. , Opelt K., Berg G., Smalla K. (2007) Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses.
Environmental Microbiology, 9
2260-2273.
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SOUSA, O. V., MACRAE, A., MENEZES, F. G. R., GOMES, N. C. M., VIEIRA, R. H. S. F., MENDONÇA-HAGLER, L. C. S. (2006) The impact of shrimp farming effluent on bacterial communities in mangrove waters, Ceará, Brazil.
Marine Pollution Bulletin, 52
1725-1734.
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GÖTZ, M., GOMES, N. C. M. (shared first authorship), DRATWINSKI, A., COSTA, R. S., RESENDE, R.P., MENDONÇA-HAGLER, L. C. S., SMALLA, K. (2006) Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community.
FEMS Microbiology Ecology, 56
207-218.
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COSTA, R., GOMES, N. C. M., PEIXOTO, R., RUMJANEK, N. G., BERG, G., MENDONÇA-HAGLER, L. C. S., SMALLA, K. (2006) Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm.
Soil Biology And Biochemistry, 38
2434–2447.
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OROS-SICHLER, M., GOMES, N. C. M., NEUBER, G., SMALLA, K. (2006) A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities.
Journal Of Microbiological Methods, 65
63-75.
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GOMES, N. C. M., KOSHELEVA, I. A., ABRAHAM, W-R., SMALLA, K. (2005) Effects of the inoculant strain Pseudomonas putida KT2442 (pNF 142) and of naphthalene contamination on the soil bacterial community.
FEMS Microbiology Ecology, 54
21-33.
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COSTA, R. S,, GOMES, N. C. M., MILLING, A., SMALLA, K. (2004) An optmized protocol for simultaneous extraction of DNA and RNA from soils.
Brazilian Journal Of Microbiology, 35
230-234.
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SOUZA-FAGUNDES, E. M,, GOMES, N. C. M., ROSA, L. H., SANTOS, M. H., PIMENTEL, P. F. (2004) Thiocyanate degradation by pure and mixed cultures of microorganisms.
Brazilian Journal Of Microbiology, 35
333-336.
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GOMES, N. C. M., FAGBOLA, O., COSTA, R. S., RUMJANEK, N. G., BUCHNER, A., MENDONÇA-HAGLER, L. C S. , SMALLA, K. (2003) Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics.
. Applied And Environmental Microbiology, 69
3758-3766.
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GOMES, N. C. M., ROSA, C. A., PIMENTEL, P. F., MENDONÇA-HAGLER, L. C. S. (2002) Uptake of free and complexed silver ions by different strains of Rhodotorula mucilaginosa.
Brazilian Journal Of Microbiology, 33
62-66.
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GOMES, N. C. M., HEUER, H., SCHÖNFELD, J., COSTA, R. S., MENDONÇA-HAGLER, L. C. S., SMALLA, K. , SMALLA, K. (2001) Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis.
Plant And Soil, 232
167-180.
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DIAS, M. A., GOMES, N. C. M., CASTRO, H. F., PIMENTEL, P. F., ROSA, C. A., LINARDI, V. R. (2000) Removal of heavy metals from stainless steel effluents by waste biomass from Brazilian alcoholic beverage production.
World Journal Of Microbiology & Biotechnology, 16
107-108.
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GOMES, N. C. M., ROSA, C. A., PIMENTEL, P. F., LINARDI, V. R., MENDONÇA-HAGLER, L. C. S. (1999) Uptake of free and complexed silver ions by yeasts isolated from a gold mining industry in Brazil.
Journal Of General And Applied Microbiology, 45
121-124.
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GOMES, N. C. M., FIGUEIRA, M. M., CAMARGOS, E. R. S., MENDONÇA-HAGLER, L. C. S., DIAS, J. C. T., LINARDI, V. R. (1999) Cyano-metal complexes uptake by Aspergillus niger.
Biotechnology Letters, 21
487-490.
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BRANDÃO, R. L., CASTRO, L. M., BAMBIRRA, E. A., AMARAL, S. C., FIETTO, L. G., TROPIA, M. J. M., NEVES, M. J., SANTOS, R. G., GOMES, N. C M., NICOLI, J. R. (1998) Intracellular signal triggered by cholera toxin in Saccharomyces boulardii and Saccharomyces cerevisiae.
Applied And Environmental Microbiology, 64
564-568.
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GOMES, N. C. M., CAMARGOS, E. R. S., DIAS, J. C. T., LINARDI, V. R. (1998) Gold and silver accumulation by Aspergillus niger from cyanide-containing solution obtained from the gold mining industry.
. World Journal Of Microbiology & Biotechnology, 14
149-149.
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GOMES, N. C. M., MENDONÇA-HAGLER, L. C. S., SAVVAIDIS, I. (1998) Metal bioremediation by microorganisms.
Brazilian Journal Of Microbiology, 29
85-92.
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GOMES, N. C. M., LINARDI, V. R. (1996) Removal of gold, silver and copper by living and nonliving fungi from leach liquor obtained from the gold mining industry.
Brazilian Journal Of Microbiology, 27
218-222.
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LINARDI, V. R., AMÂNCIO, M. C., GOMES, N. C. M. (1995) Maintenance of Rhodotorula rubra isolated from liquid samples of gold mine.
Folia Microbiologica - International Journal For Basic, Environmental & Applied Microbiology, 40
487-489.
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ROSA, C. A., HAGLER, A. N., MENDONÇA-HAGLER, L. C., MORAIS, P. B., GOMES, N. C. M., MONTEIRO, R. F. (1992) Clavispora opuntiae and other yeasts associated with the moth Sigelgaita sp. in the cactus Pilosocereus arrabidae of Rio de Janeiro, Brazil.
Antonie Van Leeuwenhoek, 62
267-272.
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de Figueiredo D.R., Lopes A.R., Pereira M.J., Polónia A.R.M., Castro B.B., Gonçalves F., Gomes N.C.M., Cleary D.F.R. (2022) Bacterioplankton Community Shifts during a Spring Bloom of Aphanizomenon gracile and Sphaerospermopsis aphanizomenoides at a Temperate Shallow Lake.
Hydrobiology, 1
, (4), 499-517.
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Gomes N.C.M., Cleary D.F.R., Calado R., Costa R. (2011) Mangrove bacterial richness.
Communicative And Integrative Biology, 4
, (4), 1-5.
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Almeida A., Alves F.L., Bernardes C., Dias J.M., Gomes N.C.M., Pereira E., Queiroga H., Serôdio J., Vaz N. (2011) Actas das Jornadas da Ria de Aveiro 2011. Aveiro. Universidade de Aveiro, CESAM – Centro de Estudos do Ambiente e do Mar.
. 978-972-789-337-9.
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Gomes N.C.M., Cleary D.F.R. (2013) Impact of mangrove roots on bacterial composition. In: Molecular microbial ecology of the rhizosphere. Toulouse. John Wiley & Sons, Inc.
2
. 978-1-118-29616-5.
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Binh C.T.T., Heuer H., Gomes N.C.M., Kaupenjohann M., Smalla K. (2010) A Similar Bacterial Community Structure and a High Abundance of sul Genes Observed in Field-Scale Manures . In: Manure: Management, Uses and Environmental Impacts. Agriculture Issues and Policies. (EDS.), Nova Science Publishers .
. 978-1-61668-647-5.
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Cunha A., Almeida A., Coelho F.J.R.C., Gomes N.C.M., Oliveira V., Santos A.L. (2010) Bacterial Extracellular Enzymatic Activity in Globally Changing Aquatic Ecosystems. In: Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology. Badajoz. Formatex.
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Santos A.L., Baptista I., Oliveira V., Henriques I, Gomes N.C.M., Almeida A., Correia A., Cunha A. (2010) Oxidative stress induced by photochemical reactions occuring at the surface microlayer. In: Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products. Singapore. World Scientific Publishing.
. 978-981-4322-10-2.
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F.J.R.C. Coelho, S. Sousa, L. Santos, A. L. Santos, A. Almeida, N. C. M. Gomes, Â. Cunha (2010) PAH Degrading Bacteria in an Estuarine System. In: Interdisciplinary Studies on Environmental Chemistry Vol.3 - Biological Responses to Contaminants: From Molecular to Community Level. N. Hamamura ,S. Suzuki , S. Mendo, C.M. Barroso, H. Iwata, S.Tanabe . (EDS.), Tokyo. © by TERRAPUB.
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A. Louvado , A. L. Santos , F. Coelho, S. Sousa, A. Moreira, F. Gomes, A. Almeida, N. C. M. Gomes, Â. Cunha (2010) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. In: Interdisciplinary Studies on Environmental Chemistry Vol.3 - Biological Responses to Contaminants: From Molecular to Community Level. N. Hamamura ,S. Suzuki , S. Mendo, C.M. Barroso, H. Iwata, S.Tanabe . (EDS.), Tokyo. © by TERRAPUB.
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Costa C., Almeida A., Almeida A., Cunha A, Carvalho C.M.B., Cunha A., , Santos L., Tomé J.P.C, Salvador S., Santos L., Faustino M.A.F., Neves M.G.P.M.S., Gomes A., , Tomé A.C., Salvador S, Cavaleiro J.A.S., , Lin Z., Gomes N., , Rainho J.P., Rocha J., Cunha A., Almeida A. (2009) Evaluation of the impact of two aquaculture systems on bacterial communities of the estuarine system Ria de Aveiro. . In: Current Research Topics in Applied Microbiology and Microbial Biotechnology.
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MILLING, A., GOMES, N. C. M., OROS-SICHLER, M., GÖTZ, M., SMALLA, K. (2005) Nucleic acid extraction from environmental samples. In: Molecular Microbial Ecology. Advancedmethods. (EDS.), Oxford. Taylor & Francis.
. 978-1-85996-283-1.
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GOMES, N. C. M., COSTA, R. S., SMALLA, K. (2004) Rapid simultaneous extraction of DNA and RNA from bulk and rhizosphere soil. In: Molecular microbial ecology manual. Kluwer Academic Publishers .
. 978-1-4020-2176-3.
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HOLGER, H. , WEILAND, G., SCHÖNFELD, J., SCHÖNWÄLDER, A., GOMES, N. C. M., SMALLA, K. (2001) Bacterial Community Profiling Using DGGE or TGGE Analysis. In: Environmental Molecular Microbiology: Protocols and Applications. Horizon Scientific Press.
. 1-898486-29-8.
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Duarte, Leticia Novaes (2018) Molecular Microbiology in Aquaculture: the search for a healthy microbial community. PhD Thesis.
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Rui Jorge Sousa Ferraz (2017) Aptâmeros para desenvolvimento de recetores de sabor artificiais para a avaliação do sabor amargo.
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Marques, André Eduardo Baptista de Oliveira (2015) Estudo da variação da abundância e diversidade de procariotas em sedimentos subsuperficiais marinhos. MSc Thesis.
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Almeida A.R.M. (2013) Combined effects of Ultraviolet radiation and xenobiotics on zebrafish. MSc Thesis.
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Coelho F.J.R.C (2013) Oil hydrocarbon-bacteria interactions in coastal environments. PhD Thesis.
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Pegoraro N. (2012) Caracterização molecular da comunidade bacteriana da pele de bacalhau. MSc Thesis.
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Ribeiro, Andreia Marques (2009) Epidemiologia molecular de adenovirus: detecção em águas de superfície, em águas residuais e em águas doces. MSc Thesis.
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Gomes N.C.M. (1999) Imobilização de metais por fungos. PhD Thesis.
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Gomes N.C.M. (1995) Acumulação e recuperação de metais por uma linhagem de Aspergillus niger em solução cianetada de uma mineração de ouro. MSc Thesis.
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Oliveira, V.J. Mediação microbiana na recuperação de sapais. PhD Thesis.
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Joana Barcelos e Ramos, Susana C. Ribeiro, Kai G. Schulz, Francisco J.R.C. Coelho, Vanessa Oliveira, Ângela Cunha, Newton Gomes, C. Brownlee, Eduardo B. Azevedo (2022) Emiliania huxleyi bacteria interactions in a changing ocean. 5th International Symposium on the Ocean in a High CO2 World, 13-16 September 2022, Peru.
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Joana Barcelos e Ramos, Susana C. Ribeiro, Kai G. Schulz, Francisco J.R.C. Coelho, Vanessa Oliveira, Ângela Cunha, Newton Gomes, C. Brownlee, Eduardo B. Azevedo (2022) Emiliania huxleyi - bacteria interactions in a changing ocean. Marine microbes in a changing climate, Royal Society, 12-13 September 2022, Whittlebury, Towcester, United Kingdom.
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Almeida, J., Marques, M., Oliveira, V., Egas, C., Mil-Homens, D., Fialho, A., Teixeira, M.C., Gomes, N.C.M., Costa, R., Keller-Costa, T. (2021) Marine host-associated bacteria show versatile secondary metabolite biosynthesis capacities and antimicrobial activities. MicroBiotec 21, 23-26 November 2021, Lisbon.
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Marques, M., Almeida, J., Mil-Homens, D., Fialho, A., Oliveira, V., Gomes, N.C.M., Costa, R., Keller-Costa, T. (2021) Bioprospecting bacterial symbionts of marine animals: sponge and coralassociated Gammaproteobacteria inhibit growth of notorious human and aquaculture pathogens. MicroBiotec 21, 23-26 November 2021, Lisbon.
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Oliveira V., Polónia A.R.M, Cleary D.F.R., Yusheng M.A., de Voogd N.J., Rocha U.N., Gomes N.C.M. (2019) Amplification of Plasmid DNA from sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification. 15th Symposium on Bacterial Genetics and Ecology, 26–30 May 2019, Lisbon, Portugal.
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Louvado A., Coelho F.J.R.C., Palma M., Osório R., Magnoni L., Viegas I., Gomes N. (2019) Effect of glycerol feed-supplementation on seabass (Dicentrarchus labrax) gut microbiota. . 15th Symposium on Bacterial Genetics and Ecology (BAGECO15), 26–30 May., Lisbon, Portugal.
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Louvado A., Pereira L., Coelho F., Pousão-Ferreira P., Ozório R., Gomes N. (2019) Humic acid modulates bacterioplankton and fish microbiome in a recirculating aquaculture system (RAS). . 15th Symposium on Bacterial Genetics and Ecology (BAGECO15), 26–30 May, Lisbon, Portugal.
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Polónia, A. R. M., Vanessa Oliveira, Rodolfo B. Toscan, João P. Saraiva, Ulisses N. da Rocha, Nicole J. de Voogd, Yusheng M. Huang, Daniel F.R. Cleary, Newton C.M. Gomes (2019) Metagenomic analysis of the sponge Cinachyrella sp., seawater and sediment of a Taiwanese coral reef ecosystem. Microbiotec’19, 5 to 7 December, 2019, Coimbra.
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Vanessa Oliveira, Polónia, A. R. M., Daniel R.F. Cleary, Yusheng M. Huang, Nicole J. de Voogd, Ulisses N. da Rocha, Newton C.M. Gomes (2019) Plasmid diversity of bacterial communities associated with the marine sponge Cinachyrella sp. Microbiotec’19 , 5 to 7 December, 2019, Coimbra.
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Oliveira V., Bonifácio D., Cleary D.F.R., Yusheng M.A., de Voogd N.J., Gomes N.C.M. (2018) Characterization of bacterial populations hosting plasmids in marine sponges from Taiwan. ISME 17 - 17th International Symposium on Microbial Ecology, 12-17 August, Leipzig, Germany.
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Oliveira V., Pires A.C.C., Cleary D.F.R., Pólonia A.R.M., Lim S.C., de Voogd N.J., Gomes N.C.M. (2017) Bacterial communities of Xestospongia testudinaria, sediment and water in a singaporean coral reef ecosystem. BAGECO 2017- 14th Symposium on Bacterial Genetics and Ecology., June 4-8, Aberdeen, Scotland.
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Domingues, P.M., Almeida, A., Serafim, L.S., Gomes, N.C.M., Cunha, A. (2016) Response of bacterial communities from deep-sea active and inactive mud volcanoes to the presence of crude oil in nitrate-reduction conditions. . EMBO Young Scientists' Forum, 1-2 September, Lisbon.
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Almeida, R., Oliveira, J.M.M., Pimentel, T., Monteiro, M., Andrade, T.S., Henriques, J.F., Soares, A.M.V.M. Loureiro, S., Gomes, N.C.M., Domingues, I. (2015) Effects of combined stress in the microbiome and biochemical markers of zebrafish embryos. IV Encontro Nacional de Pós-graduação em Ciências Biológicas (IV ENPGCB), Aveiro, Portugal, 30 March-2 April. IV Encontro Nacional de Pós-graduação em Ciências Biológicas (IV ENPGCB), 30 March-2 April, Aveiro, Portugal.
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Coelho FJRC, Cleary DFR, Ferreira M, Gomes NCM (2015) Response of sediment archaeal communities to ocean acidification and oil pollution. Bioremediation of oil-contaminated environments, 11 May 2015, Braga, Portugal.
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Silva, Y., Pereira, C., Costa, L., Santos, L., Cunha, A., Gomes, N.C.M., Calado, R., Almeida, A. (2015) Phage therapy as an approach to prevent Aeromonas salmonicida infections in juvenile sole fish. ICAR 2015 International Conference in Antibiotic Resistance, 26-28 January, Caparica, Portugal.
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Louvado, A., Almeida, A., Simões, M.M. Q., Gomes, N.C.M., Cunha, A. (2015) Biodegradation of PAHs and biosurfactant production in deep sea bacteria. Research Day - University of Aveiro, 20 May, Aveiro, Portugal.
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Sena, C., Azevedo, M.R., Ribeiro, S., Gomes, N., Coelho, F., Marques, A., Cunha, A., Almeida, A., Pinheiro, L.M. & Expedition 351 Scientists. (2015) Water-rock interactions and geomicrobiology in a sedimentary basin that records large volcanic eruptions – IODP Expedition 351. Research Day - University of Aveiro, 20 May, Aveiro, Portugal.
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Silva, Y. J., Pereira, C., Costa, L., Santos, L., Cunha, A., Gomes, N.C.M., Calado, R., Almeida, A. (2015) Phage therapy as an approach to prevent Aeromonas salmonicida infections in juvenile sole fish. ICAR 2015 International Conference in Antibiotic Resistance., 26-28 January, Caparica, Portugal.
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Almeida, R., Pimentel, T., Monteiro, M., Oliveira, J., Andrade, T., Henriques, J., Soares, A.M.V.M., Loureiro, S., Gomes, N., Domingues, I. (2014) Effects of combined stress to zebrafish embryos microbiome and biochemical markers. XIII Congresso Brasileiro de Ecotoxicologia – 2014 ecotox, Guarapari-ES, Brazil, 23-26 September. XIII Congresso Brasileiro de Ecotoxicologia-ECOTOX2014, 23-26 September, Guarapari-ES, Brasil.
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de Figueiredo D.R., Cleary D., Saraiva P., Gomes N., Gonçalves A.M.M., Reboleira A.S., Gonçalves F., Oliveira J., Condesso de Melo M.T., Abrantes N. (2014) Metagenomic overview of bacterioplankton diversity from Estremenho karst massif aquifer (Portugal). EcoHCC’14 - 3rd International Conference on Ecohydrology, Soil and Climate Change, EcoHCC'14, 10th-12th September 2014, Tomar, Portugal.
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Rita Almeida, Tânia Pimentel, Susana Loureiro, Newton Gomes, Amadeu M.V.M. Soares and Inês Domingues (2014) Combined effects of Ultraviolet radiation and xenobiotics on zebrafish embryos - changes in bacterial communities. SETAC Europe 24th Annual Meeting, 11-15 May 2014, Basel, Switzerland.
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Alves E., Melo T., Santos N., Simões C., Maciel E., Dória M.L., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Helguero L., Domingues P., Domingues M.R.M., Almeida A. (2014) Photodynamic oxidation of bacterial membrane phospholipids: a new insight provided by lipidomics. 3rd Workshop in Lipidomics, 21 May, University of Aveiro.
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Pinheiro, J.N., Marques, C.R., Pinto, G., Amira, M., Mendo, S., Gomes, N.C., Gonçalves, F., Rocha-Santos, T., Duarte, A.C., Roembke, J., Sousa, J.P., Ksibi, M., Haddioui, A., Pereira, R. (2013) Selection of arboreous species for the phytoremediation of metal contaminated soils: Fraxinus angustifolia. XVI ICZS – International Colloquium on Soil Zoology, 6-10 Agosto, Coimbra, Portugal.
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Calado R., Leal M.C., Eiras F.R., Neto G., Queiroga H., Cleary D.F.R., Rotllant G., Guerao G., Gomes N.C.M., Silva J.M., Giménez L., Anger K., Pechenik J.A., Nejstgaard J.C., Frischer M.E. (2013) Project NO RESET - Shedding light over the trophic regimes of brachyuran crab larvae supplied to coastal habitats before and during upwelling events. 2nd International Symposium on the Molecular Detection of Trophic Interactions, 13-17 May, Lexington, KY, USA.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Almeida A., Cunha Â., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Ocean acidification and oil contamination have a synergistic effect on microbial community composition. FEMS, 2013, Leipzig, Alemanha.
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Santos L., Batista I., Santos A.L., Coelho F.J.R.C., Gomes, N., Dias, J.M., Cunha, Â., Almeida, A. (2013) Heterotrophic activity in the surface microlayer of an estuarine system (Ria de Aveiro). FEMS, 2013, Leipzig, Germany.
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Pereira C, Baptista I, Silva AP, Cunha A, Gomes NCM, Romalde JL, Nunes ML, Almeida A (2013) Seasonal variation of bacterial community composition of bivalve molluscs harvesting waters. FEMS, 21-25 July, Leipzig, Germany.
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Oliveira V., Gomes N.C.M., Almeida A., Silva A.M.S, Simões M.M.Q., Smalla K., Cunha A. (2013) Characterization of endophytic community structure and functional diversity associated with two salt marshes plants (Halimione portulacoides and Sarcocornia perennis). FEMS 2013 - 5th Congress of European Microbiologists, July 21-25, Leipzig, Germany.
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Silva A.P., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2013) Effect of culture medium in the production of bacterial rhamnolipids. FEMS 2013 - 5th Congress of European Microbiologists, July 21-25, Leipzig, Germany.
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Alves E., Faustino M.A.F., Tomé J.P.C., Neves M.G. P. M. S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2013) Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins. 15th Congress of the European Society for Photobiology, 2-6 September, Liege, Belgium.
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Alves E., Melo T., Simões C., Faustino M.A.F., Tomé J.P.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Domingues P., Domingues M.R.M., Almeida A., Neves M.G.P.M.S. (2013) Photodynamic oxidation of Staphylococcus warneri membrane phospholipids: new insights based on lipidomics. 15th Congress of the European Society for Photobiology, 2-6 September, Liege, Belgium.
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Silva YJ, Pereira C, Costa L, Cunha A, Gomes NCM, Almeida A (2013) Influence of organic matter content in the inactivation of the fish pathogenic Aeromonas salmonicida by a new isolated bacteriophage. First EMBO Conference on Aquatic Microbial Ecology: SAME13 , 8-13 September, Stresa, Italy.
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Silva YJ, Costa L, Pereira C, Calado R, Gomes NCM, Cunha A, Almeida A (2013) Application of a rapid method for bacteria detection, in order to evaluate the effect of different environmental variables in the efficiency of phage therapy in fish farms. First EMBO Conference on Aquatic Microbial Ecology: SAME13 , 8-13 September, Stresa, Italy.
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Baptista I., Salvador A., Petronilho S., Stein P., Ferreira J., Costa V., Gomes N., Cunha A., Almeida A., Rocha S.R. (2013) Food Flow Extract - Flow Extraction of Microbiological Contaminants. FEMS 2013 - 5th Congress of European Microbiologists, July 21-25, Leipzig, Germany.
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Santos L, Vaz L, Gomes NMC, Vaz N, Dias JM, Cunha A, Almeida A (2013) Impact of freshwater inflow on bacterial abundance and activity in the estuarine sytem Ria de Aveiro. 1st EMBO Conference on Aquatic Microbial Ecology – SAME13, 8-13 September , Stresa, .
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Santos L., Gomes N.G.M., Santos E.B.H. , Dias J.M., Cunha A., Almeida A. (2013) Photochemical and microbial alterations of DOM spectroscopic properties in the estuarine system Ria de Aveiro. , 2-6 September, Liege, Belgium .
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Pinto A.G.M., Cunha A., Gomes NMC, Santos E.B.H., Almeida A. (2013) Effect of solar irradiation on heterotrophic bacteria in the marine environment. 1st EMBO Conference on Aquatic Microbial Ecology – SAME13, 8-13 September, Stresa, Italy.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A., Lillebo A.I., Calado R., Cleary D.R.F., Gomes N.C.M. (2013) Synergistic impact of global climate change and oil pollution on estuarine sediment communities simulated in laboratory microcosms. 27º Congresso Brasileiro de Microbiologia, 29 de September - 3 October 2013, Natal, Brasil.
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Santos L., Vaz L., Gomes N.C.M., Vaz N., Dias J.M., Cunha A., Almeida A. (2013) Impact Freshwater Inflow on Bacterial Abundance and Activity in the Estuarine System Ria de Aveiro. First EMBO Conference on Aquatic Microbial Ecology: SAME13, 8-13 September, Stresa, Italy.
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Coelho F.J.R.C., Rocha R.J.M., Pires A.C.C., Castanheira J.M., Rocha S.M., Costa R., Almeida A., Cunha A,, Lillebø A.I., Calado R., Cleary D.F.R., Gomes N.C.M. (2013) Synergistic effects of global climate change and oil pollution on estuarine sediment bacterial communities. Abstract Book: 2005. FEMS, 2013, Leipzig, Alemanha.
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Pereira C., Silva Y.J., Santos A.L., Cunha A., Gomes N.C.M., Almeida A. (2012) Phage Therapy. Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival and effect on bacterial community structure. Research Day, 13 Junho, Aveiro, Portugal.
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Gonçalves S., Pereira C.G., Manco S., Gonzalez-Rey F., Calado R., Cravo A., Gomes N.C.M., Duarte D., Soares A.M.V.M., Loureiro S., Bebianno M.J. (2012) Water Quality in Harbors - the PORTONOVO project in Portugal. 6th SETAC World Congress / SETAC Europe 22nd Annual Meeting, 20-24 May 2012, Berlin, Germany.
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Coelho F.J.R.C., Rocha R. J.M., Pires A.C.C., Castanheira J., Costa R., Lillebø A.I., Almeida A., Cunha Â., Calado R., Cleary D., Gomes N.C.M. (2012) Marine experimental life support system for microbial communities. International Society for Microbial Ecology, 2012, Copenhagen, Denmark.
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Silva Y.J., Carla Pereira, Ângela Cunha, Newton C.M. Gomes, Adelaide Almeida (2012) Evaluating seasonal dynamics of bacterial communities in a marine fish aquaculture: a preliminary study before applying phage therapy. AQUA, 1-5 September, Prague, Czech Republic.
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Silva Y.J., Calado R., Gomes N.C.M., Cunha A., Almeida M.A. (2012) Application of a rapid method for bacteria detection, in order to evaluate the effect of different cultural conditions on the efficacy of phage therapy as an alternative to inactivate pathogenic bacteria in fish farms. EuroPhages, 24-26 September, Oxford, UK.
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Silva Y.J., Manco S., Costa R., Rodrigues V., Ferreira H., Pousão-Ferreira P., Almeida M.A., Cunha A., Calado R., Gomes N.C.M., Dias J. (2012) Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata. AQUA, 1-5 de September, Prague, Czech Republic.
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Rocha R.J.M., Cartaxana P., Gomes N.C.M., Calado R. , Serôdio J. (2012) Sarcophyton glaucum and Sinularia flexibilis photosynthesis under different light regimes. 12th International Coral Reef Symposium , July 9-13, Cairns, Australia.
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Rocha R.J.M., Serôdio J., Gomes N.C.M., Cartaxana P., Calado R. (2012) The effect of light photosynthetically active radiation in the photosynthetic performance of cultured soft coral Sinularia flexibilis and Sarcophyton glaucum. AQUA 2012, September 1- 5, Prague, Czech Republic .
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Bouguerra, S., Hentati, O., Marques, C.R., Sousa, J.P., Nogueira, I.V., Gomes, N.C., Mendo, S., Gonçalves F., Ksibi, M., Roembke, J., Haddioui, A., Pereira R. (2012) The impact of Contamination with phosphogypsum on the structural and functional diversity of the soil microbial community Sfax, Tunisia. XVI ICZS – International Colloquium on Soil Zoology, 6-10 Agosto, Coimbra, Portugal.
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Almeida A, Pereira C, Silva YJ, Cunha A, Gomes NCM (2012) Preliminary studies of the applicability of phage therapy with new isolated bacteriophages in marine fish aquaculture. EuroPhages, 24-26 September, Oxford, UK.
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Silva Y.J., Calado R., Gomes N.C.M., Cunha A., Almeida M.A. (2012) Genotoxic Activity of Sulforaphane in an Osteosarcoma In vitro model. European Society of Toxicology in vitro - International conference, October 16-19, Lisbon, Portugal.
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Bouguerra S. , Hentati O., Marques C.R., Sousa J.P., Nogueira V.I., Gomes N.C, Mendo S., Gonçalves F., Ksibi M., Römbke J., Haddioui A., Pereira R. (2012) ) The impact of contamination by phophogypsum on the structural and functional diversity of the soil microbial community in a deposition area (Sfax, Tunisia). 6th SETAC World Congress / SETAC Europe 22nd Annual Meeting, 20-24 May, Berlin, Germany.
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Bouguerra S. , Hentati O., Marques C.R., Sousa J.P., Nogueira V.I., Gomes N.C, Mendo S., Gonçalves F., Ksibi M., Römbke J., Haddioui A., Pereira R. (2012) The impact of contamination by phophogypsum on the structural and functional diversity of the soil microbial community in a deposition area (Sfax, Tunisia). (Poster presentation). th SETAC World Congress / SETAC Europe 22nd Annual Meeting., 20-24 May, Berlin, Germany.
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Cunha M.R. , Hilário A. , Vieira R.P. , Magalhães V. , Adão H. , Aranda da Silva A. , Génio L. , Gomes N. , Pinheiro L. , Ravara A. , Rodrigues C. , Terrinha P. , Scholz F. , Hensen C. (2012) A possible link between hydrothermal vents and cold seeps – new mud volcanoes along deep-reaching transform faults in the SW Iberian Margin (NE Atlantic). HERMIONE Annual Meeting 2012, 11-14 September 2012, Carvoeiro, Portugal.
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Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria De Aveiro. Jornadas da Ria de Aveiro, 2-4 de Maio 2011, Aveiro, Portugal.
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Domingues P.M., Louvado A., Coelho F.J.R.C., Santos A.L., Gomes N.C.M., Almeida A., Cunha A. (2011) Isolamento e Caracterização de Bactérias Hidrocarbonoclásticas Produtoras de Biossurfactantes da Ria de Aveiro. Jornadas da Ria de Aveiro, 2-4 Maio, Aveiro, Portugal.
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Almeida A., Cunha A. , Gomes N.C.M., Santos L., Mendes C., Pereira C. (2011) Impacto do Virioplâncton sobre a Comunidade Bacteriana da Ria de Aveiro. Jornadas da Ria de Aveiro., 2-4 Maio, Aveiro, .
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Marques C.R., Mistiri A., Rodrigues C., Santos C., Pinheiro J., Bouguerra S., Lopes I., Santos B., Pinto G., Haddioui A., Ksibi M., GGonçalves F., Gomes N.C.M, Mendo S., Römbke J., Sousa J.P., Pereira R. (2011) Towards the phytoremediation of mining explorations – a NATO SfP project. 21st SETAC Europe Annual Meeting, 15-19 May, Millan, Italy.
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Alves E., Arrojado C., Pereira C., Carvalho C., Faustino M., Tomé J., Neves M., Tomé A., Cavaleiro J., Cunha A., Gomes N., Almeida A. (2011) Terapia fotodinâmica antimicrobiana como alternativa aos antibióticos para inactivar bactérias patogénicas em pisciculturas. Jornadas da Ria de Aveiro, 2-4 Maio, Aveiro, Portugal.
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Santos L., Gomes N C M., Cunha A., Almeida A. (2011) Variação da abundância e produtividade bacteriana na Ria de Aveiro durante um período de 10 anos (1996-2007). Jornadas da Ria de Aveiro 2011, 2-4 Maio, Aveiro, Portugal.
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Pereira C., Silva Y. J., Cunha A., Gomes N.C.M., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em Pisciculturas. II Workshop de Biotecnologia da Universidade de Aveiro, 18 Maio, Aveiro, Portugal.
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Santos L. M. P., Santos A. L., Coelho F., Gomes N., Cunha A., Almeida A. (2011) Different strategies of organic matter decomposition and utilization by bacterioneuston and bacterioplankton in an estuarine system. 5th EuroLag, 25 to 30 July, Aveiro, Portugal.
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Oliveira V., Santos A.L., Aguiar C., Gomes N.C.M., Almeida A., Rocha S., Cunha A. (2011) Bacteria in salt-marsh sediments of Ria de Aveiro: influence of halophyte root exudates on abundance and diversity. EuroLag 5th, 25-30 July , Aveiro, Portugal.
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Martins, P., Lopes, M.L., Rodrigues, A.M., Gomes, N., Quintino, V. (2011) Microbial communities associated with the decomposition process of Phragmites australis in transitional systems. 5th EUROLAG - European Coastal Lagoons Symposium, 25th to 30 July 2011, University of Aveiro, Aveiro, Portugal.
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Pereira C., Silva Y.J., Cunha A., Gomes N.C.M., Almeida A. (2011) Bacteriophages with potential for inactivation of fish pathogenic bacteria : survival and effect on bacterial community structure . Oxford bacteriophage conference and exhibition, 19-21 September, Oxford, UK.
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Rocha J., Peixe L., Gomes N.C.M., Calado R. (2011) Cnidarians as a source of new marine drugs - most promising compounds in the 21st century and future steps for bioprospecting. World Conference on Marine Biodiversity, 26-30.Set.2011, Aberdeen, UK.
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Santos L., Santos A.L., Coelho F., Gomes N.C.M., Cunha A., Dias J.M., Almeida A. (2011) Avaliação da hidrodinâmica estuarina na actividade bacteriana na microcamada superficial. Jornadas da Ria de Aveiro 2011, 2-4/05/2011, Aveiro, Portugal.
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Santos, A.L., Oliveira, V., Baptista, I., Moreirinha, C., Henriques, I., Gomes, N.C.M., Almeida, A., Delgadillo, I., Correia, A., Cunha, A. (2011) Wavelength dependence of the molecular targets involved in UV-induced damage to aquatic bacteria. 12th Symposium on Aquatic Microbial Ecology, August 28 - September 2, 2011, Rostock, Germany.
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Costa L , Carvalho CMB, Faustino MAF, Tomé JPC, Neves GPMS, Tomé AC, Cavaleiro JAS, Cunha A, Gomes NCM, Almeida A (2011) Behaviour of a non-enveloped virus after ten repeated cycles of aPDT. 14th congress of the European Society for Photobiology, 1st-6th September, Genebra, Suíça.
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Alves A.E.M., Almeida A., Gomes N.C.M., Faustino M.A.F., Neves M.G.P.M.S., Cunha A. (2011) Aplicação de uma porfirina catiónica na inactivação fotodinâmica de um biofilme bacteriano. II Workshop de Biotecnologia da Universidade de Aveiro, 8 Maio, Aveiro, Portugal.
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Alves E., Tomé J., Neves G. , Tomé A., Cavaleiro J.A.S., Faustino A., Cunha A., Gomes N., Almeida A. (2011) Antimicrobial photodynamic therapy: Low environmental impact approach to inactivate pathogenic bacteria in aquaculture systems. Research Day @ ua, 8 June, Aveiro, Portugal.
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Cunha A., Coelho F.J., Sousa S., Santos L., Santos A.L., Almeida A., Gomes N.C.M. (2011) Oil degrading bacteria from the marine surface microlayer. MicroBiotec`11 – Portuguese Society for Microbiology and Portuguese Society for Biotechnology, 1-3 December, Braga, Portugal.
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Cunha A., Louvado A., Domingues P., Coelho F.J.R.C., Santos A.L., Almeida A., Gomes N.C.M. (2011) Surfactant-Resistant and Biosurfactant-Producing Pseudomonads from the Estuarine Surface Microlayer. MicroBiotec`11 – Portuguese Society for Microbiology and Portuguese Society for Biotechnology, 1-3 December, Braga, Portugal.
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Reis A., Fidalgo L., Almeida A., Gomes N.C.M., Cunha A. , Saraiva J. (2011) Desenvolvimento de resistência à inactivação por alta pressão em Salmonella typhimurium. Workshop de Biotecnologia da Universidade de Aveiro, 18 May, , .
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Silva Y., Calado R., Gomes N.C.M., Cunha A., Almeida A. (2011) Application of a rapid method for bacteria detection, in order to evaluate the efficiency of phage therapy as an alternative to inactivate pathogenic bacteria in fish farms. Phages, 2011. 1st Oxford Bacteriophages Conference, 19-21 September, Oxford, UK.
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Silva Y.J., Calado R.J., Gomes N.C.M., Cunha A., Almeida A. (2011) Aplicação de um método rápido de detecção bacteriana para avaliar a eficácia da terapia fágica como alternativa para inactivar bactérias patogénicas em pisciculturas. Jornadas da Ria, 2 - 4 Maio, Aveiro, Portugal.
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Gomes C.F.A.C., Woranovicz-Barreira S.M., Faustino M.A.F., Fernandes R., Neves M.G.P.M.S., Tomé A.C., Gomes N.C.M., Almeida A., Cavaleiro J.A.S., Cunha A., Tomé J.P.C. (2011) Photodynamic Inactivation of Penicillium chrysogenum Conidia by Cationic Porphyrins. 14th Congress of the European Society for Photobiology, ESP 2011 , 1-6 September, Geneva, Switzerland.
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Marques CR, Marques C.R., Mestiri A., Mistiri A, Rodrigues C., Rodrigues C, Santos C., Pinheiro J, Pinheiro J., Bouguerra S, Bouguerra S., Lopes I, Lopes I., Santos B, Santos B., Pinto G, Pinto G., Haddioui A, Ksibi M, Haddioui A., Gonçalves F, Ksibi M., Gomes NCM, Gonçalves F., Gomes NCM, Mendo S, Römbke J, Mendo S., Römbke J., Sousa JP, Pereira R, Sousa J.P., Pereira R. (2011) Towards the phytoremediation of mining explorations – a NATO SfP project. 21st SETAC Europe Annual Meeting, May, Millan, Italy.
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Pinto A.G.M., Gomes N.C.M., Santos L., Cunha A., Santos E.B.H., Almeida A. (2011) Composição da matéria orgânica dissolvida na água da Ria de Aveiro: efeito da irradiação solar. Jornadas da Ria, 2 - 4 Maio, Aveiro, Portugal.
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Pereira C., Silva Y. J., Cunha A., Gomes N.C.M., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em Pisciculturas. Jornadas da Ria de Aveiro, 2-4 Maio, Aveiro, Portugal.
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Leal M.C., Puga J., Gomes N.C.M., Serôdio J., Calado R. (2011) New Marine Drugs from Marine Invertebrates in the 21st century - Where and What are we Bioprospecting?. World Aquaculture Society, , Natal, Brazil.
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Rocha R.J.M., Serôdio J., Gomes N.C.M., Cartaxana P., Calado R. (2011) The effects of light in the photobiology of cultured monoclonal fragments of the ahermatypic coral Sinularia flexibilis. World Aquaculture, June 6 - 10, Natal, Brazil.
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Santos L., Santos A. L., Coelho F., Gomes N. C. M., Cunha A., Dias J. M. , Almeida A. (2011) Avaliação da hidrodinâmica estuarina na actividade bacteriana na microcamada superficial. Jornadas da Ria de Aveiro 2011, 2-4 Maio, Aveiro, Portugal.
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Pereira R., Ksibi M., Haddioui A., Römbke J. , Sousa J.P. , Gonçalves F., Marques C., Frankenbach S., Silva C., Mistiri A. , Hentati O. , Gomes N., Mendo S. (2010) Research on bioremediation of mining areas as part of a NATO Science for Peace Project. SETAC Europe 20th Annual Meeting 2010, , Seville, Spain.
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Alves E., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2010) Antimicrobial photodynamic therapy in aquaculture: effect of physical and chemical properties of water on the photoinactivation of Vibrio fischeri. 2010 European Society for Photobiology School, 21-26 June, Brixen/Bressanone, Italy.
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Faustino M.A.F., Tavares A., Carvalho C.M.B., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Alves E., Almeida A. (2010) Potential development of bacterial resistance and bacterial viability recovery after photodynamic therapy. Sixth International Conference on Porphyrins and Phthalocyanines ICPP-6, 4-9 July, New Mexico, USA.
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Pires, A.C.C., Cleary, D.F.R., Calado, R., Almeida, A., Cunha, Â., Cavalcanti, S.D.G.A., Smalla, K., Gomes, N.C.M. (2010) Rhizosphere Effect on Archaeal Communities Present in Mangrove Sediment. International Meeting on Marine Resources, 16-17 November 2010, Peniche, Portugal.
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Cunha A., Almeida M.A., Coelho F., Framegas D., Gomes N.C.M., Louvado A. (2010) Surfactant-resistant bacteria from the marine surface microlayer. Biosphere-Atmosphere Interaction in a Changing Environment: from Local to Global Scale, 20 Setembro, Aveiro, Portugal.
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Costa L, Carvalho CMB, Faustino MAF, Tomé JPC, Neves GPMS, Tomé AC, Cavaleiro JAS, Cunha A, Gomes NCM, Almeida A (2010) Study of viral resistance following repeated exposure to aPDT and recovery of viability. European Society for Photobiology School, 21st-26th June, Brixen, Italy.
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Alves E., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2010) Antimicrobial photodynamic therapy in aquaculture: effect of temperature, pH, salinity, oxygen and organic matter on the photoinactivation of Vibrio fischeri. European Photobiology School, 21-26 June, Brixen/Bressanone, Italy.
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Rocha R.J.M., Serôdio J., Gomes N.C.M., Furtado J., Cartaxana P., Calado R. (2010) The effect of light in the photosynthetic pigments and zooxanthellae density of cultivated ahermatypic coral Sarcophyton sp. , October 5-8, Porto , Portugal.
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Coelho F., Sousa S., Santos A.L., Oliveira V., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading bacterial community from the Sea Surface Microlayer in an estuarine system. III Internacional Conference on Environmental, Industrial and Applied Microbiology, 2-4 December, Lisbon, Portugal.
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Coelho F., Moreira A., Simões C., Gomes F., Sousa S., Ramos A., Louvado A., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) Microbiologia Ambiental: potencial biotecnológico da Ria de Aveiro. Congresso Internacional de História e Património - Aveiro 250 anos, 4-5 july, Aveiro, Portugal.
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Coelho F., Sousa S., Santos A. L., Gomes N.C.M., Almeida A., Cunha A. (2009) PAH degrading bacterial community in an estuarine system. Biological Responses to Chemical Contaminants: from molecular to community level. Interdisciplinary Symposium for Young Investigators, 2-4 September, Aveiro, Portugal.
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Prata C. , Ribeiro A. , Cunha A. , Gomes N. C. M. , Almeida A. (2009) Marine surface microlayer as a source of viruses. SAME XI, September 2009, Pyran, Slovenia.
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Tavares A., Dias S.R.S., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Almeida A. (2009) Photoinactivation mechanism of Gram negative recombinant bioluminescent bacteria by cationic porphyrins. 13th Congress of the European Society for Photobiology in conjunction with the 2nd Conference of the European Platform for Photodynamic Medicine (EPPM), 5-10 September, Wroclaw, Poland.
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Tavares A., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Alves E., Costa L., Almeida A. (2009) Study of the photodynamic inactivation mechanism of a recombinant bioluminescent Escherichia coli. ICP - 15th International Congress on Photobiology, 18 - 23 June 2009, Dusseldorf, Germany.
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Tavares A., Tomé J., Faustino M.A., Neves M.G., Tomé A., Cavaleiro J., Carvalho C., Cunha A., Gomes N., Alves E., Almeida A. (2009) Study of the photoinactivation mechanisms of a recombinant bioluminescent Escherichia coli. VIII Simpósio de Pós-Graduação do Departamento de Biologia da Universidade de Aveiro, 28-29 April 2009, Aveiro, Portugal.
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Mendes C., Santos A.L., Gomes N.C.M., Cunha A., Almeida A (2009) ROLE OF LYSOGENY AT THE AIR-WATER INTERFACE. Eurobiofilms 2009 , 2-5 September 2009, Rome, Italia.
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Pereira C, Santos A L, Arrojado C, Santos M, Cunha A, Gomes NCM, Almeida A (2009) Phage effects on the structural bacterial diversity in aquaculture water. International Meeting on Marine Resources, Novembro 2009, Peniche, Portugal.
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Oliveira V., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Património Microbiológico do Sapal da Ria de Aveiro: importância das bactérias para a reciclagem de matéria orgânica. Congresso Internacional de História e Património de Aveiro. Centro Cultural e de Congressos de Aveiro, 4 a 5 de Junho, Aveiro, Portugal.
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Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B, Tomé J.P.C, Faustino M.A.F, Neves M.G.P.M.S, Tomé A.C, Cavaleiro J.A.S, Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. Interdisciplinary Symposium Biological Responses to Chemical Contaminants: from molecular to community level, Setembro 2009, Aveiro, Portugal.
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Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S, Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M, Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. VIII Simpósio de Pós-Graduação do DeBio, Universidade de Aveiro, Abril, Aveiro, Portugal.
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Arrojado C., Santos A. L., Pereira C., Carvalho C.M.B., Tomé J.P.C., Faustino M.A.F., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha A., Gomes N.C.M., Almeida A. (2009) Inactivation of pathogenic bacteria of aquaculture systems by porphyrin derivatives. VIII Simpósio de Pós-Graduação do DeBio Universidade de Aveiro, Abril, Aveiro, Portugal.
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Oliveira V., Santos A.L., Coelho F., Aguiar C., Sousa S., Lopes S., Gomes N.C.M, Almeida A., Cunha A. (2009) Bacterial in salt-marsh sediments: Influence of plant colonization on abundance, Physiological diversity and heterotrophic activity (Ria de Aveiro, Portugal). III Internacional Conference on Environmental, Industrial and Applied Microbiology, 2 a 4 de December , Lisbon, Portugal.
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Oliveira V., Santos A.L., Coelho F., Aguiar C., Gomes N.C.M., Almeida A., Cunha A. (2009) Structural diversity, physiological profiles and abundance of sulfate-reducing bacteria in bacterial communities of salt-marsh sediments (Ria de Aveiro, Portugal). 11th Symposium on Aquatic Microbiology - SAME11, 3 August to 4 September, Piran, Slovenia.
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Santos A.L., Baptista I., Oliveira V., Lopes S., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Role of Photochemically-Induced Oxidative Stress in Determining the Biological Effects of UV Radiation in Bacteria. III Internacional Conference on Environmental, Industrial and Applied Microbiology, 2 - 4 December, Lisbon, Portugal.
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Pereira C., Santos A. L., Arrojado C., Cunha A., Gomes N.C.M., Newton N.C.M., Almeida A. (2009) Bacterial diversity of aquaculture systems on the Ria de Aveiro estuarine. VIII Simpósio de Pós-Graduação do Departamento de Biologia da Universidade de Aveiro, Abril 2009, Aveiro, Portugal.
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Santos A.L., Lopes S., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Resistance to DNA-Damage and UV-Induced Oxidative Stress in Estuarine Bacterioneuston. International Meeting on Marine Resources, 16-18 November 2009, Peniche, Portugal.
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Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer. Biological Responses to Chemical Contaminants: from molecular to community level, 2-4 September 2009, Aveiro, Portugal.
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Louvado A., Santos A.L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N.C.M., Cunha A. (2009) Biotechnological Potential of Surfactant Resistant Bacteria from the Surface Microlayer. International Meeting on Marine Resources 09, 16-18 November, Peniche, Portugal.
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Pereira C., Santos A. L., Arrojado C., Cunha A., Gomes N.C.M., Almeida A. (2009) Bacterial diversity of aquaculture systems on the Ria de Aveiro estuarine. VIII Simpósio de Pós-Graduação do DeBio Universidade de Aveiro, Abril, Aveiro, Portugal.
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Santos A.L., Lopes S., Alves E., Gomes N.C.M., Correia A., Almeida A., Cunha A. (2009) Involvement of reactive oxygen species in UVR-induced damage of estuarine bacterioneuston isolates. 13th Congress of the European Society for Photobiology in conjunction with the 2nd Conference of the European Platform for Photodynamic Medicine (EPPM), September 5-10, Wroclaw, Poland.
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Santos, A.L., Santos, A.L., Baptista, I., Baptista, I., Lopes, S., Lopes, S., Gomes, N.C.M., Henriques, I., Gomes, N.C.M., Henriques, I., Correia, A., Almeida, A., Almeida, A., Correia, A., Cunha, A., Cunha, A. (2009) Biological and physiological responses of bacterioneuston and bacterioplankton to experimental UV-B exposure. SAME 11 - 11th Symposium on Aquatic Microbial Ecology, 30th August – 4 September, Piran, Slovenia.
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Santos A.L., Lopes S., João C., Henriques I., Gomes N.C.M., Correia A., Almeida A., Cunha A. (2009) UV Radiation induced inactivation and recovery potential in bacterioneuston isolates. 15th International Congress on Photobiology, 18-23 June 2009, Dusseldorf, Germany.
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Santos A.L., Coelho F., Santos L., Mendes C., Louvado A., Sousa S., Lopes S., Moreira A., Gomes F., Henriques I., Almeida A., Correia A., Gomes N.C.M., Cunha A. (2009) Characterization and Biotechnological Potential of Bacterioneuston. Eurobiofilms, 2-5 September 2009, Rome, Italy.
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Santos A.L., Henriques I., Gomes N.C.M., Almeida A., Correia A., Cunha A. (2009) Impact of UV-B radiation on estuarine and freshwater microbial communities. International Symposium in Marine Sciences, 18-23 April 2009, Vigo, Spain.
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Pires, A.C.C., Santos, A.L., Becking, L.E., Voogd, N.J., Almeida, A., Cunha, A., Calado, R., Cleary, D.F.R., Gomes, N.C.M (2009) Freeze-thaw pre-lysis may not improve microbial DNA extraction from sponges. BioMicroWorld’09 – III International Conference on Environmental, Industrial and Applied Microbiology, 2-4 December, Lisbon , Portugal.
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Nogueira, V.I.J.O., Pereira, R., Lopes, I., Gonçalves, F., Soares, A.M.V.M., Almeida, A., Gomes, N.C. (2009) The impact of organic and inorganic nanomaterials in the soil microbial community structure. 14th International Symposium on Toxicity Assessment, 31 of August - 4 of September, Metz, France.
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Gomes, N.C.M., Cleary, D.F.R., Pinto, F.N. , Egas, C., Almeida, A., Cunha, A., Mendonça-Hagler, L.C.S., Smalla, K. (2009) Rhizosphere Microbial Communities in Polluted Urban Mangroves: insights gained by massively parallel pyrosequencing. Interdisciplinary Symposium: BIOLOGICAL RESPONSES TO CHEMICAL CONTAMINANTS: from molecular to community level., 2-4 of September, Aveiro, Portugal.
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Costa L. , Lopes J., Cunha A., Gomes N., Carvalho C.M.B., Faustino M.A.F., Neves M.G.P.S, Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S, Almeida A. (2009) Importance of type I and type II pathways on sewage bacteriophage photoinactivation. 15th International Congress on Photobiology, 18 a 23 de Junho, Dusseldorf, Alemanha.
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Costa L. , Cunha A., Gomes N.C.M., Carvalho C.M.B., Faustino M.A.F., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S, Almeida A. (2009) Involvement of type I and type II mechanisms on MS2 sewage bacteriophage photoinactivation. 13th congress of the European Society for Photobiology, 5 a 10 de Setembro, Wroclaw, Polónia.
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Costa L. , Cunha A., Gomes N.C.M., Carvalho C.M.B., Faustino M.A.F., Neves M.G.P.M.S., Tomé J.P.C., Tomé A.C., Cavaleiro J.A.S, Almeida A. (2009) Effect of different sources and light intensities on T4-like sewage bacteriophage photoinactivation. 13th congress of the European Society for Photobiology, 5 a 10 de Setembro, Wroclaw, Polónia.
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Oliveira, J., Gomes, N.C.M., Cunha, A., Almeida, A., Castilho, F., Pereira, M.J. (2009) Bacterial DNA extraction from the Blue Mussel Mytilus edulis and their surrounding environment – methodology comparison. II International Symposium in Marine Sciences - II ISMS09, Facultad de Ciencias del Mar, Vigo, España, 27-30 April. ORAL COMMUNICATION BY INVITATION. International Meeting on Marine Resources - IMMR09. Oral communication by invitation, 16-18 Novembro, Peniche, Portugal.
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Oliveira, J., Cunha, A., Almeida, A., Gomes, N.C.M., Castilho, F., Romalde, J.L., Pereira, M.J. (2009) Bacterial DNA extraction from the Blue Mussel Mytilus edulis and their surrounding environment – Methodology comparison. International Meeting on Marine Resources – IMMR’09, Peniche, Portugal, 16-18 November. II International Symposium in Marine Sciences - II ISMS09, 27-30 Abril, Vigo, Espanha.
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Oliveira, J., Cunha, A., Almeida, A., Gomes, N.C.M., Castilho, F., Romalde, J.L., Pereira, M.J. (2009) Assessment of the microbial contamination in bivalves - Future perspectives. II International Symposium in Marine Sciences - II ISMS09, Facultad de Ciencias del Mar, Vigo, España, 27-30 April. II International Symposium in Marine Sciences - II ISMS09, 27-30 Abril, Vigo, Espanha.
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Oliveira, J., Cunha, A., Almeida, A., Gomes, N.C.M., Castilho, F., Romalde, J.L., Pereira, M.J. (2009) Assessment of the microbiological contamination of bivalves – future perspectives. International Meeting on Marine Resources – IMMR’09, Peniche, Portugal, 16-18 November. . International Meeting on Marine Resources - IMMR09, 16-18 Novembro, Peniche, Portugal.
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Gomes N.C.M. (2008) Mangrove rhizosphere effect on bacterial communities inhabiting intertidal marine sediments. Symposium of Biology Students in Europe (SymBioSE), 30 July - 9 August, Aveiro, Portugal.
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Gomes N.C.M. (2008) Hydrocarbon pollution in urban mangroves: recent insights gained by molecular analysis of microbial communities. SeaSink, 26-28 June, Porto, Portugal.
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Polónia ARM, Cleary DRF, Duarte LN, de Voogd NJ, Gomes NCM Composition of Archaea in seawater, sediment and sponges in the Kepulauan Seribu reef system, Indonesia. First EMBO Conference on Aquatic Microbial Ecology: SAME13, , Stresa, Italy.
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Oliveira, V., Gomes, N.C.M., Cleary, D.F.R., Almeida, A., Silva, A., Simões, M.M.Q., Silva, H., Cunha, A. In depth molecular analysis of bacterial communities in salt marshes chronically exposed to oil hydrocarbons. Research Day - University of Aveiro, 3 June, Aveiro, Portugal.
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ARM Polónia, DFR Cleary, LN Duarte, NJ de Voogd, NCM Gomes Composition and diversity of Archaea in seawater, sediment and sponges in the Kepulauan Seribu reef system, Java, Indonesia. Ninth World Sponge Conference 2013, , Fremantle, Western Australia.
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Nicole de Voogd, Daniel FR Cleary, Ana RM Polónia, Newton CM Gomes Community structure of Archaea and Bacteria in two Indonesian sponges. Ninth World Sponge Conference 2013, Fremantle, Western Australia, .
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Rossana M. Freitas, Daniel F.R. Cleary, Ana R.M. Polónia, Leontine E. Becking, Newton C.M. Gomes Diversity of bacterial community in mussels from Indonesian marine lakes. First EMBO Conference on Aquatic Microbial Ecology: SAME13, , Stresa, Italy.
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Nicole J de Voogd, Daniel FR Cleary, Ana RM Polónia, Anne Bialecki, Newton CM Gomes The Microbial Communities Inhabiting Sponges of the Remote Western Indian Ocean Island of Mayotte. 2nd International Symposium on Sponge Microbiology, October 26-29, 2014, Baltimore, Maryland, USA.
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Almeida, R., Pimentel, T., Monteiro, M., Oliveira, J., Andrade, T., Henriques, J., Soares, A.M.V.M., Loureiro, S., Gomes, N., Domingues, I. (2014) Effects of combined stress to zebrafish embryos microbiome and biochemical markers. In: Sociedade Brasileira de Ecotoxicologia ECOTOX-BRASIL, SETAC (Eds.), XIII Congresso Brasileiro de Ecotoxicologia – 2014 ecotox Anais de Resumos, ISBN 978-85-66199-01-7, Guarapari-ES, Brazil. 432-433 pp.
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Alves E., Tomé J., Neves G., Tomé A., Cavaleiro J., Faustino A., Cunha Â., Gomes N., Almeida A. (2011) Antimicrobial photodynamic therapy: Low environmental impact approach to inactivate pathogenic bacteria in aquaculture systems. Research Day@UA. University of Aveiro. 8th June 2011, Aveiro, Portugal.
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Coelho F.J.R.C., Santos A.L., Oliveira V., Santos L., Gomes N.C.M., Almeida A., Cunha A. (2011) Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria de Aveiro. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.). Actas das Jornadas da Ria de Aveiro. CESAM, Universidade de Aveiro. Aveiro. Portugal. 295-301.
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Alves E., Arrojado C., Pereira C., Carvalho C.M.B., Faustino M.A.F., Tomé J.P.C., Neves M.G.P.M.S., Tomé A.C., Cavaleiro J.A.S., Cunha Â., Gomes N.C.M., Almeida A. (2011) Terapia Fotodinâmica Antimicrobiana como Alternativa aos Antibióticos para Inactivar Bactérias Patogénicas em Águas de Piscicultura. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp.
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Domingues P.M., Louvado A., Coelho F.J.R.C., Santos A.L., Gomes N.C.M., Almeida A., Cunha A. (2011) Isolamento e Caracterização de Bactérias Produtoras de Biossurfactantes da Ria de Aveiro. In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.). Actas das Jornadas da Ria de Aveiro. CESAM, Universidade de Aveiro. Aveiro. Portugal. 214-218.
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Almeida A., Cunha C. , Gomes N.C.M., Santos L., Mendes C. , Pereira C. (2011) Impacto do Virioplâncton sobre a Comunidade Bacteriana da Ria de Aveiro. Jornadas da Ria de Aveiro (2011). In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. 369 pp.
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Santos L., Gomes N. C. M., Cunha A., Almeida A. (2011) Variação da abundância e produtividade bacteriana na Ria de Aveiro durante um período de 10 anos (1996-2007) In: Almeida A. AFL, Bernardes C., Dias J. M., Gomes N. C. M., Pereira E., Queiroga H., Serôdio J. e Vaz N. (ed) Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar, Aveiro, p 205-213.
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Pereira C., Silva Y.J., Gomes N.C.M., Cunha A., Almeida A. (2011) Terapia Fágica como Alternativa de Baixo Impacto Ambiental para Inactivar Bactérias Patogénicas em pisciculturas.In: Almeida, A., Alves, F.L., Bernardes, C., Dias, J.M., Gomes, N.C.M., Pereira, E., Queiroga, H., Serôdio, J. e Vaz, N. (Eds.), 2011. Actas das Jornadas da Ria de Aveiro 2011. Universidade de Aveiro, CESAM - Centro de Estudos do Ambiente e do Mar. Aveiro. pp. 340-348 .
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Louvado A., Santos A. L., Coelho F., Sousa S., Moreira A., Gomes F., Almeida A., Gomes N. C. M., Cunha Â. (2010) Isolation of Surfactant-Resistant Bacteria from the Surface Microlayer, Interdisciplinary Studies on Environmental Chemistry-Biological Responses to Contaminants, Eds., N. Hamamura, S. Suzuki, S. Mendo, C. M. Barroso, H. Iwata and S. Tanabe, pp. 89-95. © by TERRAPUB, Tokyo, 2010.
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Oliveira, J., Cunha, A., Almeida, A., Gomes, N.C.M., Castilho, F., Romalde, J.L., Pereira, M.J. (2009) Assessment of the microbial contamination in bivalves - Future perspectives. In: Troncoso, J.S., Alejo, I. and López, J. (Eds), Resúmenes II Simposio Internacional de Ciencias del Mar, 2009 (ISMS09). Facultad de Ciencias del Mar, Vigo, España. 133 pp.
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